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Search of human proteins with 5730085
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5730085 dynein, light chain, Tctex-type 1 [Homo sapiens]
(113 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5730085 dynein, light chain, Tctex-type 1 [Homo sapiens] 233 3e-62
gi|239753813 PREDICTED: similar to dynein, light chain, Tctex-ty... 189 5e-49
gi|239748376 PREDICTED: hypothetical protein XP_002346645 [Homo ... 189 5e-49
gi|239742301 PREDICTED: hypothetical protein XP_002342481 [Homo ... 189 5e-49
gi|5730087 dynein, light chain, Tctex-type 3 [Homo sapiens] 147 2e-36
gi|229090471 Tctex1 domain containing 2 [Homo sapiens] 56 5e-09
gi|61966721 Tctex1 domain containing 4 [Homo sapiens] 44 2e-05
gi|239735600 Tctex1 domain containing 1 [Homo sapiens] 44 4e-05
gi|169160677 PREDICTED: similar to Tctex1 domain containing 4 [H... 42 1e-04
gi|28372535 t-complex-associated-testis-expressed 3 [Homo sapiens] 35 0.017
gi|157785668 coiled-coil domain containing 39 [Homo sapiens] 29 0.70
gi|126116565 MYC binding protein 2 [Homo sapiens] 28 1.2
gi|187828880 calcium channel, alpha 1A subunit isoform 3 [Homo s... 27 2.7
gi|148762985 pseudouridylate synthase 7 homolog (S. cerevisiae)-... 27 4.6
gi|148762948 pseudouridylate synthase 7 homolog (S. cerevisiae)-... 27 4.6
gi|148762961 pseudouridylate synthase 7 homolog (S. cerevisiae)-... 27 4.6
gi|19923626 apolipoprotein L4 isoform 1 [Homo sapiens] 27 4.6
gi|22035657 apolipoprotein L4 isoform 2 precursor [Homo sapiens] 27 4.6
gi|153252003 sarcomeric mitochondrial creatine kinase precursor ... 26 6.0
gi|153251984 sarcomeric mitochondrial creatine kinase precursor ... 26 6.0
gi|153251982 sarcomeric mitochondrial creatine kinase precursor ... 26 6.0
>gi|5730085 dynein, light chain, Tctex-type 1 [Homo sapiens]
Length = 113
Score = 233 bits (593), Expect = 3e-62
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP 60
MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP
Sbjct: 1 MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP 60
Query: 61 FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI 113
FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI
Sbjct: 61 FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI 113
>gi|239753813 PREDICTED: similar to dynein, light chain, Tctex-type
1 [Homo sapiens]
Length = 116
Score = 189 bits (479), Expect = 5e-49
Identities = 99/118 (83%), Positives = 102/118 (86%), Gaps = 7/118 (5%)
Query: 1 MEDYQAAEETAFVVDEVSNIVKEAIESAIG-----GNAYQHSKVNQWTTNVVEQTLSQLT 55
M DYQA EETAF+V EVSN VKEAIES IG GNAYQHSKVNQWTTNV EQTLSQL
Sbjct: 1 MGDYQAVEETAFIV-EVSNTVKEAIESVIGAGRVGGNAYQHSKVNQWTTNV-EQTLSQLP 58
Query: 56 KLGKPFKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI 113
KLGKPFKYIVTCVI+QKNGAG + ASSCFWDSSTDGS TVRWENKTMYCIV AFGLSI
Sbjct: 59 KLGKPFKYIVTCVIIQKNGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIVGAFGLSI 116
>gi|239748376 PREDICTED: hypothetical protein XP_002346645 [Homo
sapiens]
Length = 116
Score = 189 bits (479), Expect = 5e-49
Identities = 99/118 (83%), Positives = 102/118 (86%), Gaps = 7/118 (5%)
Query: 1 MEDYQAAEETAFVVDEVSNIVKEAIESAIG-----GNAYQHSKVNQWTTNVVEQTLSQLT 55
M DYQA EETAF+V EVSN VKEAIES IG GNAYQHSKVNQWTTNV EQTLSQL
Sbjct: 1 MGDYQAVEETAFIV-EVSNTVKEAIESVIGAGRVGGNAYQHSKVNQWTTNV-EQTLSQLP 58
Query: 56 KLGKPFKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI 113
KLGKPFKYIVTCVI+QKNGAG + ASSCFWDSSTDGS TVRWENKTMYCIV AFGLSI
Sbjct: 59 KLGKPFKYIVTCVIIQKNGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIVGAFGLSI 116
>gi|239742301 PREDICTED: hypothetical protein XP_002342481 [Homo
sapiens]
Length = 116
Score = 189 bits (479), Expect = 5e-49
Identities = 99/118 (83%), Positives = 102/118 (86%), Gaps = 7/118 (5%)
Query: 1 MEDYQAAEETAFVVDEVSNIVKEAIESAIG-----GNAYQHSKVNQWTTNVVEQTLSQLT 55
M DYQA EETAF+V EVSN VKEAIES IG GNAYQHSKVNQWTTNV EQTLSQL
Sbjct: 1 MGDYQAVEETAFIV-EVSNTVKEAIESVIGAGRVGGNAYQHSKVNQWTTNV-EQTLSQLP 58
Query: 56 KLGKPFKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI 113
KLGKPFKYIVTCVI+QKNGAG + ASSCFWDSSTDGS TVRWENKTMYCIV AFGLSI
Sbjct: 59 KLGKPFKYIVTCVIIQKNGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIVGAFGLSI 116
>gi|5730087 dynein, light chain, Tctex-type 3 [Homo sapiens]
Length = 116
Score = 147 bits (371), Expect = 2e-36
Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 1/114 (0%)
Query: 1 MEDYQA-AEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGK 59
ME+Y +E F +E NIVKE ++ +GG Y H+ +NQWT ++VEQ+L+ L KLGK
Sbjct: 1 MEEYHRHCDEVGFNAEEAHNIVKECVDGVLGGEDYNHNNINQWTASIVEQSLTHLVKLGK 60
Query: 60 PFKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI 113
+KYIVTC ++QK+ G HTASSCFWD+++DG+CTVRWEN+TM CIV+ F ++I
Sbjct: 61 AYKYIVTCAVVQKSAYGFHTASSCFWDTTSDGTCTVRWENRTMNCIVNVFAIAI 114
>gi|229090471 Tctex1 domain containing 2 [Homo sapiens]
Length = 142
Score = 56.2 bits (134), Expect = 5e-09
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 5/108 (4%)
Query: 4 YQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLG-KPFK 62
+Q + V D + ++KE + +A Y ++ Q T ++ E +L ++G +K
Sbjct: 35 FQQRFRPSVVKDCIHAVLKEELANA----EYSPEEMPQLTKHLSENIKDKLKEMGFDRYK 90
Query: 63 YIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFG 110
+V VI ++ G G+ AS CFWD+ TD + N +++C+V+AFG
Sbjct: 91 MVVQVVIGEQRGEGVFMASRCFWDADTDNYTHDVFMNDSLFCVVAAFG 138
>gi|61966721 Tctex1 domain containing 4 [Homo sapiens]
Length = 221
Score = 44.3 bits (103), Expect = 2e-05
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 22 KEAIESAIGGN----AYQHSKVNQWTTNVVEQTLSQLTKLGKP-FKYIVTCVIMQKNGAG 76
+ A+E+A+ Y + + + EQ +L +L P +K + + V+ + G G
Sbjct: 124 QRALEAALAAGLHDACYSSDEAARLVRELCEQVHVRLRELSPPRYKLVCSVVLGPRAGQG 183
Query: 77 LHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGL 111
+H S WD + DG +V + N +++ + + GL
Sbjct: 184 VHVVSRALWDVARDGLASVSYTNTSLFAVATVHGL 218
>gi|239735600 Tctex1 domain containing 1 [Homo sapiens]
Length = 179
Score = 43.5 bits (101), Expect = 4e-05
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 4 YQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP-FK 62
YQ F V V++I+K+ + S + Y+ Q T + E +Q+ L P +K
Sbjct: 68 YQLGPPKHFPVVTVNHILKDVVTSYLQVEEYEPELCRQMTKTISEVIKAQVKDLMIPRYK 127
Query: 63 YIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGL 111
IV I Q N + S C WD +D + + N +++ + + + +
Sbjct: 128 LIVIVHIGQLNRQSILIGSRCLWDPKSDTFSSYVFRNSSLFALANVYAV 176
>gi|169160677 PREDICTED: similar to Tctex1 domain containing 4 [Homo
sapiens]
Length = 127
Score = 42.0 bits (97), Expect = 1e-04
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 34 YQHSKVNQWTTNVVEQTLSQLTKLGKP-FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGS 92
Y + + + EQ +L +L P +K + + V+ + G G+H S WD + DG
Sbjct: 46 YSSDEPARLVRELCEQVHVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARDGL 105
Query: 93 CTVRWENKTMYCIVSAFGL 111
+V + N +++ + + GL
Sbjct: 106 ASVSYTNTSLFAVATVHGL 124
>gi|28372535 t-complex-associated-testis-expressed 3 [Homo sapiens]
Length = 198
Score = 34.7 bits (78), Expect = 0.017
Identities = 20/101 (19%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Query: 12 FVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLG-KPFKYIVTCVIM 70
F V V++ + ++ Y + + + ++ L + + G +K+I+ + +
Sbjct: 95 FQAHSVETKVQQILTESLKDVKYDDKVFSHLSLELADRILLAVKEFGYHRYKFIIKVLFI 154
Query: 71 QKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGL 111
QK G ++ AS WD + D + E ++ +V F L
Sbjct: 155 QKTGQAINIASRWIWDIAWDSWVAAKHEAESYVALVLVFAL 195
>gi|157785668 coiled-coil domain containing 39 [Homo sapiens]
Length = 941
Score = 29.3 bits (64), Expect = 0.70
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 2 EDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKPF 61
ED Q+ E T V++ ++N VKE + S ++Q SK + +E+ Q KL K
Sbjct: 752 EDIQSMENTLDVIEHLANNVKEKL-SEKQAYSFQLSKETEEQKPKLERVTKQCAKLTKEI 810
Query: 62 KYI 64
+ +
Sbjct: 811 RLL 813
>gi|126116565 MYC binding protein 2 [Homo sapiens]
Length = 4640
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 16 EVSNIVKEAIESAIGGNAYQH-SKVNQWTTNVVEQTLSQLTKLGKPFKYIVTCVIMQKNG 74
++S I+ + I+ G+ + S+V T N + +T+ LTK+ + F+ V C+ +
Sbjct: 4132 QISEIIIKLIKDMAAGHLSEAWSRV---TKNAIAETIIALTKMEEEFRSPVRCIATTR-- 4186
Query: 75 AGLHTASSCFWDSS-TDGSCTVRWENK 100
L AS C D D + RW K
Sbjct: 4187 LWLALASLCVLDQDHVDRLSSGRWMGK 4213
>gi|187828880 calcium channel, alpha 1A subunit isoform 3 [Homo
sapiens]
Length = 2261
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/61 (24%), Positives = 23/61 (37%)
Query: 1 MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP 60
ME AEE DE + + A+ + SK + E L+ + +G P
Sbjct: 393 MEWISKAEEVILAEDETDGEQRHPFDGALRRTTIKKSKTDLLNPEEAEDQLADIASVGSP 452
Query: 61 F 61
F
Sbjct: 453 F 453
>gi|148762985 pseudouridylate synthase 7 homolog (S.
cerevisiae)-like [Homo sapiens]
Length = 701
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/74 (22%), Positives = 37/74 (50%)
Query: 7 AEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKPFKYIVT 66
+E+ +VD S ++A + + H +N + +V E+ LS+ +G P ++ +
Sbjct: 105 SEKEDTIVDGTSKCEEKADVLSSFLDEKTHELLNNFACDVREKWLSKTELIGLPPEFSIG 164
Query: 67 CVIMQKNGAGLHTA 80
++ + A LH+A
Sbjct: 165 RILDKNQRASLHSA 178
>gi|148762948 pseudouridylate synthase 7 homolog (S.
cerevisiae)-like [Homo sapiens]
Length = 701
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/74 (22%), Positives = 37/74 (50%)
Query: 7 AEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKPFKYIVT 66
+E+ +VD S ++A + + H +N + +V E+ LS+ +G P ++ +
Sbjct: 105 SEKEDTIVDGTSKCEEKADVLSSFLDEKTHELLNNFACDVREKWLSKTELIGLPPEFSIG 164
Query: 67 CVIMQKNGAGLHTA 80
++ + A LH+A
Sbjct: 165 RILDKNQRASLHSA 178
>gi|148762961 pseudouridylate synthase 7 homolog (S.
cerevisiae)-like [Homo sapiens]
Length = 701
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/74 (22%), Positives = 37/74 (50%)
Query: 7 AEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKPFKYIVT 66
+E+ +VD S ++A + + H +N + +V E+ LS+ +G P ++ +
Sbjct: 105 SEKEDTIVDGTSKCEEKADVLSSFLDEKTHELLNNFACDVREKWLSKTELIGLPPEFSIG 164
Query: 67 CVIMQKNGAGLHTA 80
++ + A LH+A
Sbjct: 165 RILDKNQRASLHSA 178
>gi|19923626 apolipoprotein L4 isoform 1 [Homo sapiens]
Length = 348
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 7 AEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKPFK 62
A VV +V N+V+++++ G + + QW +E+ L++LT + + K
Sbjct: 292 ATSGVLVVLDVVNLVQDSLDLHKGAKSESAESLRQWAQE-LEENLNELTHIHQSLK 346
>gi|22035657 apolipoprotein L4 isoform 2 precursor [Homo sapiens]
Length = 351
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 7 AEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKPFK 62
A VV +V N+V+++++ G + + QW +E+ L++LT + + K
Sbjct: 295 ATSGVLVVLDVVNLVQDSLDLHKGAKSESAESLRQWAQE-LEENLNELTHIHQSLK 349
>gi|153252003 sarcomeric mitochondrial creatine kinase precursor
[Homo sapiens]
Length = 419
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 16 EVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKPFKYIVTCVIMQKN 73
EV N+ A+E G A ++ K+++ T ++ + KP ++TC M ++
Sbjct: 187 EVENVAITALEGLKGDLAGRYYKLSEMTEQDQQRLIDDHFLFDKPVSPLLTCAGMARD 244
>gi|153251984 sarcomeric mitochondrial creatine kinase precursor
[Homo sapiens]
Length = 419
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 16 EVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKPFKYIVTCVIMQKN 73
EV N+ A+E G A ++ K+++ T ++ + KP ++TC M ++
Sbjct: 187 EVENVAITALEGLKGDLAGRYYKLSEMTEQDQQRLIDDHFLFDKPVSPLLTCAGMARD 244
>gi|153251982 sarcomeric mitochondrial creatine kinase precursor
[Homo sapiens]
Length = 419
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 16 EVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKPFKYIVTCVIMQKN 73
EV N+ A+E G A ++ K+++ T ++ + KP ++TC M ++
Sbjct: 187 EVENVAITALEGLKGDLAGRYYKLSEMTEQDQQRLIDDHFLFDKPVSPLLTCAGMARD 244
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.127 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,814,344
Number of Sequences: 37866
Number of extensions: 129892
Number of successful extensions: 311
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 285
Number of HSP's gapped (non-prelim): 21
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.