Search of human proteins with 5729907

Search of human proteins with 5729907

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5729907 lipophilin A precursor [Homo sapiens]
         (90 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5729907 lipophilin A precursor [Homo sapiens]                      179   4e-46
gi|5729909 lipophilin B precursor [Homo sapiens]                      107   2e-24
gi|46240866 secretoglobin family 1D member 4 [Homo sapiens]            90   3e-19
gi|4507809 secretoglobin, family 1A, member 1 (uteroglobin) [Hom...    50   4e-07
gi|153252157 secretoglobin, family 1C, member 1 [Homo sapiens]         30   0.41 
gi|110349719 titin isoform N2-A [Homo sapiens]                         30   0.53 
gi|110349717 titin isoform novex-2 [Homo sapiens]                      30   0.53 
gi|110349713 titin isoform novex-1 [Homo sapiens]                      30   0.53 
gi|110349715 titin isoform N2-B [Homo sapiens]                         30   0.53 
gi|147901293 secretoglobin, family 1C, member 1-like [Homo sapiens]    28   2.0  
gi|28373117 contactin 1 isoform 1 precursor [Homo sapiens]             26   5.9  
gi|28373119 contactin 1 isoform 2 precursor [Homo sapiens]             26   5.9  

>gi|5729907 lipophilin A precursor [Homo sapiens]
          Length = 90

 Score =  179 bits (454), Expect = 4e-46
 Identities = 90/90 (100%), Positives = 90/90 (100%)

Query: 1  MRLSVCLLLLTLALCCYRANAVVCQALGSEITGFLLAGKPVFKFQLAKFKAPLEAVAAKM 60
          MRLSVCLLLLTLALCCYRANAVVCQALGSEITGFLLAGKPVFKFQLAKFKAPLEAVAAKM
Sbjct: 1  MRLSVCLLLLTLALCCYRANAVVCQALGSEITGFLLAGKPVFKFQLAKFKAPLEAVAAKM 60

Query: 61 EVKKCVDTMAYEKRVLITKTLGKIAEKCDR 90
          EVKKCVDTMAYEKRVLITKTLGKIAEKCDR
Sbjct: 61 EVKKCVDTMAYEKRVLITKTLGKIAEKCDR 90


>gi|5729909 lipophilin B precursor [Homo sapiens]
          Length = 90

 Score =  107 bits (267), Expect = 2e-24
 Identities = 53/88 (60%), Positives = 65/88 (73%)

Query: 1  MRLSVCLLLLTLALCCYRANAVVCQALGSEITGFLLAGKPVFKFQLAKFKAPLEAVAAKM 60
          M+LSVCLLL+TLALCCY+ANA  C AL SE+  F    +P+FK  LAKF AP EAVAAK+
Sbjct: 1  MKLSVCLLLVTLALCCYQANAEFCPALVSELLDFFFISEPLFKLSLAKFDAPPEAVAAKL 60

Query: 61 EVKKCVDTMAYEKRVLITKTLGKIAEKC 88
           VK+C D M+ +KR LI + L KI +KC
Sbjct: 61 GVKRCTDQMSLQKRSLIAEVLVKILKKC 88


>gi|46240866 secretoglobin family 1D member 4 [Homo sapiens]
          Length = 83

 Score = 90.1 bits (222), Expect = 3e-19
 Identities = 43/83 (51%), Positives = 60/83 (72%)

Query: 1  MRLSVCLLLLTLALCCYRANAVVCQALGSEITGFLLAGKPVFKFQLAKFKAPLEAVAAKM 60
          MRLSVCLL+++LALCCY+A+A+VC A+ SEIT FL         Q+AK   P EA+AAK+
Sbjct: 1  MRLSVCLLMVSLALCCYQAHALVCPAVASEITVFLFLSDAAVNLQVAKLNPPPEALAAKL 60

Query: 61 EVKKCVDTMAYEKRVLITKTLGK 83
          EVK C D ++++KR+ + K+  K
Sbjct: 61 EVKHCTDQISFKKRLSLKKSWWK 83


>gi|4507809 secretoglobin, family 1A, member 1 (uteroglobin) [Homo
          sapiens]
          Length = 91

 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 29/86 (33%), Positives = 46/86 (53%)

Query: 1  MRLSVCLLLLTLALCCYRANAVVCQALGSEITGFLLAGKPVFKFQLAKFKAPLEAVAAKM 60
          M+L+V L L+TLALCC  A+A +C +    I   L+     ++  +  F    +   A  
Sbjct: 1  MKLAVTLTLVTLALCCSSASAEICPSFQRVIETLLMDTPSSYEAAMELFSPDQDMREAGA 60

Query: 61 EVKKCVDTMAYEKRVLITKTLGKIAE 86
          ++KK VDT+  + R  I K + KIA+
Sbjct: 61 QLKKLVDTLPQKPRESIIKLMEKIAQ 86


>gi|153252157 secretoglobin, family 1C, member 1 [Homo sapiens]
          Length = 95

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 16/94 (17%)

Query: 1  MRLSVCLLLLTLALCCYRANAVVCQ-ALGSEITGF-------LLAGKP--VFKFQLAKFK 50
          M+ S  LLL+ L L C      +C+ A G +   F       LL G P  +++  L K+ 
Sbjct: 1  MKGSRALLLVALTLFC------ICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYN 54

Query: 51 APLEAVAAKMEVKKCVDTMAYEKRVLITKTLGKI 84
             +A AA  E+K C+D +    +  + K L ++
Sbjct: 55 VNEDAKAAMTELKSCIDGLQPMHKAELVKLLVQV 88


>gi|110349719 titin isoform N2-A [Homo sapiens]
          Length = 33423

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 28    GSEITGFLLAGKPVFKFQLAKFKAPLEAVAAKMEVKKCVDTMAYEKRVLITKTLG 82
             GSEITGF++  K     ++  ++ P+E   +K ++   ++   Y+ RV+     G
Sbjct: 15225 GSEITGFIIERKDA---KMHTWRQPIETERSKCDITGLLEGQEYKFRVIAKNKFG 15276


>gi|110349717 titin isoform novex-2 [Homo sapiens]
          Length = 27118

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 28   GSEITGFLLAGKPVFKFQLAKFKAPLEAVAAKMEVKKCVDTMAYEKRVLITKTLG 82
            GSEITGF++  K     ++  ++ P+E   +K ++   ++   Y+ RV+     G
Sbjct: 8920 GSEITGFIIERKDA---KMHTWRQPIETERSKCDITGLLEGQEYKFRVIAKNKFG 8971


>gi|110349713 titin isoform novex-1 [Homo sapiens]
          Length = 27051

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 28   GSEITGFLLAGKPVFKFQLAKFKAPLEAVAAKMEVKKCVDTMAYEKRVLITKTLG 82
            GSEITGF++  K     ++  ++ P+E   +K ++   ++   Y+ RV+     G
Sbjct: 8853 GSEITGFIIERKDA---KMHTWRQPIETERSKCDITGLLEGQEYKFRVIAKNKFG 8904


>gi|110349715 titin isoform N2-B [Homo sapiens]
          Length = 26926

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 28   GSEITGFLLAGKPVFKFQLAKFKAPLEAVAAKMEVKKCVDTMAYEKRVLITKTLG 82
            GSEITGF++  K     ++  ++ P+E   +K ++   ++   Y+ RV+     G
Sbjct: 8728 GSEITGFIIERKDA---KMHTWRQPIETERSKCDITGLLEGQEYKFRVIAKNKFG 8779


>gi|147901293 secretoglobin, family 1C, member 1-like [Homo
          sapiens]
          Length = 95

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 16/94 (17%)

Query: 1  MRLSVCLLLLTLALCCYRANAVVCQ-ALGSEITGF-------LLAGKP--VFKFQLAKFK 50
          M+ S  LLL+ L L C      +C+ A G +   F       LL G P  +++  L K+ 
Sbjct: 1  MKGSRALLLVALTLFC------ICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYN 54

Query: 51 APLEAVAAKMEVKKCVDTMAYEKRVLITKTLGKI 84
             +A AA  E+K C D +    +  + K L ++
Sbjct: 55 VNEDAKAAMTELKSCRDGLQPMHKAELVKLLVQV 88


>gi|28373117 contactin 1 isoform 1 precursor [Homo sapiens]
          Length = 1018

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 29  SEITGFLLAGKPVFKFQLAKFKAPLEAVAAKMEVKKCVDT---MAYEKRVLITKTLGK 83
           S I+ + +  K +        K     +   ME  + VD    M YE RV+ T TLG+
Sbjct: 632 SPISKYTIQTKTILSDDWKDAKTDPPIIEGNMEAARAVDLIPWMEYEFRVVATNTLGR 689


>gi|28373119 contactin 1 isoform 2 precursor [Homo sapiens]
          Length = 1007

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 29  SEITGFLLAGKPVFKFQLAKFKAPLEAVAAKMEVKKCVDT---MAYEKRVLITKTLGK 83
           S I+ + +  K +        K     +   ME  + VD    M YE RV+ T TLG+
Sbjct: 621 SPISKYTIQTKTILSDDWKDAKTDPPIIEGNMEAARAVDLIPWMEYEFRVVATNTLGR 678


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.329    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,730,144
Number of Sequences: 37866
Number of extensions: 86572
Number of successful extensions: 227
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 20
length of query: 90
length of database: 18,247,518
effective HSP length: 62
effective length of query: 28
effective length of database: 15,899,826
effective search space: 445195128
effective search space used: 445195128
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (25.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.