Search of human proteins with 5729889

Search of human proteins with 5729889

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5729889 jumping translocation breakpoint [Homo sapiens]
         (146 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5729889 jumping translocation breakpoint [Homo sapiens]            302   8e-83
gi|109240536 DC-STAMP domain containing 2 [Homo sapiens]               28   2.1  
gi|66730481 neuregulin 3 [Homo sapiens]                                28   2.8  
gi|23238204 tumor necrosis factor receptor superfamily, member 1...    28   3.6  
gi|23238202 tumor necrosis factor receptor superfamily, member 1...    28   3.6  
gi|239756340 PREDICTED: hypothetical LOC645212, partial [Homo sa...    27   4.7  
gi|239750823 PREDICTED: hypothetical LOC645212 [Homo sapiens]          27   4.7  
gi|239745185 PREDICTED: hypothetical protein [Homo sapiens]            27   4.7  
gi|110227598 phospholipase B domain containing 1 [Homo sapiens]        27   4.7  

>gi|5729889 jumping translocation breakpoint [Homo sapiens]
          Length = 146

 Score =  302 bits (773), Expect = 8e-83
 Identities = 146/146 (100%), Positives = 146/146 (100%)

Query: 1   MLAGAGRPGLPQGRHLCWLLCAFTLKLCQAEAPVQEEKLSASTSNLPCWLVEEFVVAEEC 60
           MLAGAGRPGLPQGRHLCWLLCAFTLKLCQAEAPVQEEKLSASTSNLPCWLVEEFVVAEEC
Sbjct: 1   MLAGAGRPGLPQGRHLCWLLCAFTLKLCQAEAPVQEEKLSASTSNLPCWLVEEFVVAEEC 60

Query: 61  SPCSNFRAKTTPECGPTGYVEKITCSSSKRNEFKSCRSALMEQRLFWKFEGAVVCVALIF 120
           SPCSNFRAKTTPECGPTGYVEKITCSSSKRNEFKSCRSALMEQRLFWKFEGAVVCVALIF
Sbjct: 61  SPCSNFRAKTTPECGPTGYVEKITCSSSKRNEFKSCRSALMEQRLFWKFEGAVVCVALIF 120

Query: 121 ACLVIIRQRQLDRKALEKVRKQIESI 146
           ACLVIIRQRQLDRKALEKVRKQIESI
Sbjct: 121 ACLVIIRQRQLDRKALEKVRKQIESI 146


>gi|109240536 DC-STAMP domain containing 2 [Homo sapiens]
          Length = 773

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 10  LPQGRHLCWLLCAFTLKLCQAEAPVQ 35
           +PQ  HLC++L  F L LC   + VQ
Sbjct: 224 IPQAYHLCYVLMPFKLALCGLASLVQ 249


>gi|66730481 neuregulin 3 [Homo sapiens]
          Length = 696

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 47  PCWLVEEFVVAEECSPCSNFRAKTT-PECGPTGYVEKITCSSSKRNEFKSCR 97
           P W +  F  A   S  S+  A TT PE   +      T S+ +   FK CR
Sbjct: 240 PSWTLSPFQDAASSSSSSSSSATTTTPETSTSPKFHTTTYSTERSEHFKPCR 291


>gi|23238204 tumor necrosis factor receptor superfamily, member 19
           isoform 2 precursor [Homo sapiens]
          Length = 417

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 8/84 (9%)

Query: 59  ECSPCSNFRAKTTPECGPTGYVEKITCSSSKRNEFKSCRSALMEQRLFWKFEGAVVCVAL 118
           EC PC +      P C     + KI  ++S   +  +  +A++   L      A V +AL
Sbjct: 134 ECVPCGDPPPPYEPHCASKVNLVKIASTASSPRD--TALAAVICSAL------ATVLLAL 185

Query: 119 IFACLVIIRQRQLDRKALEKVRKQ 142
           +  C++  +++ +++K    +R Q
Sbjct: 186 LILCVIYCKRQFMEKKPSWSLRSQ 209


>gi|23238202 tumor necrosis factor receptor superfamily, member 19
           isoform 1 precursor [Homo sapiens]
          Length = 423

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 8/84 (9%)

Query: 59  ECSPCSNFRAKTTPECGPTGYVEKITCSSSKRNEFKSCRSALMEQRLFWKFEGAVVCVAL 118
           EC PC +      P C     + KI  ++S   +  +  +A++   L      A V +AL
Sbjct: 134 ECVPCGDPPPPYEPHCASKVNLVKIASTASSPRD--TALAAVICSAL------ATVLLAL 185

Query: 119 IFACLVIIRQRQLDRKALEKVRKQ 142
           +  C++  +++ +++K    +R Q
Sbjct: 186 LILCVIYCKRQFMEKKPSWSLRSQ 209


>gi|239756340 PREDICTED: hypothetical LOC645212, partial [Homo
           sapiens]
          Length = 119

 Score = 27.3 bits (59), Expect = 4.7
 Identities = 25/86 (29%), Positives = 29/86 (33%), Gaps = 11/86 (12%)

Query: 4   GAGRP--------GLPQGRHLCWLLCAFTLKLCQAEAPVQEEKLSASTSNLPCWLVEEFV 55
           GAGRP        G    R L      + L L     P       AST      LV    
Sbjct: 22  GAGRPPPDSGPRVGNVSARKLAEWFFGWRLNLASLRRPSPANAYPASTGGCAVPLVTVIT 81

Query: 56  VAEEC---SPCSNFRAKTTPECGPTG 78
           V       +PCS   ++ TP CG  G
Sbjct: 82  VHGRLRIPTPCSEEGSEATPACGVGG 107


>gi|239750823 PREDICTED: hypothetical LOC645212 [Homo sapiens]
          Length = 149

 Score = 27.3 bits (59), Expect = 4.7
 Identities = 25/86 (29%), Positives = 29/86 (33%), Gaps = 11/86 (12%)

Query: 4   GAGRP--------GLPQGRHLCWLLCAFTLKLCQAEAPVQEEKLSASTSNLPCWLVEEFV 55
           GAGRP        G    R L      + L L     P       AST      LV    
Sbjct: 52  GAGRPPPDSGPRVGNVSARKLAEWFFGWRLNLASLRRPSPANAYPASTGGCAVPLVTVIT 111

Query: 56  VAEEC---SPCSNFRAKTTPECGPTG 78
           V       +PCS   ++ TP CG  G
Sbjct: 112 VHGRLRIPTPCSEEGSEATPACGVGG 137


>gi|239745185 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 149

 Score = 27.3 bits (59), Expect = 4.7
 Identities = 25/86 (29%), Positives = 29/86 (33%), Gaps = 11/86 (12%)

Query: 4   GAGRP--------GLPQGRHLCWLLCAFTLKLCQAEAPVQEEKLSASTSNLPCWLVEEFV 55
           GAGRP        G    R L      + L L     P       AST      LV    
Sbjct: 52  GAGRPPPDSGPRVGNVSARKLAEWFFGWRLNLASLRRPSPANAYPASTGGCAVPLVTVIT 111

Query: 56  VAEEC---SPCSNFRAKTTPECGPTG 78
           V       +PCS   ++ TP CG  G
Sbjct: 112 VHGRLRIPTPCSEEGSEATPACGVGG 137


>gi|110227598 phospholipase B domain containing 1 [Homo sapiens]
          Length = 553

 Score = 27.3 bits (59), Expect = 4.7
 Identities = 15/28 (53%), Positives = 15/28 (53%)

Query: 6  GRPGLPQGRHLCWLLCAFTLKLCQAEAP 33
          GRPGLPQ   L  LL    L L  AE P
Sbjct: 8  GRPGLPQPPPLLLLLLLLPLLLVTAEPP 35


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.135    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,022,956
Number of Sequences: 37866
Number of extensions: 253880
Number of successful extensions: 802
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 799
Number of HSP's gapped (non-prelim): 9
length of query: 146
length of database: 18,247,518
effective HSP length: 92
effective length of query: 54
effective length of database: 14,763,846
effective search space: 797247684
effective search space used: 797247684
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.