Search of human proteins with 56676379

Search of human proteins with 56676379

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|56676379 intraflagellar transport 52 homolog [Homo sapiens]
         (437 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|56676379 intraflagellar transport 52 homolog [Homo sapiens]        880   0.0  
gi|92091600 ArfGAP with RhoGAP domain, ankyrin repeat and PH dom...    33   0.51 
gi|109689723 abl interactor 2 [Homo sapiens]                           32   1.1  
gi|4504465 homeobox B2 [Homo sapiens]                                  32   1.1  
gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens]     32   1.5  
gi|66932982 filamin-binding LIM protein-1 isoform a [Homo sapiens]     32   1.5  
gi|146134388 YLP motif containing 1 [Homo sapiens]                     30   3.3  
gi|4759274 thioredoxin-like 1 [Homo sapiens]                           30   4.3  
gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo s...    30   5.6  
gi|17864090 autism susceptibility candidate 2 isoform 1 [Homo sa...    30   5.6  
gi|110431370 espin [Homo sapiens]                                      30   5.6  
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ...    29   7.4  
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa...    29   7.4  
gi|9945318 MAX binding protein [Homo sapiens]                          29   9.6  

>gi|56676379 intraflagellar transport 52 homolog [Homo sapiens]
          Length = 437

 Score =  880 bits (2275), Expect = 0.0
 Identities = 437/437 (100%), Positives = 437/437 (100%)

Query: 1   MEKELRSTILFNAYKKEIFTTNNGYKSMQKKLRSNWKIQSLKDEITSEKLNGVKLWITAG 60
           MEKELRSTILFNAYKKEIFTTNNGYKSMQKKLRSNWKIQSLKDEITSEKLNGVKLWITAG
Sbjct: 1   MEKELRSTILFNAYKKEIFTTNNGYKSMQKKLRSNWKIQSLKDEITSEKLNGVKLWITAG 60

Query: 61  PREKFTAAEFEILKKYLDTGGDVFVMLGEGGESRFDTNINFLLEEYGIMVNNDAVVRNVY 120
           PREKFTAAEFEILKKYLDTGGDVFVMLGEGGESRFDTNINFLLEEYGIMVNNDAVVRNVY
Sbjct: 61  PREKFTAAEFEILKKYLDTGGDVFVMLGEGGESRFDTNINFLLEEYGIMVNNDAVVRNVY 120

Query: 121 HKYFHPKEALVSSGVLNREISRAAGKAVPGIIDEESSGNNAQALTFVYPFGATLSVMKPA 180
           HKYFHPKEALVSSGVLNREISRAAGKAVPGIIDEESSGNNAQALTFVYPFGATLSVMKPA
Sbjct: 121 HKYFHPKEALVSSGVLNREISRAAGKAVPGIIDEESSGNNAQALTFVYPFGATLSVMKPA 180

Query: 181 VAVLSTGSVCFPLNRPILAFYHSKNQGGKLAVLGSCHMFSDQYLDKEENSKIMDVVFQWL 240
           VAVLSTGSVCFPLNRPILAFYHSKNQGGKLAVLGSCHMFSDQYLDKEENSKIMDVVFQWL
Sbjct: 181 VAVLSTGSVCFPLNRPILAFYHSKNQGGKLAVLGSCHMFSDQYLDKEENSKIMDVVFQWL 240

Query: 241 TTGDIHLNQIDAEDPEISDYMMLPYTATLSKRNRECLQESDEIPRDFTTLFDLSIFQLDT 300
           TTGDIHLNQIDAEDPEISDYMMLPYTATLSKRNRECLQESDEIPRDFTTLFDLSIFQLDT
Sbjct: 241 TTGDIHLNQIDAEDPEISDYMMLPYTATLSKRNRECLQESDEIPRDFTTLFDLSIFQLDT 300

Query: 301 TSFHSVIEAHEQLNVKHEPLQLIQPQFETPLPTLQPAVFPPSFRELPPPPLELFDLDETF 360
           TSFHSVIEAHEQLNVKHEPLQLIQPQFETPLPTLQPAVFPPSFRELPPPPLELFDLDETF
Sbjct: 301 TSFHSVIEAHEQLNVKHEPLQLIQPQFETPLPTLQPAVFPPSFRELPPPPLELFDLDETF 360

Query: 361 SSEKARLAQITNKCTEEDLEFYVRKCGDILGVTSKLPKDQQDAKHILEHVFFQVVEFKKL 420
           SSEKARLAQITNKCTEEDLEFYVRKCGDILGVTSKLPKDQQDAKHILEHVFFQVVEFKKL
Sbjct: 361 SSEKARLAQITNKCTEEDLEFYVRKCGDILGVTSKLPKDQQDAKHILEHVFFQVVEFKKL 420

Query: 421 NQEHDIDTSETAFQNNF 437
           NQEHDIDTSETAFQNNF
Sbjct: 421 NQEHDIDTSETAFQNNF 437


>gi|92091600 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain
           1 isoform c [Homo sapiens]
          Length = 1450

 Score = 33.1 bits (74), Expect = 0.51
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 13/101 (12%)

Query: 324 QPQFETPLPTL-----QPAVFPPSFRELPPPPLELF------DLDETFSSEKARLAQITN 372
           QPQ E PL TL     QP   PP   E+PP P+ LF      D DE         A++  
Sbjct: 188 QPQSEEPLSTLPQGPPQPPSPPPCPPEIPPKPVRLFPEFDDSDYDEVPEEGPGAPARVMT 247

Query: 373 KCTEEDLEFYVR--KCGDILGVTSKLPKDQQDAKHILEHVF 411
           K  E       R  +   +L    +L  D Q  +   +H +
Sbjct: 248 KKEEPPPSRVPRAVRVASLLSEGEELSGDDQGDEEEDDHAY 288


>gi|109689723 abl interactor 2 [Homo sapiens]
          Length = 475

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 6/112 (5%)

Query: 305 SVIEAHEQLNVKHEPLQLIQPQFETPLPTLQPAVFPPSFRELPPPPLELFDLDETFSSEK 364
           S+++   QL +     ++ +   +TP P   P V  P F E PPPP       E +  E+
Sbjct: 339 SILQVTPQLPLMGFVARVQENISDTPPPP--PPVEEPVFDESPPPP----PPPEDYEEEE 392

Query: 365 ARLAQITNKCTEEDLEFYVRKCGDILGVTSKLPKDQQDAKHILEHVFFQVVE 416
           A + + ++   EED  +  R   + +       KD++D     E     V++
Sbjct: 393 AAVVEYSDPYAEEDPPWAPRSYLEKVVAIYDYTKDKEDELSFQEGAIIYVIK 444


>gi|4504465 homeobox B2 [Homo sapiens]
          Length = 356

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 13/64 (20%)

Query: 301 TSFHSVIEAHEQLNVKHEPLQLIQPQFETPLPTLQP-------------AVFPPSFRELP 347
           TSF +V+E  +  ++K   L    P FE   P+LQP             A   P+    P
Sbjct: 23  TSFPAVLETFQTSSIKESTLIPPPPPFEQTFPSLQPGASTLQRPRSQKRAEDGPALPPPP 82

Query: 348 PPPL 351
           PPPL
Sbjct: 83  PPPL 86


>gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens]
          Length = 374

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 305 SVIEAHEQLNVKHEPLQLIQPQFETPLPTLQPAVFPPSFRELPPPPLE 352
           S+I   EQL++   P     PQ     P++QP    P   ELPPPP E
Sbjct: 128 SLIADLEQLHLSPPPPP---PQAPAEGPSVQPGPLRPMEEELPPPPAE 172


>gi|66932982 filamin-binding LIM protein-1 isoform a [Homo sapiens]
          Length = 373

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 305 SVIEAHEQLNVKHEPLQLIQPQFETPLPTLQPAVFPPSFRELPPPPLE 352
           S+I   EQL++   P     PQ     P++QP    P   ELPPPP E
Sbjct: 128 SLIADLEQLHLSPPPPP---PQAPAEGPSVQPGPLRPMEEELPPPPAE 172


>gi|146134388 YLP motif containing 1 [Homo sapiens]
          Length = 2146

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 314 NVKHEPLQLIQPQFETPLPTLQPAVFPPSFRELPPP 349
           N+   P  +   Q   PLPT+ P V PPS   LPPP
Sbjct: 513 NMSMPPPFVPYSQMPPPLPTMPPPVLPPS---LPPP 545


>gi|4759274 thioredoxin-like 1 [Homo sapiens]
          Length = 289

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 22/131 (16%)

Query: 253 EDPEI-SDYM-MLPYTATLSKRNRECLQESDEIPRDFTTLFDLSIFQLDTTSFHSVIEAH 310
           ED +I   YM ++P+   ++K   ECL ESDE   D       +  + DTT   S  +  
Sbjct: 115 EDTDIPKGYMDLMPF---INKAGCECLNESDEHGFD-------NCLRKDTTFLES--DCD 162

Query: 311 EQLNVK---HEPLQLIQPQFETPLPTLQPAVFPPSFRELPPPPLELFDLDETFSSEKARL 367
           EQL +    ++P++L   +F+ P    Q   +   F  LP       D +E   SE  + 
Sbjct: 163 EQLLITVAFNQPVKLYSMKFQGP-DNGQGPKYVKIFINLP----RSMDFEEAERSEPTQA 217

Query: 368 AQITNKCTEED 378
            ++T    +ED
Sbjct: 218 LELTEDDIKED 228


>gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo
           sapiens]
          Length = 1235

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 13/35 (37%), Positives = 16/35 (45%)

Query: 317 HEPLQLIQPQFETPLPTLQPAVFPPSFRELPPPPL 351
           H PL    P  + P  +  P +F P     PPPPL
Sbjct: 438 HSPLHSFTPTLQPPAHSHHPNMFAPPTALPPPPPL 472


>gi|17864090 autism susceptibility candidate 2 isoform 1 [Homo
           sapiens]
          Length = 1259

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 13/35 (37%), Positives = 16/35 (45%)

Query: 317 HEPLQLIQPQFETPLPTLQPAVFPPSFRELPPPPL 351
           H PL    P  + P  +  P +F P     PPPPL
Sbjct: 438 HSPLHSFTPTLQPPAHSHHPNMFAPPTALPPPPPL 472


>gi|110431370 espin [Homo sapiens]
          Length = 854

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 17/77 (22%)

Query: 291 FDLSIFQLDTTSFHSVIEAHEQLNVKHEP--------------LQLIQPQFETPLPTL-- 334
           FDLS      +++ S   +H  +  +H P              + ++ P+   P  T+  
Sbjct: 368 FDLSSPTSTLSNYDSCSSSHSSIKGQHPPCGLSSARAADIQSYMDMLNPELGLPRGTIGK 427

Query: 335 -QPAVFPPSFRELPPPP 350
             P   PPSF   PPPP
Sbjct: 428 PTPPPPPPSFPPPPPPP 444


>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
           sapiens]
          Length = 5537

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 323 IQPQFETPLPTLQPAVFPPSFRELPPPPLE 352
           ++PQ E PL    P + PP    L PPP E
Sbjct: 426 LEPQLEAPLNEEMPLLPPPEESPLSPPPEE 455


>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
            sapiens]
          Length = 2881

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 300  TTSFHSVIEAHEQLNVKHEPLQLIQPQFETPLPTLQP 336
            TT    +I A+++ N K+  +Q IQP F  P   +QP
Sbjct: 1782 TTRLRRLITAYQRTN-KNRQIQQIQPTFSVPTSVMQP 1817


>gi|9945318 MAX binding protein [Homo sapiens]
          Length = 582

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 317 HEPLQLIQPQFETPLPTLQPAVFPPSFRELPPP 349
           H P+Q  QPQ +TPLP   P    P+   +P P
Sbjct: 395 HLPVQQQQPQQKTPLPAPPPPPAAPAQTLVPAP 427


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,685,984
Number of Sequences: 37866
Number of extensions: 770132
Number of successful extensions: 2792
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2768
Number of HSP's gapped (non-prelim): 34
length of query: 437
length of database: 18,247,518
effective HSP length: 105
effective length of query: 332
effective length of database: 14,271,588
effective search space: 4738167216
effective search space used: 4738167216
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.