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Search of human proteins with 134288902
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|134288902 aminoglycoside phosphotransferase domain
containing 1 isoform 2 [Homo sapiens]
(220 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|134288902 aminoglycoside phosphotransferase domain containing... 438 e-123
gi|134288871 aminoglycoside phosphotransferase domain containing... 438 e-123
gi|239752520 PREDICTED: similar to Rap guanine nucleotide exchan... 36 0.029
gi|7657261 Rap guanine nucleotide exchange factor 2 [Homo sapiens] 36 0.029
gi|15619008 vacuolar protein sorting 13A isoform B [Homo sapiens] 32 0.56
gi|66346676 vacuolar protein sorting 13A isoform D [Homo sapiens] 32 0.56
gi|66346674 vacuolar protein sorting 13A isoform A [Homo sapiens] 32 0.56
gi|66346672 vacuolar protein sorting 13A isoform C [Homo sapiens] 32 0.56
gi|4758012 clathrin heavy chain 1 [Homo sapiens] 30 2.1
gi|50539414 cellular modulator of immune recognition isoform 7 [... 30 2.1
gi|50539412 cellular modulator of immune recognition isoform 6 [... 30 2.1
gi|50539410 cellular modulator of immune recognition isoform 8 [... 30 2.1
gi|67782309 manganese superoxide dismutase isoform B precursor [... 28 8.0
gi|242247001 clathrin, heavy polypeptide-like 1 isoform 2 [Homo ... 28 8.0
gi|242246985 clathrin, heavy polypeptide-like 1 isoform 1 [Homo ... 28 8.0
gi|22094135 DOT1-like, histone H3 methyltransferase [Homo sapiens] 28 8.0
gi|4504061 glucosamine (N-acetyl)-6-sulfatase precursor [Homo sa... 28 8.0
>gi|134288902 aminoglycoside phosphotransferase domain containing 1
isoform 2 [Homo sapiens]
Length = 220
Score = 438 bits (1127), Expect = e-123
Identities = 220/220 (100%), Positives = 220/220 (100%)
Query: 1 MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT 60
MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT
Sbjct: 1 MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT 60
Query: 61 EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS 120
EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS
Sbjct: 61 EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS 120
Query: 121 YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKN 180
YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKN
Sbjct: 121 YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKN 180
Query: 181 VPLLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLSHFRE 220
VPLLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLSHFRE
Sbjct: 181 VPLLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLSHFRE 220
>gi|134288871 aminoglycoside phosphotransferase domain containing 1
isoform 1 [Homo sapiens]
Length = 373
Score = 438 bits (1127), Expect = e-123
Identities = 220/220 (100%), Positives = 220/220 (100%)
Query: 1 MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT 60
MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT
Sbjct: 1 MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT 60
Query: 61 EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS 120
EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS
Sbjct: 61 EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS 120
Query: 121 YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKN 180
YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKN
Sbjct: 121 YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKN 180
Query: 181 VPLLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLSHFRE 220
VPLLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLSHFRE
Sbjct: 181 VPLLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLSHFRE 220
>gi|239752520 PREDICTED: similar to Rap guanine nucleotide exchange
factor 2, partial [Homo sapiens]
Length = 803
Score = 35.8 bits (81), Expect = 0.029
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 50 VYVSKTKDGPTEYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASL 109
V + +TK PT L +S T +S NPDL++ + I+ F P + K D +
Sbjct: 564 VGLRQTKHIPT--ALPVSGTLSSSNPDLLQSHHRILDFSATPDLPDQVLRVFKADQQSRY 621
Query: 110 VSVDSGSEIKSYLVRLL-----TYLPGR-PIAELPVSPQLLYEIGKLAAKLDKTLQR 160
+ + + K +++ + T P + + E+ V+P+ + + +L +L K R
Sbjct: 622 IMISKDTTAKEVVIQAIREFAVTATPDQYSLCEVSVTPEGVIKQRRLPDQLSKLADR 678
>gi|7657261 Rap guanine nucleotide exchange factor 2 [Homo sapiens]
Length = 1499
Score = 35.8 bits (81), Expect = 0.029
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 50 VYVSKTKDGPTEYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASL 109
V + +TK PT L +S T +S NPDL++ + I+ F P + K D +
Sbjct: 564 VGLRQTKHIPT--ALPVSGTLSSSNPDLLQSHHRILDFSATPDLPDQVLRVFKADQQSRY 621
Query: 110 VSVDSGSEIKSYLVRLL-----TYLPGR-PIAELPVSPQLLYEIGKLAAKLDKTLQR 160
+ + + K +++ + T P + + E+ V+P+ + + +L +L K R
Sbjct: 622 IMISKDTTAKEVVIQAIREFAVTATPDQYSLCEVSVTPEGVIKQRRLPDQLSKLADR 678
>gi|15619008 vacuolar protein sorting 13A isoform B [Homo sapiens]
Length = 3095
Score = 31.6 bits (70), Expect = 0.56
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 41 PSYDDQNFH-VYVSKTKDGPTEYVLKISNTKASKN-PDLIEVQNHIIMFLK 89
P Y D+N VY+ T D E +L + KA KN PDL N+++ +K
Sbjct: 938 PEYLDENKKPVYLVTTLDNTMEDLLTLEYVKAEKNVPDLKSTYNNVLQLIK 988
>gi|66346676 vacuolar protein sorting 13A isoform D [Homo sapiens]
Length = 3069
Score = 31.6 bits (70), Expect = 0.56
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 41 PSYDDQNFH-VYVSKTKDGPTEYVLKISNTKASKN-PDLIEVQNHIIMFLK 89
P Y D+N VY+ T D E +L + KA KN PDL N+++ +K
Sbjct: 938 PEYLDENKKPVYLVTTLDNTMEDLLTLEYVKAEKNVPDLKSTYNNVLQLIK 988
>gi|66346674 vacuolar protein sorting 13A isoform A [Homo sapiens]
Length = 3174
Score = 31.6 bits (70), Expect = 0.56
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 41 PSYDDQNFH-VYVSKTKDGPTEYVLKISNTKASKN-PDLIEVQNHIIMFLK 89
P Y D+N VY+ T D E +L + KA KN PDL N+++ +K
Sbjct: 938 PEYLDENKKPVYLVTTLDNTMEDLLTLEYVKAEKNVPDLKSTYNNVLQLIK 988
>gi|66346672 vacuolar protein sorting 13A isoform C [Homo sapiens]
Length = 3135
Score = 31.6 bits (70), Expect = 0.56
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 41 PSYDDQNFH-VYVSKTKDGPTEYVLKISNTKASKN-PDLIEVQNHIIMFLK 89
P Y D+N VY+ T D E +L + KA KN PDL N+++ +K
Sbjct: 938 PEYLDENKKPVYLVTTLDNTMEDLLTLEYVKAEKNVPDLKSTYNNVLQLIK 988
>gi|4758012 clathrin heavy chain 1 [Homo sapiens]
Length = 1675
Score = 29.6 bits (65), Expect = 2.1
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 164 PKLSSLHRENFIWNLKNVPLLEKYLYALGQNRNREIVEHVIHLFKEE 210
P+L N+ +K +PL++ YL ++ + N+ + E + +LF E
Sbjct: 1428 PRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITE 1474
>gi|50539414 cellular modulator of immune recognition isoform 7
[Homo sapiens]
Length = 291
Score = 29.6 bits (65), Expect = 2.1
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Query: 32 LKVSKVRPLPSYDDQNFHVYVSKTKDGPTE---------YVLKISNTKASKNPDLIEVQN 82
+ + ++ +PS D + VY SKTK+ E ++ SN + +P
Sbjct: 3 MPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASAPA 62
Query: 83 HIIMFLKAAGFPTAS----VCHTKGDNTASLVS 111
+ F + + P++ +CH +GD+ + L++
Sbjct: 63 PVSSFSRTSITPSSQDICRICHCEGDDESPLIT 95
>gi|50539412 cellular modulator of immune recognition isoform 6
[Homo sapiens]
Length = 291
Score = 29.6 bits (65), Expect = 2.1
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Query: 32 LKVSKVRPLPSYDDQNFHVYVSKTKDGPTE---------YVLKISNTKASKNPDLIEVQN 82
+ + ++ +PS D + VY SKTK+ E ++ SN + +P
Sbjct: 3 MPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASAPA 62
Query: 83 HIIMFLKAAGFPTAS----VCHTKGDNTASLVS 111
+ F + + P++ +CH +GD+ + L++
Sbjct: 63 PVSSFSRTSITPSSQDICRICHCEGDDESPLIT 95
>gi|50539410 cellular modulator of immune recognition isoform 8
[Homo sapiens]
Length = 291
Score = 29.6 bits (65), Expect = 2.1
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Query: 32 LKVSKVRPLPSYDDQNFHVYVSKTKDGPTE---------YVLKISNTKASKNPDLIEVQN 82
+ + ++ +PS D + VY SKTK+ E ++ SN + +P
Sbjct: 3 MPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASAPA 62
Query: 83 HIIMFLKAAGFPTAS----VCHTKGDNTASLVS 111
+ F + + P++ +CH +GD+ + L++
Sbjct: 63 PVSSFSRTSITPSSQDICRICHCEGDDESPLIT 95
>gi|67782309 manganese superoxide dismutase isoform B precursor
[Homo sapiens]
Length = 183
Score = 27.7 bits (60), Expect = 8.0
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 122 LVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKNV 181
L +L YL R LP P Y+ G L ++ + + HH K H ++ NL
Sbjct: 13 LAPVLGYLGSRQKHSLPDLP---YDYGALEPHINAQIMQLHHSK----HHAAYVNNLNVT 65
Query: 182 PLLEKYLYALGQNRNREIVE 201
EKY AL + E ++
Sbjct: 66 E--EKYQEALAKGELLEAIK 83
>gi|242247001 clathrin, heavy polypeptide-like 1 isoform 2 [Homo
sapiens]
Length = 1583
Score = 27.7 bits (60), Expect = 8.0
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 164 PKLSSLHRENFIWNLKNVPLLEKYLYALGQNRNREIVEHVIHLFKEE 210
P+L +F +PL++ YL ++ + N+ + E + HL EE
Sbjct: 1428 PRLDHTWTVSFFSKAGQLPLVKPYLRSVQSHNNKSVNEALNHLLTEE 1474
>gi|242246985 clathrin, heavy polypeptide-like 1 isoform 1 [Homo
sapiens]
Length = 1640
Score = 27.7 bits (60), Expect = 8.0
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 164 PKLSSLHRENFIWNLKNVPLLEKYLYALGQNRNREIVEHVIHLFKEE 210
P+L +F +PL++ YL ++ + N+ + E + HL EE
Sbjct: 1428 PRLDHTWTVSFFSKAGQLPLVKPYLRSVQSHNNKSVNEALNHLLTEE 1474
>gi|22094135 DOT1-like, histone H3 methyltransferase [Homo sapiens]
Length = 1537
Score = 27.7 bits (60), Expect = 8.0
Identities = 21/85 (24%), Positives = 38/85 (44%)
Query: 58 GPTEYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSE 117
GPT+ +S A ++++N +F+ AA P S+ G A+ + + S
Sbjct: 1398 GPTDKTPLLSGKAAKARDREVDLKNGHNLFISAAAVPPGSLLSGPGLAPAASSAGGAASS 1457
Query: 118 IKSYLVRLLTYLPGRPIAELPVSPQ 142
+++ L + PG A P+S Q
Sbjct: 1458 AQTHRSFLGPFPPGPQFALGPMSLQ 1482
>gi|4504061 glucosamine (N-acetyl)-6-sulfatase precursor [Homo
sapiens]
Length = 552
Score = 27.7 bits (60), Expect = 8.0
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 43 YDDQNFHVYVSKTKDGPTEYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTK 102
+DDQ V V P + I+N + +P+L+ N+ +M L++ PT C T
Sbjct: 469 FDDQEVFVEVYNLTADPDQ----ITNIAKTIDPELLGKMNYRLMMLQSCSGPT---CRTP 521
Query: 103 G 103
G
Sbjct: 522 G 522
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,828,879
Number of Sequences: 37866
Number of extensions: 324599
Number of successful extensions: 865
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 856
Number of HSP's gapped (non-prelim): 18
length of query: 220
length of database: 18,247,518
effective HSP length: 98
effective length of query: 122
effective length of database: 14,536,650
effective search space: 1773471300
effective search space used: 1773471300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.