Search of human proteins with 55956801

Search of human proteins with 55956801

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|55956801 SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily b, member 1 isoform b [Homo sapiens]
         (376 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|55956801 SWI/SNF related, matrix associated, actin dependent ...   764   0.0  
gi|27545326 SWI/SNF related, matrix associated, actin dependent ...   756   0.0  
gi|12083581 phosphoinositide-specific phospholipase C beta 1 iso...    32   0.93 
gi|33356544 phosphoinositide-specific phospholipase C beta 1 iso...    32   0.93 
gi|110556640 DNA helicase HEL308 [Homo sapiens]                        32   1.2  
gi|122937434 Rho-guanine nucleotide exchange factor [Homo sapiens]     30   2.7  
gi|194328734 PHD finger protein 10 isoform a [Homo sapiens]            30   2.7  
gi|48255937 CD44 antigen isoform 2 precursor [Homo sapiens]            30   4.6  
gi|48255935 CD44 antigen isoform 1 precursor [Homo sapiens]            30   4.6  
gi|24432077 melanoma associated antigen (mutated) 1-like 1 [Homo...    30   4.6  
gi|124494231 dermatan sulfate epimerase precursor [Homo sapiens]       29   6.0  
gi|7019521 dermatan sulfate epimerase precursor [Homo sapiens]         29   6.0  
gi|48255959 plasma membrane calcium ATPase 4 isoform 4a [Homo sa...    29   7.9  
gi|48255957 plasma membrane calcium ATPase 4 isoform 4b [Homo sa...    29   7.9  
gi|23510323 nephroretinin [Homo sapiens]                               29   7.9  

>gi|55956801 SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily b, member 1 isoform b
           [Homo sapiens]
          Length = 376

 Score =  764 bits (1972), Expect = 0.0
 Identities = 376/376 (100%), Positives = 376/376 (100%)

Query: 1   MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER 60
           MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
Sbjct: 1   MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER 60

Query: 61  KKIVASSHDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKRNS 120
           KKIVASSHDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKRNS
Sbjct: 61  KKIVASSHDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKRNS 120

Query: 121 QWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLVPI 180
           QWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLVPI
Sbjct: 121 QWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLVPI 180

Query: 181 RLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQIESYP 240
           RLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQIESYP
Sbjct: 181 RLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQIESYP 240

Query: 241 TDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVT 300
           TDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVT
Sbjct: 241 TDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVT 300

Query: 301 TIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQD 360
           TIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQD
Sbjct: 301 TIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQD 360

Query: 361 RNTRRMRRLANTAPAW 376
           RNTRRMRRLANTAPAW
Sbjct: 361 RNTRRMRRLANTAPAW 376


>gi|27545326 SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily b, member 1 isoform a
           [Homo sapiens]
          Length = 385

 Score =  756 bits (1952), Expect = 0.0
 Identities = 376/385 (97%), Positives = 376/385 (97%), Gaps = 9/385 (2%)

Query: 1   MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER 60
           MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
Sbjct: 1   MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER 60

Query: 61  KKIVASSH---------DHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL 111
           KKIVASSH         DHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
Sbjct: 61  KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL 120

Query: 112 REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA 171
           REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA
Sbjct: 121 REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA 180

Query: 172 SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA 231
           SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA
Sbjct: 181 SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA 240

Query: 232 IRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE 291
           IRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE
Sbjct: 241 IRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE 300

Query: 292 LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE 351
           LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE
Sbjct: 301 LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE 360

Query: 352 MEKKIRDQDRNTRRMRRLANTAPAW 376
           MEKKIRDQDRNTRRMRRLANTAPAW
Sbjct: 361 MEKKIRDQDRNTRRMRRLANTAPAW 385


>gi|12083581 phosphoinositide-specific phospholipase C beta 1 isoform
            a [Homo sapiens]
          Length = 1216

 Score = 32.0 bits (71), Expect = 0.93
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 44   YKRYPSLWRRLATVEERKKIVASSHDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSI 103
            Y R  +   + A  + +KK   SS DHG +T+   +  L A   ++++D  D++ + + +
Sbjct: 959  YLRRRAALEKSAKKDSKKKSEPSSPDHGSSTIEQDLAALDAEMTQKLIDLKDKQQQQL-L 1017

Query: 104  STEPPTYLREQKAKR 118
            +     Y  E+  KR
Sbjct: 1018 NLRQEQYYSEKYQKR 1032


>gi|33356544 phosphoinositide-specific phospholipase C beta 1 isoform
            b [Homo sapiens]
          Length = 1173

 Score = 32.0 bits (71), Expect = 0.93
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 44   YKRYPSLWRRLATVEERKKIVASSHDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSI 103
            Y R  +   + A  + +KK   SS DHG +T+   +  L A   ++++D  D++ + + +
Sbjct: 959  YLRRRAALEKSAKKDSKKKSEPSSPDHGSSTIEQDLAALDAEMTQKLIDLKDKQQQQL-L 1017

Query: 104  STEPPTYLREQKAKR 118
            +     Y  E+  KR
Sbjct: 1018 NLRQEQYYSEKYQKR 1032


>gi|110556640 DNA helicase HEL308 [Homo sapiens]
          Length = 1101

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 12  QKPVKFQLEDDGEFYMIGSEVGNYLRMFRG--SLYKRYPSLWRRLATVEERKKIVASSHD 69
           +K V+    D G FY + S+V +    F+G   LY+ +      L +V+ERK ++ S   
Sbjct: 303 KKTVESSSNDLGPFYSLPSKVRDLYAQFKGIEKLYE-WQHTCLTLNSVQERKNLIYSLPT 361

Query: 70  HGYTTLATSVTLLK 83
            G  TL   + +L+
Sbjct: 362 SGGKTLVAEILMLQ 375


>gi|122937434 Rho-guanine nucleotide exchange factor [Homo sapiens]
          Length = 1651

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 22/101 (21%), Positives = 49/101 (48%), Gaps = 2/101 (1%)

Query: 55  ATVEERKKIVASSHDHGYTTLATSVTLLKASEVEEI-LDGNDEKYKAVSISTEPPTYLRE 113
           + ++ ++ +++      Y+  +  ++L K   V E+ +  + E+ +A S+S EPP   R 
Sbjct: 540 SNLQSKESLLSGVRSRSYSCSSPKISLGKTRLVRELTVCSSSEEQRAYSLS-EPPRENRI 598

Query: 114 QKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRT 154
           Q+ + +   +P    S  +  +   S  +NR    R+K +T
Sbjct: 599 QEEEWDKYIIPAKSESEKYKVSRTFSFLMNRMTSPRNKSKT 639


>gi|194328734 PHD finger protein 10 isoform a [Homo sapiens]
          Length = 498

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 16  KFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKIVASSHDHGYTTL 75
           K+  ++ GE+YM+  +V  YL +   S  ++YP L RR  + +E K  +   +    T  
Sbjct: 78  KWPPDETGEYYMLQEQVSEYLGV--TSFKRKYPDLERRDLSHKE-KLYLRELNVITETQC 134

Query: 76  ATSVTLLKASEVEEIL 91
              +T L++ EV +++
Sbjct: 135 TLGLTALRSDEVIDLM 150


>gi|48255937 CD44 antigen isoform 2 precursor [Homo sapiens]
          Length = 699

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 94  NDEKYKAVSISTEPPTYLREQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKR 153
           +DE + + +IST P  +   ++ +  +QW P+  N    L      T ++RN     +  
Sbjct: 256 DDEDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGN 315

Query: 154 TFPLCFDDHDPAVIHENASQPE 175
             P   + H P + HE+  + E
Sbjct: 316 WNP---EAHPPLIHHEHHEEEE 334


>gi|48255935 CD44 antigen isoform 1 precursor [Homo sapiens]
          Length = 742

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 94  NDEKYKAVSISTEPPTYLREQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKR 153
           +DE + + +IST P  +   ++ +  +QW P+  N    L      T ++RN     +  
Sbjct: 299 DDEDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGN 358

Query: 154 TFPLCFDDHDPAVIHENASQPE 175
             P   + H P + HE+  + E
Sbjct: 359 WNP---EAHPPLIHHEHHEEEE 377


>gi|24432077 melanoma associated antigen (mutated) 1-like 1 [Homo
           sapiens]
          Length = 637

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 13/141 (9%)

Query: 78  SVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKRNSQWVPTLPNSSHHLDAVP 137
           S  LL +SE ++ L   D+K +A ++    P+ + E K+ +NS W  T P+ S   D   
Sbjct: 151 SACLLASSESDDSL--YDDKSQAPTMVDTIPSEV-ETKSLQNSSWCETFPSLSEDNDEKE 207

Query: 138 CSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTW 197
                N+N++      +      +    V  E  + P  L P+  DM I  + L++    
Sbjct: 208 -----NKNKIDISAVMSVHSAVKEESACVKDEKFAPP--LSPLSSDMLIMPKALKEESED 260

Query: 198 NMNEKLMTP---EMFSEILCD 215
              E L  P     FSE + D
Sbjct: 261 TCLETLAVPSECSAFSENIED 281


>gi|124494231 dermatan sulfate epimerase precursor [Homo sapiens]
          Length = 958

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 39  FRGSLYKRYPSLWRRLATVEERKKIVASSHDHGYTTLATSVTLLKASEVEEILDGNDEKY 98
           F  + Y  +P L+   A V E +   ASSH+H    L  +V  + +S +E +   + + Y
Sbjct: 35  FTNANYDSHPMLYFSRAEVAELQLRAASSHEHIAARLTEAVHTMLSSPLEYLPPWDPKDY 94

Query: 99  KA 100
            A
Sbjct: 95  SA 96


>gi|7019521 dermatan sulfate epimerase precursor [Homo sapiens]
          Length = 958

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 39  FRGSLYKRYPSLWRRLATVEERKKIVASSHDHGYTTLATSVTLLKASEVEEILDGNDEKY 98
           F  + Y  +P L+   A V E +   ASSH+H    L  +V  + +S +E +   + + Y
Sbjct: 35  FTNANYDSHPMLYFSRAEVAELQLRAASSHEHIAARLTEAVHTMLSSPLEYLPPWDPKDY 94

Query: 99  KA 100
            A
Sbjct: 95  SA 96


>gi|48255959 plasma membrane calcium ATPase 4 isoform 4a [Homo
           sapiens]
          Length = 1170

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 10/84 (11%)

Query: 128 NSSHHLDAVPCSTTINRNRMGRDKKRTFPL----CFDDHDPAVIHENASQPEVLVPIRLD 183
           N   HLDA  C T  N   +  DK  T  +        +   + +     P+V +P  LD
Sbjct: 445 NLVRHLDA--CETMGNATAICSDKTGTLTMNRMTVVQAYIGGIHYRQIPSPDVFLPKVLD 502

Query: 184 MEIDGQKLRDAFTWNMNEKLMTPE 207
           + ++G  +  A+T     K++ PE
Sbjct: 503 LIVNGISINSAYT----SKILPPE 522


>gi|48255957 plasma membrane calcium ATPase 4 isoform 4b [Homo
           sapiens]
          Length = 1205

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 10/84 (11%)

Query: 128 NSSHHLDAVPCSTTINRNRMGRDKKRTFPL----CFDDHDPAVIHENASQPEVLVPIRLD 183
           N   HLDA  C T  N   +  DK  T  +        +   + +     P+V +P  LD
Sbjct: 445 NLVRHLDA--CETMGNATAICSDKTGTLTMNRMTVVQAYIGGIHYRQIPSPDVFLPKVLD 502

Query: 184 MEIDGQKLRDAFTWNMNEKLMTPE 207
           + ++G  +  A+T     K++ PE
Sbjct: 503 LIVNGISINSAYT----SKILPPE 522


>gi|23510323 nephroretinin [Homo sapiens]
          Length = 1426

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 78  SVTLLKASEVEEILDGNDEKYKAVSISTEPPTY 110
           S+ LL++S   EILD N +  +AVS +TEP T+
Sbjct: 597 SMVLLQSSGFPEILDANKQPAEAVS-ATEPVTF 628


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,103,381
Number of Sequences: 37866
Number of extensions: 617571
Number of successful extensions: 1562
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1549
Number of HSP's gapped (non-prelim): 17
length of query: 376
length of database: 18,247,518
effective HSP length: 104
effective length of query: 272
effective length of database: 14,309,454
effective search space: 3892171488
effective search space used: 3892171488
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.