Search of human proteins with 55743122

Search of human proteins with 55743122

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|55743122 retinol-binding protein 4, plasma precursor [Homo
sapiens]
         (201 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|55743122 retinol-binding protein 4, plasma precursor [Homo sa...   421   e-118
gi|4502163 apolipoprotein D precursor [Homo sapiens]                   55   3e-08
gi|4502067 alpha-1-microglobulin/bikunin preproprotein [Homo sap...    38   0.005
gi|65507519 glycodelin precursor [Homo sapiens]                        37   0.015
gi|65507501 glycodelin precursor [Homo sapiens]                        37   0.015
gi|169177936 PREDICTED: similar to hCG1795014 [Homo sapiens]           33   0.16 
gi|169179152 PREDICTED: similar to hCG1795014 [Homo sapiens]           33   0.16 
gi|169181274 PREDICTED: similar to hCG1795014 [Homo sapiens]           33   0.16 
gi|166197660 complement component 8, gamma polypeptide [Homo sap...    32   0.36 
gi|38455402 lipocalin 2 [Homo sapiens]                                 28   4.0  
gi|42714611 lipocalin 15 [Homo sapiens]                                28   4.0  
gi|153792074 proline rich 12 [Homo sapiens]                            28   6.9  
gi|93204865 hypothetical protein LOC57724 [Homo sapiens]               27   9.0  

>gi|55743122 retinol-binding protein 4, plasma precursor [Homo
           sapiens]
          Length = 201

 Score =  421 bits (1081), Expect = e-118
 Identities = 201/201 (100%), Positives = 201/201 (100%)

Query: 1   MKWVWALLLLAALGSGRAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIV 60
           MKWVWALLLLAALGSGRAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIV
Sbjct: 1   MKWVWALLLLAALGSGRAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIV 60

Query: 61  AEFSVDETGQMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGND 120
           AEFSVDETGQMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGND
Sbjct: 61  AEFSVDETGQMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGND 120

Query: 121 DHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLA 180
           DHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLA
Sbjct: 121 DHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLA 180

Query: 181 RQYRLIVHNGYCDGRSERNLL 201
           RQYRLIVHNGYCDGRSERNLL
Sbjct: 181 RQYRLIVHNGYCDGRSERNLL 201


>gi|4502163 apolipoprotein D precursor [Homo sapiens]
          Length = 189

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 56/182 (30%), Positives = 91/182 (50%), Gaps = 45/182 (24%)

Query: 4   VWALLLLAALGS------GRAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQD 57
           V  LLLL+AL        G+A    +  +  V+ENFD  ++ G WY + +K P       
Sbjct: 2   VMLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEI-EKIPTTFENGR 60

Query: 58  NIVAEFSVDETGQMSATAKGRVRLLNNWDVCADMVGTFTDTE---------DPAKFKMKY 108
            I A +S+ E G        ++++LN  ++ AD  GT    E         +PAK ++K+
Sbjct: 61  CIQANYSLMENG--------KIKVLNQ-ELRAD--GTVNQIEGEATPVNLTEPAKLEVKF 109

Query: 109 -WGVASFLQKGNDDHWIVDTDYDTYAVQYSC----RLLNLDGTCADSYSFVFSRDPNGLP 163
            W + S        +WI+ TDY+ YA+ YSC    +L ++D      ++++ +R+PN LP
Sbjct: 110 SWFMPSA------PYWILATDYENYALVYSCTCIIQLFHVD------FAWILARNPN-LP 156

Query: 164 PE 165
           PE
Sbjct: 157 PE 158


>gi|4502067 alpha-1-microglobulin/bikunin preproprotein [Homo
           sapiens]
          Length = 352

 Score = 38.1 bits (87), Expect = 0.005
 Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 24/138 (17%)

Query: 7   LLLLAALGSGRAERDCRVSSFRVKENFDKARFSGTWYAMA--------KKDPEGLFLQDN 58
           LLL A L            + +V+ENF+ +R  G WY +A        KK  + + +   
Sbjct: 9   LLLSACLAVSAGPVPTPPDNIQVQENFNISRIYGKWYNLAIGSTCPWLKKIMDRMTVSTL 68

Query: 59  IVAEFSVDETGQMSATAKGRVRLLNNWDVCADMVGTF--TDTEDPAKFKMKYWGVASFLQ 116
           ++ E + +    M++T   +        VC +  G +  TDT+    +    W +     
Sbjct: 69  VLGEGATEAEISMTSTRWRK-------GVCEETSGAYEKTDTDGKFLYHKSKWNITM--- 118

Query: 117 KGNDDHWIVDTDYDTYAV 134
               + ++V T+YD YA+
Sbjct: 119 ----ESYVVHTNYDEYAI 132


>gi|65507519 glycodelin precursor [Homo sapiens]
          Length = 180

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 11/107 (10%)

Query: 28  RVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWD- 86
           + K++ +  + +GTW++MA      + L   + A   V  T  +         +L+ W+ 
Sbjct: 23  QTKQDLELPKLAGTWHSMAMA-TNNISLMATLKAPLRVHITSLLPTPEDNLEIVLHRWEN 81

Query: 87  -VCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTY 132
             C +       TE+P KFK+ Y           ++  ++DTDYD +
Sbjct: 82  NSCVEKKVLGEKTENPKKFKINYTVA--------NEATLLDTDYDNF 120


>gi|65507501 glycodelin precursor [Homo sapiens]
          Length = 180

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 11/107 (10%)

Query: 28  RVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWD- 86
           + K++ +  + +GTW++MA      + L   + A   V  T  +         +L+ W+ 
Sbjct: 23  QTKQDLELPKLAGTWHSMAMA-TNNISLMATLKAPLRVHITSLLPTPEDNLEIVLHRWEN 81

Query: 87  -VCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTY 132
             C +       TE+P KFK+ Y           ++  ++DTDYD +
Sbjct: 82  NSCVEKKVLGEKTENPKKFKINYTVA--------NEATLLDTDYDNF 120


>gi|169177936 PREDICTED: similar to hCG1795014 [Homo sapiens]
          Length = 181

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 12/136 (8%)

Query: 7   LLLLAALGSGRAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVD 66
           +LLL  LG          ++  V  NFD ++ SG WY++       L   D       ++
Sbjct: 2   MLLLLCLGLTLVCAQEEENNDAVTSNFDLSKISGEWYSV-------LLASD---CREKIE 51

Query: 67  ETGQMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVD 126
           E G M    K  +  L N  +   + G  T+     K   K   + S    G +   I++
Sbjct: 52  EDGSMRVFVK-HIDYLGNSSLTFKLNGNCTEINLACKPTEKN-AICSTDYNGLNVIDILE 109

Query: 127 TDYDTYAVQYSCRLLN 142
           TDYD Y   Y+  + N
Sbjct: 110 TDYDNYIYFYNKNIKN 125


>gi|169179152 PREDICTED: similar to hCG1795014 [Homo sapiens]
          Length = 181

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 12/136 (8%)

Query: 7   LLLLAALGSGRAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVD 66
           +LLL  LG          ++  V  NFD ++ SG WY++       L   D       ++
Sbjct: 2   MLLLLCLGLTLVCAQEEENNDAVTSNFDLSKISGEWYSV-------LLASD---CREKIE 51

Query: 67  ETGQMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVD 126
           E G M    K  +  L N  +   + G  T+     K   K   + S    G +   I++
Sbjct: 52  EDGSMRVFVK-HIDYLGNSSLTFKLNGNCTEINLACKPTEKN-AICSTDYNGLNVIDILE 109

Query: 127 TDYDTYAVQYSCRLLN 142
           TDYD Y   Y+  + N
Sbjct: 110 TDYDNYIYFYNKNIKN 125


>gi|169181274 PREDICTED: similar to hCG1795014 [Homo sapiens]
          Length = 181

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 12/136 (8%)

Query: 7   LLLLAALGSGRAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVD 66
           +LLL  LG          ++  V  NFD ++ SG WY++       L   D       ++
Sbjct: 2   MLLLLCLGLTLVCAQEEENNDAVTSNFDLSKISGEWYSV-------LLASD---CREKIE 51

Query: 67  ETGQMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVD 126
           E G M    K  +  L N  +   + G  T+     K   K   + S    G +   I++
Sbjct: 52  EDGSMRVFVK-HIDYLGNSSLTFKLNGNCTEINLACKPTEKN-AICSTDYNGLNVIDILE 109

Query: 127 TDYDTYAVQYSCRLLN 142
           TDYD Y   Y+  + N
Sbjct: 110 TDYDNYIYFYNKNIKN 125


>gi|166197660 complement component 8, gamma polypeptide [Homo
           sapiens]
          Length = 202

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 13/135 (9%)

Query: 8   LLLAALGSGRAERDCR-----VSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAE 62
           LLLAA   G+  +  R     +S+ + K NFD  +F+GTW  +A         +    AE
Sbjct: 12  LLLAAGSLGQKPQRPRRPASPISTIQPKANFDAQQFAGTWLLVAVGSACRFLQEQGHRAE 71

Query: 63  -FSVDETGQMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDD 121
             ++    Q +A A    R L+   +C  +   + DT    +F ++         +G   
Sbjct: 72  ATTLHVAPQGTAMAVSTFRKLDG--ICWQVRQLYGDTGVLGRFLLQARDA-----RGAVH 124

Query: 122 HWIVDTDYDTYAVQY 136
             + +TDY ++AV Y
Sbjct: 125 VVVAETDYQSFAVLY 139


>gi|38455402 lipocalin 2 [Homo sapiens]
          Length = 198

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 29/126 (23%)

Query: 24  VSSFRVKENFDKARFSGTWYAMA---------KKDPEGLFLQDNIVAEFSVDETGQMSAT 74
           +S   +++NF   +F G WY +           KDP+ ++     + E   D++  +++ 
Sbjct: 33  LSKVPLQQNFQDNQFQGKWYVVGLAGNAILREDKDPQKMYA---TIYELKEDKSYNVTS- 88

Query: 75  AKGRVRLLNNWDVCADMVGTFTDTEDPAKFKM----KYWGVASFLQKGNDDHWIVDTDYD 130
                 +L     C   + TF     P +F +     Y G+ S+L +      +V T+Y+
Sbjct: 89  ------VLFRKKKCDYWIRTFVPGCQPGEFTLGNIKSYPGLTSYLVR------VVSTNYN 136

Query: 131 TYAVQY 136
            +A+ +
Sbjct: 137 QHAMVF 142


>gi|42714611 lipocalin 15 [Homo sapiens]
          Length = 184

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 14/111 (12%)

Query: 29  VKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNW--- 85
           ++ +F+  +FSG WY ++      +FL        S   T  +  T +G + +   +   
Sbjct: 24  LQPDFNAEKFSGLWYVVSMASDCRVFLGKKDHLSMS---TRAIRPTEEGGLHVHMEFPGA 80

Query: 86  DVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQY 136
           D C  +   +        F++   G          D  IVDTDY ++AV Y
Sbjct: 81  DGCNQVDAEYLKVGSEGHFRVPALGYL--------DVRIVDTDYSSFAVLY 123


>gi|153792074 proline rich 12 [Homo sapiens]
          Length = 2036

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 40  GTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRL 81
           GT Y +AK+DP+   LQ  I    S+DE G  +A   G  RL
Sbjct: 685 GTPYELAKEDPQRYHLQSVIRTSASLDE-GATAALELGLGRL 725


>gi|93204865 hypothetical protein LOC57724 [Homo sapiens]
          Length = 2579

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/54 (31%), Positives = 24/54 (44%)

Query: 68   TGQMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDD 121
            +G  S   K    +L N  +C+ +   FT    PA+F   Y  V  FL + N D
Sbjct: 1707 SGIKSECRKVLETILKNSRLCSLLSPFFTPNAAPAEFIQLYEQVVKFLSEDNSD 1760


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.136    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,863,473
Number of Sequences: 37866
Number of extensions: 326535
Number of successful extensions: 608
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 596
Number of HSP's gapped (non-prelim): 13
length of query: 201
length of database: 18,247,518
effective HSP length: 97
effective length of query: 104
effective length of database: 14,574,516
effective search space: 1515749664
effective search space used: 1515749664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.