Search of human proteins with 54859722

Search of human proteins with 54859722

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|54859722 nucleoporin 160kDa [Homo sapiens]
         (1436 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|54859722 nucleoporin 160kDa [Homo sapiens]                        2892   0.0  
gi|217330639 phosphoinositide-3-kinase, regulatory subunit 5 [Ho...    37   0.14 
gi|217330622 phosphoinositide-3-kinase, regulatory subunit 5 [Ho...    37   0.14 
gi|156139141 FAD-dependent oxidoreductase domain containing 2 [H...    33   2.0  
gi|156139139 FAD-dependent oxidoreductase domain containing 2 [H...    33   2.0  
gi|45580730 aminoadipate-semialdehyde dehydrogenase [Homo sapiens]     33   2.6  
gi|27262645 ataxin 2 related protein isoform B [Homo sapiens]          32   3.4  
gi|27262638 sperm associated antigen 1 [Homo sapiens]                  32   3.4  
gi|27262653 ataxin 2 related protein isoform E [Homo sapiens]          32   3.4  
gi|27262636 sperm associated antigen 1 [Homo sapiens]                  32   3.4  
gi|27262649 ataxin 2 related protein isoform C [Homo sapiens]          32   3.4  
gi|27262647 ataxin 2 related protein isoform A [Homo sapiens]          32   3.4  
gi|27262651 ataxin 2 related protein isoform D [Homo sapiens]          32   3.4  
gi|66880553 Fanconi anemia, complementation group A isoform a [H...    32   4.4  
gi|189571583 intercellular adhesion molecule 5 precursor [Homo s...    32   5.7  
gi|84798622 mannosidase, beta A, lysosomal [Homo sapiens]              32   5.7  
gi|4557741 platelet-activating factor acetylhydrolase, isoform I...    31   9.8  

>gi|54859722 nucleoporin 160kDa [Homo sapiens]
          Length = 1436

 Score = 2892 bits (7497), Expect = 0.0
 Identities = 1436/1436 (100%), Positives = 1436/1436 (100%)

Query: 1    MLHLSAAPPAPPPEVTATARPCLCSVGRRGDGGKMAAAGALERSFVELSGAERERPRHFR 60
            MLHLSAAPPAPPPEVTATARPCLCSVGRRGDGGKMAAAGALERSFVELSGAERERPRHFR
Sbjct: 1    MLHLSAAPPAPPPEVTATARPCLCSVGRRGDGGKMAAAGALERSFVELSGAERERPRHFR 60

Query: 61   EFTVCSIGTANAVAGAVKYSESAGGFYYVESGKLFSVTRNRFIHWKTSGDTLELMEESLD 120
            EFTVCSIGTANAVAGAVKYSESAGGFYYVESGKLFSVTRNRFIHWKTSGDTLELMEESLD
Sbjct: 61   EFTVCSIGTANAVAGAVKYSESAGGFYYVESGKLFSVTRNRFIHWKTSGDTLELMEESLD 120

Query: 121  INLLNNAIRLKFQNCSVLPGGVYVSETQNRVIILMLTNQTVHRLLLPHPSRMYRSELVVD 180
            INLLNNAIRLKFQNCSVLPGGVYVSETQNRVIILMLTNQTVHRLLLPHPSRMYRSELVVD
Sbjct: 121  INLLNNAIRLKFQNCSVLPGGVYVSETQNRVIILMLTNQTVHRLLLPHPSRMYRSELVVD 180

Query: 181  SQMQSIFTDIGKVDFTDPCNYQLIPAVPGISPNSTASTAWLSSDGEALFALPCASGGIFV 240
            SQMQSIFTDIGKVDFTDPCNYQLIPAVPGISPNSTASTAWLSSDGEALFALPCASGGIFV
Sbjct: 181  SQMQSIFTDIGKVDFTDPCNYQLIPAVPGISPNSTASTAWLSSDGEALFALPCASGGIFV 240

Query: 241  LKLPPYDIPGMVSVVELKQSSVMQRLLTGWMPTAIRGDQSPSDRPLSLAVHCVEHDAFIF 300
            LKLPPYDIPGMVSVVELKQSSVMQRLLTGWMPTAIRGDQSPSDRPLSLAVHCVEHDAFIF
Sbjct: 241  LKLPPYDIPGMVSVVELKQSSVMQRLLTGWMPTAIRGDQSPSDRPLSLAVHCVEHDAFIF 300

Query: 301  ALCQDHKLRMWSYKEQMCLMVADMLEYVPVKKDLRLTAGTGHKLRLAYSPTMGLYLGIYM 360
            ALCQDHKLRMWSYKEQMCLMVADMLEYVPVKKDLRLTAGTGHKLRLAYSPTMGLYLGIYM
Sbjct: 301  ALCQDHKLRMWSYKEQMCLMVADMLEYVPVKKDLRLTAGTGHKLRLAYSPTMGLYLGIYM 360

Query: 361  HAPKRGQFCIFQLVSTESNRYSLDHISSLFTSQETLIDFALTSTDIWALWHDAENQTVVK 420
            HAPKRGQFCIFQLVSTESNRYSLDHISSLFTSQETLIDFALTSTDIWALWHDAENQTVVK
Sbjct: 361  HAPKRGQFCIFQLVSTESNRYSLDHISSLFTSQETLIDFALTSTDIWALWHDAENQTVVK 420

Query: 421  YINFEHNVAGQWNPVFMQPLPEEEIVIRDDQDPREMYLQSLFTPGQFTNEALCKALQIFC 480
            YINFEHNVAGQWNPVFMQPLPEEEIVIRDDQDPREMYLQSLFTPGQFTNEALCKALQIFC
Sbjct: 421  YINFEHNVAGQWNPVFMQPLPEEEIVIRDDQDPREMYLQSLFTPGQFTNEALCKALQIFC 480

Query: 481  RGTERNLDLSWSELKKEVTLAVENELQGSVTEYEFSQEEFRNLQQEFWCKFYACCLQYQE 540
            RGTERNLDLSWSELKKEVTLAVENELQGSVTEYEFSQEEFRNLQQEFWCKFYACCLQYQE
Sbjct: 481  RGTERNLDLSWSELKKEVTLAVENELQGSVTEYEFSQEEFRNLQQEFWCKFYACCLQYQE 540

Query: 541  ALSHPLALHLNPHTNMVCLLKKGYLSFLIPSSLVDHLYLLPYENLLTEDETTISDDVDIA 600
            ALSHPLALHLNPHTNMVCLLKKGYLSFLIPSSLVDHLYLLPYENLLTEDETTISDDVDIA
Sbjct: 541  ALSHPLALHLNPHTNMVCLLKKGYLSFLIPSSLVDHLYLLPYENLLTEDETTISDDVDIA 600

Query: 601  RDVICLIKCLRLIEESVTVDMSVIMEMSCYNLQSPEKAAEQILEDMITIDVENVMEDICS 660
            RDVICLIKCLRLIEESVTVDMSVIMEMSCYNLQSPEKAAEQILEDMITIDVENVMEDICS
Sbjct: 601  RDVICLIKCLRLIEESVTVDMSVIMEMSCYNLQSPEKAAEQILEDMITIDVENVMEDICS 660

Query: 661  KLQEIRNPIHAIGLLIREMDYETEVEMEKGFNPAQPLNIRMNLTQLYGSNTAGYIVCRGV 720
            KLQEIRNPIHAIGLLIREMDYETEVEMEKGFNPAQPLNIRMNLTQLYGSNTAGYIVCRGV
Sbjct: 661  KLQEIRNPIHAIGLLIREMDYETEVEMEKGFNPAQPLNIRMNLTQLYGSNTAGYIVCRGV 720

Query: 721  HKIASTRFLICRDLLILQQLLMRLGDAVIWGTGQLFQAQQDLLHRTAPLLLSYYLIKWGS 780
            HKIASTRFLICRDLLILQQLLMRLGDAVIWGTGQLFQAQQDLLHRTAPLLLSYYLIKWGS
Sbjct: 721  HKIASTRFLICRDLLILQQLLMRLGDAVIWGTGQLFQAQQDLLHRTAPLLLSYYLIKWGS 780

Query: 781  ECLATDVPLDTLESNLQHLSVLELTDSGALMANRFVSSPQTIVELFFQEVARKHIISHLF 840
            ECLATDVPLDTLESNLQHLSVLELTDSGALMANRFVSSPQTIVELFFQEVARKHIISHLF
Sbjct: 781  ECLATDVPLDTLESNLQHLSVLELTDSGALMANRFVSSPQTIVELFFQEVARKHIISHLF 840

Query: 841  SQPKAPLSQTGLNWPEMITAITSYLLQLLWPSNPGCLFLECLMGNCQYVQLQDYIQLLHP 900
            SQPKAPLSQTGLNWPEMITAITSYLLQLLWPSNPGCLFLECLMGNCQYVQLQDYIQLLHP
Sbjct: 841  SQPKAPLSQTGLNWPEMITAITSYLLQLLWPSNPGCLFLECLMGNCQYVQLQDYIQLLHP 900

Query: 901  WCQVNVGSCRFMLGRCYLVTGEGQKALECFCQAASEVGKEEFLDRLIRSEDGEIVSTPRL 960
            WCQVNVGSCRFMLGRCYLVTGEGQKALECFCQAASEVGKEEFLDRLIRSEDGEIVSTPRL
Sbjct: 901  WCQVNVGSCRFMLGRCYLVTGEGQKALECFCQAASEVGKEEFLDRLIRSEDGEIVSTPRL 960

Query: 961  QYYDKVLRLLDVIGLPELVIQLATSAITEAGDDWKSQATLRTCIFKHHLDLGHNSQAYEA 1020
            QYYDKVLRLLDVIGLPELVIQLATSAITEAGDDWKSQATLRTCIFKHHLDLGHNSQAYEA
Sbjct: 961  QYYDKVLRLLDVIGLPELVIQLATSAITEAGDDWKSQATLRTCIFKHHLDLGHNSQAYEA 1020

Query: 1021 LTQIPDSSRQLDCLRQLVVVLCERSQLQDLVEFPYVNLHNEVVGIIESRARAVDLMTHNY 1080
            LTQIPDSSRQLDCLRQLVVVLCERSQLQDLVEFPYVNLHNEVVGIIESRARAVDLMTHNY
Sbjct: 1021 LTQIPDSSRQLDCLRQLVVVLCERSQLQDLVEFPYVNLHNEVVGIIESRARAVDLMTHNY 1080

Query: 1081 YELLYAFHIYRHNYRKAGTVMFEYGMRLGREVRTLRGLEKQGNCYLAALNCLRLIRPEYA 1140
            YELLYAFHIYRHNYRKAGTVMFEYGMRLGREVRTLRGLEKQGNCYLAALNCLRLIRPEYA
Sbjct: 1081 YELLYAFHIYRHNYRKAGTVMFEYGMRLGREVRTLRGLEKQGNCYLAALNCLRLIRPEYA 1140

Query: 1141 WIVQPVSGAVYDRPGASPKRNHDGECTAAPTNRQIEILELEDLEKECSLARIRLTLAQHD 1200
            WIVQPVSGAVYDRPGASPKRNHDGECTAAPTNRQIEILELEDLEKECSLARIRLTLAQHD
Sbjct: 1141 WIVQPVSGAVYDRPGASPKRNHDGECTAAPTNRQIEILELEDLEKECSLARIRLTLAQHD 1200

Query: 1201 PSAVAVAGSSSAEEMVTLLVQAGLFDTAISLCQTFKLPLTPVFEGLAFKCIKLQFGGEAA 1260
            PSAVAVAGSSSAEEMVTLLVQAGLFDTAISLCQTFKLPLTPVFEGLAFKCIKLQFGGEAA
Sbjct: 1201 PSAVAVAGSSSAEEMVTLLVQAGLFDTAISLCQTFKLPLTPVFEGLAFKCIKLQFGGEAA 1260

Query: 1261 QAEAWAWLAANQLSSVITTKESSATDEAWRLLSTYLERYKVQNNLYHHCVINKLLSHGVP 1320
            QAEAWAWLAANQLSSVITTKESSATDEAWRLLSTYLERYKVQNNLYHHCVINKLLSHGVP
Sbjct: 1261 QAEAWAWLAANQLSSVITTKESSATDEAWRLLSTYLERYKVQNNLYHHCVINKLLSHGVP 1320

Query: 1321 LPNWLINSYKKVDAAELLRLYLNYDLLEEAVDLVSEYVDAVLGKGHQYFGIEFPLSATAP 1380
            LPNWLINSYKKVDAAELLRLYLNYDLLEEAVDLVSEYVDAVLGKGHQYFGIEFPLSATAP
Sbjct: 1321 LPNWLINSYKKVDAAELLRLYLNYDLLEEAVDLVSEYVDAVLGKGHQYFGIEFPLSATAP 1380

Query: 1381 MVWLPYSSIDQLLQALGENSANSHNIALSQKILDKLEDYQQKVDKATRDLLYRRTL 1436
            MVWLPYSSIDQLLQALGENSANSHNIALSQKILDKLEDYQQKVDKATRDLLYRRTL
Sbjct: 1381 MVWLPYSSIDQLLQALGENSANSHNIALSQKILDKLEDYQQKVDKATRDLLYRRTL 1436


>gi|217330639 phosphoinositide-3-kinase, regulatory subunit 5 [Homo
           sapiens]
          Length = 880

 Score = 37.0 bits (84), Expect = 0.14
 Identities = 17/59 (28%), Positives = 32/59 (54%)

Query: 659 CSKLQEIRNPIHAIGLLIREMDYETEVEMEKGFNPAQPLNIRMNLTQLYGSNTAGYIVC 717
           C K +E+ + + A+ L + E+      + +KGFN      I+++  Q+ GSN+  + VC
Sbjct: 760 CRKQEELDSSMEALTLNLTEVVKRQNSKSKKGFNQISTSQIKVDKVQIIGSNSCPFAVC 818


>gi|217330622 phosphoinositide-3-kinase, regulatory subunit 5 [Homo
           sapiens]
          Length = 880

 Score = 37.0 bits (84), Expect = 0.14
 Identities = 17/59 (28%), Positives = 32/59 (54%)

Query: 659 CSKLQEIRNPIHAIGLLIREMDYETEVEMEKGFNPAQPLNIRMNLTQLYGSNTAGYIVC 717
           C K +E+ + + A+ L + E+      + +KGFN      I+++  Q+ GSN+  + VC
Sbjct: 760 CRKQEELDSSMEALTLNLTEVVKRQNSKSKKGFNQISTSQIKVDKVQIIGSNSCPFAVC 818


>gi|156139141 FAD-dependent oxidoreductase domain containing 2 [Homo
           sapiens]
          Length = 684

 Score = 33.1 bits (74), Expect = 2.0
 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 14/81 (17%)

Query: 221 LSSDGEALFALPCASGGIFVLKLPPY------DIPGMVSVVELKQSSVMQRLLTGWMPTA 274
           L +D  + +A  C    +   KLPP+       + G+VS   L Q  V  RLL  + PT 
Sbjct: 589 LDTDLRSFYAESCFLFALTRQKLPPFCQQGYLRMQGLVSTESLWQHRVESRLLRDYAPTG 648

Query: 275 IR--------GDQSPSDRPLS 287
            R        GDQ P   PL+
Sbjct: 649 RRLEDSSQQLGDQEPLGSPLA 669


>gi|156139139 FAD-dependent oxidoreductase domain containing 2 [Homo
           sapiens]
          Length = 684

 Score = 33.1 bits (74), Expect = 2.0
 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 14/81 (17%)

Query: 221 LSSDGEALFALPCASGGIFVLKLPPY------DIPGMVSVVELKQSSVMQRLLTGWMPTA 274
           L +D  + +A  C    +   KLPP+       + G+VS   L Q  V  RLL  + PT 
Sbjct: 589 LDTDLRSFYAESCFLFALTRQKLPPFCQQGYLRMQGLVSTESLWQHRVESRLLRDYAPTG 648

Query: 275 IR--------GDQSPSDRPLS 287
            R        GDQ P   PL+
Sbjct: 649 RRLEDSSQQLGDQEPLGSPLA 669


>gi|45580730 aminoadipate-semialdehyde dehydrogenase [Homo sapiens]
          Length = 1098

 Score = 32.7 bits (73), Expect = 2.6
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 15/93 (16%)

Query: 1254 QFGGEAAQAEAWA--WLAANQLSSVITTKESSATDEAWRLLSTYLERYKVQNNLYHHCVI 1311
            Q   E  Q E+ A  W    +L   + +K++S  +  ++ L  YL  + V + L      
Sbjct: 461  QVAEELQQVESCAVTWYNQEKLILFMVSKDASVKEYIFKELQKYLPSHAVPDEL------ 514

Query: 1312 NKLLSHGVPLPNWLINSYKKVDAAELLRLYLNY 1344
              +L   +P       S+ K+D +EL ++YLNY
Sbjct: 515  --VLIDSLPF-----TSHGKIDVSELNKIYLNY 540


>gi|27262645 ataxin 2 related protein isoform B [Homo sapiens]
          Length = 1062

 Score = 32.3 bits (72), Expect = 3.4
 Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 4/40 (10%)

Query: 2  LHLSAAPPAPPPEVTATARPCLCSVGRRGDGGKMAAAGAL 41
          L  SAAPP PP    A A PCL  V   G G +  A G L
Sbjct: 42 LATSAAPPGPP----AAASPCLGPVAAAGSGLRRGAEGIL 77


>gi|27262638 sperm associated antigen 1 [Homo sapiens]
          Length = 926

 Score = 32.3 bits (72), Expect = 3.4
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 14/82 (17%)

Query: 9   PAPPPEVTATARPCLCS-----VGRRGDGGKMAAAGALERSFVELSGAERERPRHFREFT 63
           PA P      A+PC+       +  + +GGK  A GA +R     +GA++  PR      
Sbjct: 367 PAEPAGAARAAQPCVMGNIQKKLTGKAEGGKRPARGAPQRGQTPEAGADKRSPRR----- 421

Query: 64  VCSIGTANAVAGAVKYSESAGG 85
                +A A AG        GG
Sbjct: 422 ----ASAAAAAGGGATGHPGGG 439


>gi|27262653 ataxin 2 related protein isoform E [Homo sapiens]
          Length = 1044

 Score = 32.3 bits (72), Expect = 3.4
 Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 4/40 (10%)

Query: 2  LHLSAAPPAPPPEVTATARPCLCSVGRRGDGGKMAAAGAL 41
          L  SAAPP PP    A A PCL  V   G G +  A G L
Sbjct: 42 LATSAAPPGPP----AAASPCLGPVAAAGSGLRRGAEGIL 77


>gi|27262636 sperm associated antigen 1 [Homo sapiens]
          Length = 926

 Score = 32.3 bits (72), Expect = 3.4
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 14/82 (17%)

Query: 9   PAPPPEVTATARPCLCS-----VGRRGDGGKMAAAGALERSFVELSGAERERPRHFREFT 63
           PA P      A+PC+       +  + +GGK  A GA +R     +GA++  PR      
Sbjct: 367 PAEPAGAARAAQPCVMGNIQKKLTGKAEGGKRPARGAPQRGQTPEAGADKRSPRR----- 421

Query: 64  VCSIGTANAVAGAVKYSESAGG 85
                +A A AG        GG
Sbjct: 422 ----ASAAAAAGGGATGHPGGG 439


>gi|27262649 ataxin 2 related protein isoform C [Homo sapiens]
          Length = 1097

 Score = 32.3 bits (72), Expect = 3.4
 Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 4/40 (10%)

Query: 2  LHLSAAPPAPPPEVTATARPCLCSVGRRGDGGKMAAAGAL 41
          L  SAAPP PP    A A PCL  V   G G +  A G L
Sbjct: 42 LATSAAPPGPP----AAASPCLGPVAAAGSGLRRGAEGIL 77


>gi|27262647 ataxin 2 related protein isoform A [Homo sapiens]
          Length = 1075

 Score = 32.3 bits (72), Expect = 3.4
 Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 4/40 (10%)

Query: 2  LHLSAAPPAPPPEVTATARPCLCSVGRRGDGGKMAAAGAL 41
          L  SAAPP PP    A A PCL  V   G G +  A G L
Sbjct: 42 LATSAAPPGPP----AAASPCLGPVAAAGSGLRRGAEGIL 77


>gi|27262651 ataxin 2 related protein isoform D [Homo sapiens]
          Length = 1044

 Score = 32.3 bits (72), Expect = 3.4
 Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 4/40 (10%)

Query: 2  LHLSAAPPAPPPEVTATARPCLCSVGRRGDGGKMAAAGAL 41
          L  SAAPP PP    A A PCL  V   G G +  A G L
Sbjct: 42 LATSAAPPGPP----AAASPCLGPVAAAGSGLRRGAEGIL 77


>gi|66880553 Fanconi anemia, complementation group A isoform a [Homo
            sapiens]
          Length = 1455

 Score = 32.0 bits (71), Expect = 4.4
 Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 20/110 (18%)

Query: 656  EDICSKLQEIRNPIHAIGLLIREMDYETEVEMEKGFNPAQPLNIRMNLTQLYGSNTAGYI 715
            EDI S+LQE          ++ +++ + ++ +  G  P+Q   +     +   + T+G+ 
Sbjct: 1015 EDIISRLQE----------MVADLELQQDLIVPLGHTPSQEHFLFEIFRRRLQALTSGWS 1064

Query: 716  VCRGVHKIASTRFLICRDLLILQQLLMRLGDAVIWGTGQLFQAQQDLLHR 765
            V   + +         R+LL+ +++L+RL  +V+ G+   FQA+Q +  R
Sbjct: 1065 VAASLQRQ--------RELLMYKRILLRLPSSVLCGSS--FQAEQPITAR 1104


>gi|189571583 intercellular adhesion molecule 5 precursor [Homo
           sapiens]
          Length = 924

 Score = 31.6 bits (70), Expect = 5.7
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 7/88 (7%)

Query: 11  PPPEVTATARPCLCSVGRRGDGGKMAAAGALERSFVELS-GAERERPRHFREFTVCSIG- 68
           PP +++  A P   ++G   +   ++ AGA+     E    A     RH R  TV   G 
Sbjct: 775 PPAQISWRAPPGALNIGLSSNNSTLSVAGAMGSHGGEYECAATNAHGRHARRITVRVAGP 834

Query: 69  -----TANAVAGAVKYSESAGGFYYVES 91
                   A  GA   +  AG  +YV+S
Sbjct: 835 WLWVAVGGAAGGAALLAAGAGLAFYVQS 862


>gi|84798622 mannosidase, beta A, lysosomal [Homo sapiens]
          Length = 879

 Score = 31.6 bits (70), Expect = 5.7
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 1343 NYDLL---EEAVDLVSEYVDAVLGKGHQYFGIEFPLSATAPMVWLPYSSI 1389
            NY  L   +EAV L    + A++ +    F  +   SA AP VWL   SI
Sbjct: 786  NYHFLSSPKEAVGLCKAQITAIISQQGDIFVFDLETSAVAPFVWLDVGSI 835


>gi|4557741 platelet-activating factor acetylhydrolase, isoform Ib,
           alpha subunit [Homo sapiens]
          Length = 410

 Score = 30.8 bits (68), Expect = 9.8
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 298 FIFALCQDHKLRMWSYKEQMCLMVADMLEYVPVKKDLRLTA 338
           FI +   D  LR+W YK + C+   +  E+     D   TA
Sbjct: 352 FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA 392


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,562,822
Number of Sequences: 37866
Number of extensions: 2380904
Number of successful extensions: 6130
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 6109
Number of HSP's gapped (non-prelim): 26
length of query: 1436
length of database: 18,247,518
effective HSP length: 115
effective length of query: 1321
effective length of database: 13,892,928
effective search space: 18352557888
effective search space used: 18352557888
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.