Search of human proteins with 52426768

Search of human proteins with 52426768

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|52426768 HESB like domain containing 2 [Homo sapiens]
         (129 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|52426768 HESB like domain containing 2 [Homo sapiens]              256   3e-69
gi|122937394 iron-sulfur cluster assembly 1 homolog (S. cerevisi...   206   4e-54
gi|160420328 iron-sulfur cluster assembly 2 [Homo sapiens]             54   4e-08
gi|151101449 solute carrier family 4, sodium bicarbonate cotrans...    29   0.90 
gi|48762691 calcium-transporting ATPase 2C1 isoform 1b [Homo sap...    28   2.0  
gi|48762689 calcium-transporting ATPase 2C1 isoform 1d [Homo sap...    28   2.0  
gi|48762687 calcium-transporting ATPase 2C1 isoform 1c [Homo sap...    28   2.0  
gi|48762685 calcium-transporting ATPase 2C1 isoform 1a [Homo sap...    28   2.0  
gi|4758942 septin 4 isoform 1 [Homo sapiens]                           27   5.8  
gi|17986247 septin 4 isoform 3 [Homo sapiens]                          27   5.8  
gi|21040371 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Homo sapi...    26   9.9  

>gi|52426768 HESB like domain containing 2 [Homo sapiens]
          Length = 129

 Score =  256 bits (654), Expect = 3e-69
 Identities = 129/129 (100%), Positives = 129/129 (100%)

Query: 1   MSASLVRATVRAVSKRKLQPTRAALTLTPSAVNKIKQLLKDKPEHVGVKVGVRTRGCNGL 60
           MSASLVRATVRAVSKRKLQPTRAALTLTPSAVNKIKQLLKDKPEHVGVKVGVRTRGCNGL
Sbjct: 1   MSASLVRATVRAVSKRKLQPTRAALTLTPSAVNKIKQLLKDKPEHVGVKVGVRTRGCNGL 60

Query: 61  SYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGT 120
           SYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGT
Sbjct: 61  SYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGT 120

Query: 121 CGCGESFNI 129
           CGCGESFNI
Sbjct: 121 CGCGESFNI 129


>gi|122937394 iron-sulfur cluster assembly 1 homolog (S.
           cerevisiae)-like [Homo sapiens]
          Length = 132

 Score =  206 bits (524), Expect = 4e-54
 Identities = 106/108 (98%), Positives = 106/108 (98%)

Query: 1   MSASLVRATVRAVSKRKLQPTRAALTLTPSAVNKIKQLLKDKPEHVGVKVGVRTRGCNGL 60
           MS SLVRAT RAVSKRKLQPTRAALTLTPSAVNKIKQLLKDKPEHVGVKVGVRTRGCNGL
Sbjct: 1   MSPSLVRATARAVSKRKLQPTRAALTLTPSAVNKIKQLLKDKPEHVGVKVGVRTRGCNGL 60

Query: 61  SYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSS 108
           SYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSS
Sbjct: 61  SYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSS 108


>gi|160420328 iron-sulfur cluster assembly 2 [Homo sapiens]
          Length = 154

 Score = 53.5 bits (127), Expect = 4e-08
 Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 4/130 (3%)

Query: 1   MSASLVRATVRAVSKRKLQPTRAALTLTPSAVNKIKQLLKDKPEHVGVKVGVRTRGCNGL 60
           ++ASL     R  S    +     + LT S V ++ ++ +       +++ V   GC+G 
Sbjct: 26  LTASLGPQARREASSSSPEAGEGQIRLTDSCVQRLLEITEGSEF---LRLQVEGGGCSGF 82

Query: 61  SYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEF-VFNNPNIKG 119
            Y           D    Q G RV ++  +   + G ++D+ ++ + S F V NNP  + 
Sbjct: 83  QYKFSLDTVINPDDRVFEQGGARVVVDSDSLAFVKGAQVDFSQELIRSSFQVLNNPQAQQ 142

Query: 120 TCGCGESFNI 129
            C CG SF+I
Sbjct: 143 GCSCGSSFSI 152


>gi|151101449 solute carrier family 4, sodium bicarbonate
           cotransporter, member 9 [Homo sapiens]
          Length = 959

 Score = 29.3 bits (64), Expect = 0.90
 Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 3/96 (3%)

Query: 26  TLTPSAVNKIKQLLKDKPEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEEVIQDGVRVF 85
           +L+P    +++ LL  +P+H     G  TR C G ++  + +  +     E  Q+ +R  
Sbjct: 138 SLSPELRGQLQALLLQRPQHYNQTTG--TRPCWGSTHPRKASDNEEAPLREQCQNPLRQK 195

Query: 86  IEKKAQL-TLLGTEMDYVEDKLSSEFVFNNPNIKGT 120
           +   A+  T+L  E+ ++   L +     NP + G+
Sbjct: 196 LPPGAEAGTVLAGELGFLAQPLGAFVRLRNPVVLGS 231


>gi|48762691 calcium-transporting ATPase 2C1 isoform 1b [Homo
           sapiens]
          Length = 939

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 43  PEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYV 102
           P   GVK  V T   +G+S  +      GDS E  +    R+ +  K   ++ G E+D +
Sbjct: 547 PPRTGVKEAVTTLIASGVSIKM----ITGDSQETAVAIASRLGLYSKTSQSVSGEEIDAM 602

Query: 103 EDKLSSEFV 111
           + +  S+ V
Sbjct: 603 DVQQLSQIV 611


>gi|48762689 calcium-transporting ATPase 2C1 isoform 1d [Homo
           sapiens]
          Length = 949

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 43  PEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYV 102
           P   GVK  V T   +G+S  +      GDS E  +    R+ +  K   ++ G E+D +
Sbjct: 547 PPRTGVKEAVTTLIASGVSIKM----ITGDSQETAVAIASRLGLYSKTSQSVSGEEIDAM 602

Query: 103 EDKLSSEFV 111
           + +  S+ V
Sbjct: 603 DVQQLSQIV 611


>gi|48762687 calcium-transporting ATPase 2C1 isoform 1c [Homo
           sapiens]
          Length = 888

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 43  PEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYV 102
           P   GVK  V T   +G+S  +      GDS E  +    R+ +  K   ++ G E+D +
Sbjct: 547 PPRTGVKEAVTTLIASGVSIKM----ITGDSQETAVAIASRLGLYSKTSQSVSGEEIDAM 602

Query: 103 EDKLSSEFV 111
           + +  S+ V
Sbjct: 603 DVQQLSQIV 611


>gi|48762685 calcium-transporting ATPase 2C1 isoform 1a [Homo
           sapiens]
          Length = 919

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 43  PEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYV 102
           P   GVK  V T   +G+S  +      GDS E  +    R+ +  K   ++ G E+D +
Sbjct: 547 PPRTGVKEAVTTLIASGVSIKM----ITGDSQETAVAIASRLGLYSKTSQSVSGEEIDAM 602

Query: 103 EDKLSSEFV 111
           + +  S+ V
Sbjct: 603 DVQQLSQIV 611


>gi|4758942 septin 4 isoform 1 [Homo sapiens]
          Length = 478

 Score = 26.6 bits (57), Expect = 5.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)

Query: 26  TLTPSAVNKIKQLLKDKPEHVGVKV 50
           TLTP  V+  K+ ++++ EH G+K+
Sbjct: 293 TLTPPEVDHKKRKIREEIEHFGIKI 317


>gi|17986247 septin 4 isoform 3 [Homo sapiens]
          Length = 459

 Score = 26.6 bits (57), Expect = 5.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)

Query: 26  TLTPSAVNKIKQLLKDKPEHVGVKV 50
           TLTP  V+  K+ ++++ EH G+K+
Sbjct: 274 TLTPPEVDHKKRKIREEIEHFGIKI 298


>gi|21040371 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Homo
           sapiens]
          Length = 427

 Score = 25.8 bits (55), Expect = 9.9
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 78  IQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSE 109
           +QD + VF++ + +LTL G +  YV+ K S +
Sbjct: 242 MQDPMEVFVDDETKLTLHGLQQYYVKLKDSEK 273


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.132    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,293,055
Number of Sequences: 37866
Number of extensions: 161410
Number of successful extensions: 308
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 301
Number of HSP's gapped (non-prelim): 11
length of query: 129
length of database: 18,247,518
effective HSP length: 90
effective length of query: 39
effective length of database: 14,839,578
effective search space: 578743542
effective search space used: 578743542
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.