Search of human proteins with 51972212

Search of human proteins with 51972212

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|51972212 transmembrane protein 195 [Homo sapiens]
         (445 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|51972212 transmembrane protein 195 [Homo sapiens]                  921   0.0  
gi|68160945 sterol-C5-desaturase [Homo sapiens]                        44   4e-04
gi|68160941 sterol-C5-desaturase [Homo sapiens]                        44   4e-04
gi|5803157 sterol-C4-methyl oxidase-like isoform 1 [Homo sapiens]      43   7e-04
gi|62865628 sterol-C4-methyl oxidase-like isoform 2 [Homo sapiens]     40   0.003
gi|146198575 hypothetical protein LOC10826 isoform 2 [Homo sapiens]    31   2.6  
gi|119964728 D-2-hydroxyglutarate dehydrogenase precursor [Homo ...    29   9.9  
gi|4505463 contactin associated protein 1 precursor [Homo sapiens]     29   9.9  

>gi|51972212 transmembrane protein 195 [Homo sapiens]
          Length = 445

 Score =  921 bits (2381), Expect = 0.0
 Identities = 445/445 (100%), Positives = 445/445 (100%)

Query: 1   MKNPEAQQDVSVSQGFRMLFYTMKPSETSFQTLEEVPDYVKKATPFFISLMLLELVVSWI 60
           MKNPEAQQDVSVSQGFRMLFYTMKPSETSFQTLEEVPDYVKKATPFFISLMLLELVVSWI
Sbjct: 1   MKNPEAQQDVSVSQGFRMLFYTMKPSETSFQTLEEVPDYVKKATPFFISLMLLELVVSWI 60

Query: 61  LKGKPPGRLDDALTSISAGVLSRLPSLFFRSIELTSYIYIWENYRLFNLPWDSPWTWYSA 120
           LKGKPPGRLDDALTSISAGVLSRLPSLFFRSIELTSYIYIWENYRLFNLPWDSPWTWYSA
Sbjct: 61  LKGKPPGRLDDALTSISAGVLSRLPSLFFRSIELTSYIYIWENYRLFNLPWDSPWTWYSA 120

Query: 121 FLGVDFGYYWFHRMAHEVNIMWAGHQTHHSSEDYNLSTALRQSVLQIYTSWIFYSPLALF 180
           FLGVDFGYYWFHRMAHEVNIMWAGHQTHHSSEDYNLSTALRQSVLQIYTSWIFYSPLALF
Sbjct: 121 FLGVDFGYYWFHRMAHEVNIMWAGHQTHHSSEDYNLSTALRQSVLQIYTSWIFYSPLALF 180

Query: 181 IPPSVYAVHLQFNLLYQFWIHTEVINNLGPLELILNTPSHHRVHHGRNRYCIDKNYAGVL 240
           IPPSVYAVHLQFNLLYQFWIHTEVINNLGPLELILNTPSHHRVHHGRNRYCIDKNYAGVL
Sbjct: 181 IPPSVYAVHLQFNLLYQFWIHTEVINNLGPLELILNTPSHHRVHHGRNRYCIDKNYAGVL 240

Query: 241 IIWDKIFGTFEAENEKVVYGLTHPINTFEPIKVQFHHLFSIWTTFWATPGFFNKFSVIFK 300
           IIWDKIFGTFEAENEKVVYGLTHPINTFEPIKVQFHHLFSIWTTFWATPGFFNKFSVIFK
Sbjct: 241 IIWDKIFGTFEAENEKVVYGLTHPINTFEPIKVQFHHLFSIWTTFWATPGFFNKFSVIFK 300

Query: 301 GPGWGPGKPRLGLSEEIPEVTGKEVPFSSSSSQLLKIYTVVQFALMLAFYEETFADTAAL 360
           GPGWGPGKPRLGLSEEIPEVTGKEVPFSSSSSQLLKIYTVVQFALMLAFYEETFADTAAL
Sbjct: 301 GPGWGPGKPRLGLSEEIPEVTGKEVPFSSSSSQLLKIYTVVQFALMLAFYEETFADTAAL 360

Query: 361 SQVTLLLRVCFIILTLTSIGFLLDQRPKAAIMETLRCLMFLMLYRFGHLKPLVPSLSSAF 420
           SQVTLLLRVCFIILTLTSIGFLLDQRPKAAIMETLRCLMFLMLYRFGHLKPLVPSLSSAF
Sbjct: 361 SQVTLLLRVCFIILTLTSIGFLLDQRPKAAIMETLRCLMFLMLYRFGHLKPLVPSLSSAF 420

Query: 421 EIVFSICIAFWGVRSMKQLTSHPWK 445
           EIVFSICIAFWGVRSMKQLTSHPWK
Sbjct: 421 EIVFSICIAFWGVRSMKQLTSHPWK 445


>gi|68160945 sterol-C5-desaturase [Homo sapiens]
          Length = 299

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 12/132 (9%)

Query: 125 DFGYYWFHRMAHEVNIMWAGHQTHHSSEDYNLSTALRQSVLQIYTSWIFYSPLAL--FIP 182
           D   YW HR  H   +    H+ HH    + + T            ++   P  +  FI 
Sbjct: 131 DMFIYWIHRGLHHRLVYKRLHKPHHI---WKIPTPFASHAFHPIDGFLQSLPYHIYPFIF 187

Query: 183 PSVYAVHLQFNLLYQFW---IHTEVINNLGPLELILNTPSHHRVHHGRNRYCIDKNYAGV 239
           P    V+L   +L   W   IH         L+  +N  +HH  HH       D NY   
Sbjct: 188 PLHKVVYLSLYILVNIWTISIHDGDFRVPQILQPFINGSAHHTDHH----MFFDYNYGQY 243

Query: 240 LIIWDKIFGTFE 251
             +WD+I G+F+
Sbjct: 244 FTLWDRIGGSFK 255


>gi|68160941 sterol-C5-desaturase [Homo sapiens]
          Length = 299

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 12/132 (9%)

Query: 125 DFGYYWFHRMAHEVNIMWAGHQTHHSSEDYNLSTALRQSVLQIYTSWIFYSPLAL--FIP 182
           D   YW HR  H   +    H+ HH    + + T            ++   P  +  FI 
Sbjct: 131 DMFIYWIHRGLHHRLVYKRLHKPHHI---WKIPTPFASHAFHPIDGFLQSLPYHIYPFIF 187

Query: 183 PSVYAVHLQFNLLYQFW---IHTEVINNLGPLELILNTPSHHRVHHGRNRYCIDKNYAGV 239
           P    V+L   +L   W   IH         L+  +N  +HH  HH       D NY   
Sbjct: 188 PLHKVVYLSLYILVNIWTISIHDGDFRVPQILQPFINGSAHHTDHH----MFFDYNYGQY 243

Query: 240 LIIWDKIFGTFE 251
             +WD+I G+F+
Sbjct: 244 FTLWDRIGGSFK 255


>gi|5803157 sterol-C4-methyl oxidase-like isoform 1 [Homo sapiens]
          Length = 293

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 42/166 (25%), Positives = 61/166 (36%), Gaps = 20/166 (12%)

Query: 107 FNLP--WDSPWTWYSAFLGV-------DFGYYWFHRMAHEVNIMWAGHQTHHSSE-DYNL 156
           FN+P  W+    WY             D  +Y+ HR+ H   I    H+ HH  +  + +
Sbjct: 123 FNIPYDWERMPRWYFLLARCFGCAVIEDTWHYFLHRLLHHKRIYKYIHKVHHEFQAPFGM 182

Query: 157 STALRQSVLQIYTSWIFYSPLALFIPPSVYA-VHLQFNLLYQFWIHTEVINNLGPLELI- 214
                  +  +     F+  + L     +     +   LL    +H+     L PL LI 
Sbjct: 183 EAEYAHPLETLILGTGFFIGIVLLCDHVILLWAWVTIRLLETIDVHSGYDIPLNPLNLIP 242

Query: 215 -LNTPSHHRVHHGRNRYCIDKNYAGVLIIWDKIFGT---FEAENEK 256
                 HH  HH         NYA     WD+IFGT   + A NEK
Sbjct: 243 FYAGSRHHDFHHMN----FIGNYASTFTWWDRIFGTDSQYNAYNEK 284


>gi|62865628 sterol-C4-methyl oxidase-like isoform 2 [Homo sapiens]
          Length = 162

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 11/139 (7%)

Query: 125 DFGYYWFHRMAHEVNIMWAGHQTHHSSE-DYNLSTALRQSVLQIYTSWIFYSPLALFIPP 183
           D  +Y+ HR+ H   I    H+ HH  +  + +       +  +     F+  + L    
Sbjct: 19  DTWHYFLHRLLHHKRIYKYIHKVHHEFQAPFGMEAEYAHPLETLILGTGFFIGIVLLCDH 78

Query: 184 SVYA-VHLQFNLLYQFWIHTEVINNLGPLELI--LNTPSHHRVHHGRNRYCIDKNYAGVL 240
            +     +   LL    +H+     L PL LI       HH  HH         NYA   
Sbjct: 79  VILLWAWVTIRLLETIDVHSGYDIPLNPLNLIPFYAGSRHHDFHHMN----FIGNYASTF 134

Query: 241 IIWDKIFGT---FEAENEK 256
             WD+IFGT   + A NEK
Sbjct: 135 TWWDRIFGTDSQYNAYNEK 153


>gi|146198575 hypothetical protein LOC10826 isoform 2 [Homo sapiens]
          Length = 333

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 16/126 (12%)

Query: 128 YYWFHRMAHEVNIMWAGHQTHHSSEDYNLSTALRQSVLQIYTSWIFY---SPLALFIPPS 184
           +Y+ HR+ H        H+ HH              V+ +Y   I +   + L + + P 
Sbjct: 186 FYYSHRLLHHPTFYKKIHKKHH-------EWTAPIGVISLYAHPIEHAVSNMLPVIVGPL 238

Query: 185 VYAVHL-QFNLLYQFWIHTEVINNLGPLELILNTPSHHRVHHGRNRYCIDKNYAGVLIIW 243
           V   HL    + +   +    I++ G     L +P  H  HH +   C      GVL + 
Sbjct: 239 VMGSHLSSITMWFSLALIITTISHCGYHLPFLPSPEFHDYHHLKFNQCY-----GVLGVL 293

Query: 244 DKIFGT 249
           D + GT
Sbjct: 294 DHLHGT 299


>gi|119964728 D-2-hydroxyglutarate dehydrogenase precursor [Homo
           sapiens]
          Length = 521

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 376 LTSIGFLLDQRPKAAIMETLRCLMFL-MLYRFGHLKPLVPSLSSAFEIVFSICIAFWG 432
           +T++  L   +P+A  +  L C  F  +L  F   K ++  + SAFE + ++C+   G
Sbjct: 265 ITTVSILCPPKPRAVNVAFLGCPGFAEVLQTFSTCKGMLGEILSAFEFMDAVCMQLVG 322


>gi|4505463 contactin associated protein 1 precursor [Homo sapiens]
          Length = 1384

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 10/51 (19%)

Query: 288  TPGFFNKFSVIFKGPGWG------PGKPRLGLSEEIPEVTGKEVPFSSSSS 332
            TPG+   +     GPG+       PG+P  G    +  VTG+EV FS S+S
Sbjct: 1045 TPGYVPGYH----GPGYRLPDYPRPGRPVPGYRGPVYNVTGEEVSFSFSTS 1091


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.139    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,201,690
Number of Sequences: 37866
Number of extensions: 760878
Number of successful extensions: 2093
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2088
Number of HSP's gapped (non-prelim): 8
length of query: 445
length of database: 18,247,518
effective HSP length: 105
effective length of query: 340
effective length of database: 14,271,588
effective search space: 4852339920
effective search space used: 4852339920
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.