Guide to the Human Genome
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Name: SC5DL Sequence: fasta or formatted (299aa) NCBI GI: 68160941
Description:

sterol-C5-desaturase

Referenced in:

Cholesterol Biosynthesis

Other entries for this name:
alt mRNA [299aa] sterol-C5-desaturase
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7         11           1
 C cysteine            0.7          2           1
 D aspartate           4.7         14           2
 E glutamate           3.7         11           1
 F phenylalanine      10.0         30           2
 G glycine             5.7         17           2
 H histidine           6.4         19           2
 I isoleucine          8.0         24           2
 K lysine              5.0         15           1
 L leucine            10.4         31           2
 M methionine          1.7          5           1
 N asparagine          3.0          9           1
 P proline             5.7         17           1
 Q glutamine           2.7          8           1
 R arginine            3.7         11           2
 S serine              6.0         18           2
 T threonine           4.7         14           1
 V valine              5.7         17           2
 W tryptophan          2.0          6           1
 Y tyrosine            6.7         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sterol-C5-desaturase 
SC5DL                 1.000   sterol-C5-desaturase 
SC4MOL                0.092   sterol-C4-methyl oxidase-like isoform 2 
SC4MOL                0.092   sterol-C4-methyl oxidase-like isoform 1 
C5orf4                0.062   hypothetical protein LOC10826 isoform 2 
CH25H                 0.043   cholesterol 25-hydroxylase 
TMEM195               0.031   transmembrane protein 195 
ZNF365                0.008   zinc finger protein 365 isoform C 
ALG3                  0.005   alpha-1,3-mannosyltransferase ALG3 isoform d 
ALG3                  0.005   alpha-1,3-mannosyltransferase ALG3 isoform a 
OR4X1                 0.005   olfactory receptor, family 4, subfamily X, member 1 ...
SLC36A3               0.005   solute carrier family 36, member 3 isoform 1 
SLC36A3               0.005   solute carrier family 36, member 3 isoform 2 
ATP8B3                0.005   ATPase, class I, type 8B, member 3 
MRGPRX1               0.005   MAS-related GPR, member X1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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