Guide to the Human Genome
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Name: NCLN Sequence: fasta or formatted (563aa) NCBI GI: 51873031
Description:

nicalin

Referenced in:

TGF-beta Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         61           2
 C cysteine            0.5          3           1
 D aspartate           5.0         28           1
 E glutamate           5.9         33           2
 F phenylalanine       4.3         24           2
 G glycine             4.8         27           3
 H histidine           3.0         17           2
 I isoleucine          2.8         16           2
 K lysine              3.7         21           1
 L leucine            12.6         71           3
 M methionine          3.0         17           1
 N asparagine          2.5         14           1
 P proline             3.9         22           2
 Q glutamine           5.7         32           2
 R arginine            6.2         35           2
 S serine              6.4         36           2
 T threonine           5.5         31           1
 V valine              9.1         51           2
 W tryptophan          0.9          5           1
 Y tyrosine            3.4         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nicalin 
TFR2                  0.015   transferrin receptor 2 
TFRC                  0.013   transferrin receptor 
TFRC                  0.013   transferrin receptor 
NAALAD2               0.007   N-acetylated alpha-linked acidic dipeptidase 2 
DDX20                 0.007   DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 
NEUROD1               0.007   neurogenic differentiation 1 
DNAH11                0.007   dynein, axonemal, heavy chain 11 
GPSM2                 0.005   LGN protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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