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Search of human proteins with 5174731
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5174731 translin-associated factor X [Homo sapiens]
(290 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5174731 translin-associated factor X [Homo sapiens] 577 e-165
gi|4759270 translin [Homo sapiens] 65 5e-11
gi|22726201 inositol polyphosphate multikinase [Homo sapiens] 32 0.65
gi|109255236 centrosomal protein 63 isoform d [Homo sapiens] 30 1.9
gi|109255226 centrosomal protein 63 isoform c [Homo sapiens] 30 1.9
gi|64085252 hypothetical protein LOC145508 [Homo sapiens] 30 2.5
gi|189181750 human immunodeficiency virus type I enhancer bindin... 30 3.2
gi|116089331 human immunodeficiency virus type I enhancer bindin... 30 3.2
gi|70166430 GRINL1A combined protein isoform 2 [Homo sapiens] 28 7.2
gi|70166414 GRINL1A combined protein isoform 1 [Homo sapiens] 28 7.2
gi|111494235 GRINL1A combined protein isoform 8 [Homo sapiens] 28 7.2
gi|70166580 GRINL1A upstream protein isoform 7 [Homo sapiens] 28 7.2
gi|27436951 lamin B2 [Homo sapiens] 28 9.4
gi|7710129 LIM domain only 6 [Homo sapiens] 28 9.4
>gi|5174731 translin-associated factor X [Homo sapiens]
Length = 290
Score = 577 bits (1488), Expect = e-165
Identities = 290/290 (100%), Positives = 290/290 (100%)
Query: 1 MSNKEGSGGFRKRKHDNFPHNQRREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLS 60
MSNKEGSGGFRKRKHDNFPHNQRREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLS
Sbjct: 1 MSNKEGSGGFRKRKHDNFPHNQRREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLS 60
Query: 61 RDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQVAQELSGEDMHQFHRAI 120
RDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQVAQELSGEDMHQFHRAI
Sbjct: 61 RDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQVAQELSGEDMHQFHRAI 120
Query: 121 TTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWRL 180
TTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWRL
Sbjct: 121 TTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWRL 180
Query: 181 RVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFIGNTGPYEVS 240
RVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFIGNTGPYEVS
Sbjct: 181 RVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFIGNTGPYEVS 240
Query: 241 KKLYTLKQSLAKVENACYALKVRGSEIPKHMLADVFSVKTEMIDQEEGIS 290
KKLYTLKQSLAKVENACYALKVRGSEIPKHMLADVFSVKTEMIDQEEGIS
Sbjct: 241 KKLYTLKQSLAKVENACYALKVRGSEIPKHMLADVFSVKTEMIDQEEGIS 290
>gi|4759270 translin [Homo sapiens]
Length = 228
Score = 65.5 bits (158), Expect = 5e-11
Identities = 57/229 (24%), Positives = 97/229 (42%), Gaps = 22/229 (9%)
Query: 39 FKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDI---LTESEIKLD 95
F Q L A D E + K+ + + ++ + LL + +DI ++
Sbjct: 7 FVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFG 66
Query: 96 GVRQKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFT 155
V+ + + + E ++FH LQ V +F +++T +L++ + +
Sbjct: 67 TVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAV------- 119
Query: 156 TEDNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPF 215
TE G E D++ G + DYL GV L EL R+ +NSV GD P
Sbjct: 120 TEILGIE--------PDREKG---FHLDVEDYLSGVLILASELSRLSVNSVTAGDYSRPL 168
Query: 216 EVSQFLRQVYDGFSFIGNTGPYEVSKKLYTLKQSLAKVENACYALKVRG 264
+S F+ ++ GF + N + K+ LK + KVE Y L +RG
Sbjct: 169 HISTFINELDSGFRLL-NLKNDSLRKRYDGLKYDVKKVEEVVYDLSIRG 216
>gi|22726201 inositol polyphosphate multikinase [Homo sapiens]
Length = 416
Score = 32.0 bits (71), Expect = 0.65
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 6/103 (5%)
Query: 173 KQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDID-TPFEVSQFLRQVYDGFSFI 231
K +G W P D L + D+T + + CI V G PF S+ ++Q + +
Sbjct: 112 KYYGIWSPPTAPNDLYLKLEDVTHKFNKPCIMDVKIGQKSYDPFASSEKIQQQVSKYPLM 171
Query: 232 GNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSEIPKHMLAD 274
G + ++Y + + EN Y G + K + D
Sbjct: 172 EEIGFLVLGMRVYHVHSDSYETENQHY-----GRSLTKETIKD 209
>gi|109255236 centrosomal protein 63 isoform d [Homo sapiens]
Length = 475
Score = 30.4 bits (67), Expect = 1.9
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 10/135 (7%)
Query: 22 QRREGKDVNSSSPVMLAFKSFQQELD---ARHDKYERLVKLSRDITVESKRTIFLLHRIT 78
Q+ E +++S S + ++ D A + ERL D+ V + T+ +
Sbjct: 193 QKLESVELSSQSEIQHLSSKLERANDTICANELEIERLTMRVNDL-VGTSMTV-----LQ 246
Query: 79 SAPDMEDILTESEIKLDGVRQKIFQVAQEL-SGEDMHQFHRAITTGLQEYVEAVSFQHFI 137
E+ L ESE L+ ++++ ++ L S E++ R LQE V+A + QH +
Sbjct: 247 EQQQKEEKLRESEKLLEALQEEKRELKAALQSQENLIHEARIQKEKLQEKVKATNTQHAV 306
Query: 138 KTRSLISMDEINKQL 152
+ SL S+ KQL
Sbjct: 307 EAISLESVSATCKQL 321
>gi|109255226 centrosomal protein 63 isoform c [Homo sapiens]
Length = 495
Score = 30.4 bits (67), Expect = 1.9
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 10/135 (7%)
Query: 22 QRREGKDVNSSSPVMLAFKSFQQELD---ARHDKYERLVKLSRDITVESKRTIFLLHRIT 78
Q+ E +++S S + ++ D A + ERL D+ V + T+ +
Sbjct: 193 QKLESVELSSQSEIQHLSSKLERANDTICANELEIERLTMRVNDL-VGTSMTV-----LQ 246
Query: 79 SAPDMEDILTESEIKLDGVRQKIFQVAQEL-SGEDMHQFHRAITTGLQEYVEAVSFQHFI 137
E+ L ESE L+ ++++ ++ L S E++ R LQE V+A + QH +
Sbjct: 247 EQQQKEEKLRESEKLLEALQEEKRELKAALQSQENLIHEARIQKEKLQEKVKATNTQHAV 306
Query: 138 KTRSLISMDEINKQL 152
+ SL S+ KQL
Sbjct: 307 EAISLESVSATCKQL 321
>gi|64085252 hypothetical protein LOC145508 [Homo sapiens]
Length = 1094
Score = 30.0 bits (66), Expect = 2.5
Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 20/130 (15%)
Query: 21 NQRREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSA 80
N R+E DV + + ++EL ++ +K + D+ +E K ++ +HR+
Sbjct: 541 NLRKELNDVLTKRALQ------EEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRL--- 591
Query: 81 PDMEDILTESEIKLDGVRQKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTR 140
ESE+K Q +V + E++ + + + Q+ + + Q IK
Sbjct: 592 --------ESELKKQSKIQSQMKVEKAHLEEEIAELKK---SQAQDKAKLLEMQESIKDL 640
Query: 141 SLISMDEINK 150
S I D NK
Sbjct: 641 SAIRADLANK 650
>gi|189181750 human immunodeficiency virus type I enhancer binding
protein 3 b [Homo sapiens]
Length = 2405
Score = 29.6 bits (65), Expect = 3.2
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 119 AITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGK-ENKTPSSDAQDKQFGT 177
A ++G + +V S +S+ ++ F +D+GK E +PSSD + K GT
Sbjct: 914 AQSSGESSFESSVPLSRSPSQESNVSLSGSSRSASFERDDHGKAEAPSPSSDMRPKPLGT 973
Query: 178 WRLRV 182
L V
Sbjct: 974 HMLTV 978
>gi|116089331 human immunodeficiency virus type I enhancer binding
protein 3 [Homo sapiens]
Length = 2406
Score = 29.6 bits (65), Expect = 3.2
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 119 AITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGK-ENKTPSSDAQDKQFGT 177
A ++G + +V S +S+ ++ F +D+GK E +PSSD + K GT
Sbjct: 914 AQSSGESSFESSVPLSRSPSQESNVSLSGSSRSASFERDDHGKAEAPSPSSDMRPKPLGT 973
Query: 178 WRLRV 182
L V
Sbjct: 974 HMLTV 978
>gi|70166430 GRINL1A combined protein isoform 2 [Homo sapiens]
Length = 445
Score = 28.5 bits (62), Expect = 7.2
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 20/140 (14%)
Query: 95 DGVRQKIFQVAQELSGEDMHQFHRAITTGLQEYVE------AVSFQHFIKTRSLISMDEI 148
D +RQKI Q+ QELS ++ QEY+E + + F S ++ D I
Sbjct: 123 DEMRQKIRQLTQELS----------VSHAQQEYLENHIQTQSSALDRFNAMNSALASDSI 172
Query: 149 --NKQLIFTTEDNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMCINSV 206
K L+ T +N + Q + +LR L VA + +L++M + S
Sbjct: 173 GLQKTLVDVTLENSNIKDQIRNLQQTYEASMDKLR--EKQRQLEVAQVENQLLKMKVESS 230
Query: 207 GNGDIDTPFEVSQFLRQVYD 226
+ + E+++ L Y+
Sbjct: 231 QEANAEVMREMTKKLYSQYE 250
>gi|70166414 GRINL1A combined protein isoform 1 [Homo sapiens]
Length = 550
Score = 28.5 bits (62), Expect = 7.2
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 20/140 (14%)
Query: 95 DGVRQKIFQVAQELSGEDMHQFHRAITTGLQEYVE------AVSFQHFIKTRSLISMDEI 148
D +RQKI Q+ QELS ++ QEY+E + + F S ++ D I
Sbjct: 123 DEMRQKIRQLTQELS----------VSHAQQEYLENHIQTQSSALDRFNAMNSALASDSI 172
Query: 149 --NKQLIFTTEDNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMCINSV 206
K L+ T +N + Q + +LR L VA + +L++M + S
Sbjct: 173 GLQKTLVDVTLENSNIKDQIRNLQQTYEASMDKLR--EKQRQLEVAQVENQLLKMKVESS 230
Query: 207 GNGDIDTPFEVSQFLRQVYD 226
+ + E+++ L Y+
Sbjct: 231 QEANAEVMREMTKKLYSQYE 250
>gi|111494235 GRINL1A combined protein isoform 8 [Homo sapiens]
Length = 438
Score = 28.5 bits (62), Expect = 7.2
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 20/140 (14%)
Query: 95 DGVRQKIFQVAQELSGEDMHQFHRAITTGLQEYVE------AVSFQHFIKTRSLISMDEI 148
D +RQKI Q+ QELS ++ QEY+E + + F S ++ D I
Sbjct: 123 DEMRQKIRQLTQELS----------VSHAQQEYLENHIQTQSSALDRFNAMNSALASDSI 172
Query: 149 --NKQLIFTTEDNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMCINSV 206
K L+ T +N + Q + +LR L VA + +L++M + S
Sbjct: 173 GLQKTLVDVTLENSNIKDQIRNLQQTYEASMDKLR--EKQRQLEVAQVENQLLKMKVESS 230
Query: 207 GNGDIDTPFEVSQFLRQVYD 226
+ + E+++ L Y+
Sbjct: 231 QEANAEVMREMTKKLYSQYE 250
>gi|70166580 GRINL1A upstream protein isoform 7 [Homo sapiens]
Length = 466
Score = 28.5 bits (62), Expect = 7.2
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 20/140 (14%)
Query: 95 DGVRQKIFQVAQELSGEDMHQFHRAITTGLQEYVE------AVSFQHFIKTRSLISMDEI 148
D +RQKI Q+ QELS ++ QEY+E + + F S ++ D I
Sbjct: 123 DEMRQKIRQLTQELS----------VSHAQQEYLENHIQTQSSALDRFNAMNSALASDSI 172
Query: 149 --NKQLIFTTEDNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMCINSV 206
K L+ T +N + Q + +LR L VA + +L++M + S
Sbjct: 173 GLQKTLVDVTLENSNIKDQIRNLQQTYEASMDKLR--EKQRQLEVAQVENQLLKMKVESS 230
Query: 207 GNGDIDTPFEVSQFLRQVYD 226
+ + E+++ L Y+
Sbjct: 231 QEANAEVMREMTKKLYSQYE 250
>gi|27436951 lamin B2 [Homo sapiens]
Length = 600
Score = 28.1 bits (61), Expect = 9.4
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 10 FRKRKHDNFPHNQRREGK----DVNSSSPVMLAFKSFQ--QELDARHDKYERLVKLSRDI 63
FRK + RR + +V+SS FK Q +EL ++HD+ RL KL +
Sbjct: 201 FRKSVFEEEVRETRRRHERRLVEVDSSRQQEYDFKMAQALEELRSQHDEQVRLYKLELEQ 260
Query: 64 TVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQVAQELSG 110
T ++K L S+ + + + +L R ++ ++ +LSG
Sbjct: 261 TYQAKLDSAKL----SSDQNDKAASAAREELKEARMRLESLSYQLSG 303
>gi|7710129 LIM domain only 6 [Homo sapiens]
Length = 615
Score = 28.1 bits (61), Expect = 9.4
Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 9/106 (8%)
Query: 108 LSGEDMHQFHRAITTGLQEYVEAVSFQHFIKT--RSLISMDEINKQLIFTTEDNGKENKT 165
L E ++QF + YV + ++ IK L D + E+ KE +
Sbjct: 100 LKPEQVYQFFSCLPEDKVPYVNSPGEKYRIKQLLHQLPPHDSEAQYCTALEEEEKKELRA 159
Query: 166 PSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDI 211
S + + G +R+ PV +TG + C +G GDI
Sbjct: 160 FSQQRKRENLGRGIVRIFPVT-------ITGAICEECGKQIGGGDI 198
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,836,197
Number of Sequences: 37866
Number of extensions: 388583
Number of successful extensions: 1013
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1007
Number of HSP's gapped (non-prelim): 17
length of query: 290
length of database: 18,247,518
effective HSP length: 101
effective length of query: 189
effective length of database: 14,423,052
effective search space: 2725956828
effective search space used: 2725956828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.