Guide to the Human Genome
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Name: TSNAX Sequence: fasta or formatted (290aa) NCBI GI: 5174731
Description:

translin-associated factor X

Referenced in:

DNases, Recombination, and DNA Repair

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         12           1
 C cysteine            0.7          2           1
 D aspartate           6.9         20           1
 E glutamate           7.9         23           2
 F phenylalanine       5.5         16           1
 G glycine             6.2         18           2
 H histidine           2.8          8           1
 I isoleucine          5.9         17           1
 K lysine              7.6         22           2
 L leucine             7.9         23           2
 M methionine          3.1          9           1
 N asparagine          3.8         11           1
 P proline             2.8          8           1
 Q glutamine           5.5         16           2
 R arginine            5.9         17           2
 S serine              8.3         24           3
 T threonine           5.9         17           2
 V valine              6.6         19           1
 W tryptophan          0.3          1           1
 Y tyrosine            2.4          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   translin-associated factor X 
TSN                   0.072   translin 
IPMK                  0.013   inositol polyphosphate multikinase 
CEP63                 0.009   centrosomal protein 63 isoform d 
CEP63                 0.009   centrosomal protein 63 isoform c 
C14orf145             0.009   hypothetical protein LOC145508 
HIVEP3                0.009   human immunodeficiency virus type I enhancer bindin...
HIVEP3                0.009   human immunodeficiency virus type I enhancer bindin...
GCOM1                 0.005   GRINL1A combined protein isoform 2 
GCOM1                 0.005   GRINL1A combined protein isoform 1 
GCOM1                 0.005   GRINL1A combined protein isoform 8 
GCOM1                 0.005   GRINL1A upstream protein isoform 7 
LMNB2                 0.005   lamin B2 
PRICKLE3              0.005   LIM domain only 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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