Guide to the Human Genome
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Name: TSN Sequence: fasta or formatted (228aa) NCBI GI: 4759270
Description:

translin

Referenced in:

DNases, Recombination, and DNA Repair

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         14           3
 C cysteine            0.9          2           1
 D aspartate           4.8         11           1
 E glutamate          10.1         23           2
 F phenylalanine       5.7         13           1
 G glycine             5.3         12           1
 H histidine           3.1          7           1
 I isoleucine          4.8         11           1
 K lysine              6.1         14           2
 L leucine            12.7         29           2
 M methionine          0.4          1           1
 N asparagine          2.2          5           1
 P proline             1.8          4           1
 Q glutamine           3.9          9           1
 R arginine            7.0         16           1
 S serine              6.1         14           1
 T threonine           5.7         13           1
 V valine              9.2         21           2
 W tryptophan          0.4          1           1
 Y tyrosine            3.5          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   translin 
TSNAX                 0.095   translin-associated factor X 
MYH7B                 0.012   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
TRIM56                0.009   tripartite motif-containing 56 
RNF8                  0.007   ring finger protein 8 isoform 2 
RNF8                  0.007   ring finger protein 8 isoform 1 
CCDC9                 0.007   coiled-coil domain containing 9 
C20orf96              0.007   hypothetical protein LOC140680 
KIF3B                 0.007   kinesin family member 3B 
ANXA6                 0.007   annexin VI isoform 2 
PCNT                  0.007   pericentrin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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