Search of human proteins with 13376253

Search of human proteins with 13376253

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13376253 ribonuclease P 21 [Homo sapiens]
         (154 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13376253 ribonuclease P 21 [Homo sapiens]                          322   6e-89
gi|27886568 interferon induced with helicase C domain 1 [Homo sa...    33   0.13 
gi|239758051 PREDICTED: hypothetical protein [Homo sapiens]            30   1.1  
gi|209571519 cysteine rich BMP regulator 2 isoform 1 [Homo sapiens]    29   1.8  
gi|38327535 insulin-like 3 precursor [Homo sapiens]                    28   3.1  
gi|4757710 amiloride-sensitive cation channel 3 isoform a [Homo ...    28   4.1  
gi|9998946 amiloride-sensitive cation channel 3 isoform b [Homo ...    28   4.1  
gi|9998948 amiloride-sensitive cation channel 3 isoform c [Homo ...    28   4.1  
gi|239745658 PREDICTED: hypothetical protein XP_002344164 [Homo ...    27   5.3  
gi|126723547 hypothetical protein LOC57523 [Homo sapiens]              27   5.3  
gi|169211171 PREDICTED: hypothetical protein [Homo sapiens]            27   6.9  
gi|40317626 thrombospondin 1 precursor [Homo sapiens]                  27   9.1  

>gi|13376253 ribonuclease P 21 [Homo sapiens]
          Length = 154

 Score =  322 bits (826), Expect = 6e-89
 Identities = 154/154 (100%), Positives = 154/154 (100%)

Query: 1   MAGPVKDREAFQRLNFLYQAAHCVLAQDPENQALARFYCYTERTIAKRLVLRRDPSVKRT 60
           MAGPVKDREAFQRLNFLYQAAHCVLAQDPENQALARFYCYTERTIAKRLVLRRDPSVKRT
Sbjct: 1   MAGPVKDREAFQRLNFLYQAAHCVLAQDPENQALARFYCYTERTIAKRLVLRRDPSVKRT 60

Query: 61  LCRGCSSLLVPGLTCTQRQRRCRGQRWTVQTCLTCQRSQRFLNDPGHLLWGDRPEAQLGS 120
           LCRGCSSLLVPGLTCTQRQRRCRGQRWTVQTCLTCQRSQRFLNDPGHLLWGDRPEAQLGS
Sbjct: 61  LCRGCSSLLVPGLTCTQRQRRCRGQRWTVQTCLTCQRSQRFLNDPGHLLWGDRPEAQLGS 120

Query: 121 QADSKPLQPLPNTAHSISDRLPEEKMQTQGSSNQ 154
           QADSKPLQPLPNTAHSISDRLPEEKMQTQGSSNQ
Sbjct: 121 QADSKPLQPLPNTAHSISDRLPEEKMQTQGSSNQ 154


>gi|27886568 interferon induced with helicase C domain 1 [Homo
           sapiens]
          Length = 1025

 Score = 32.7 bits (73), Expect = 0.13
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 12/70 (17%)

Query: 13  RLNFLYQAAHCVLAQDPEN----------QALARFYCYTERTIAKRLVLRRDPSVKRTLC 62
           R   +Y+A HCV    PE           Q++      T+R IAK    + +PS+   LC
Sbjct: 850 REKMMYKAIHCVQNMKPEEYAHKILELQMQSIMEKKMKTKRNIAKH--YKNNPSLITFLC 907

Query: 63  RGCSSLLVPG 72
           + CS L   G
Sbjct: 908 KNCSVLACSG 917


>gi|239758051 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 243

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 15/31 (48%), Positives = 17/31 (54%)

Query: 57  VKRTLCRGCSSLLVPGLTCTQRQRRCRGQRW 87
           +KR LC G SSL  P L   QR+     QRW
Sbjct: 103 LKRNLCPGGSSLGAPPLRTPQRRVTLAAQRW 133


>gi|209571519 cysteine rich BMP regulator 2 isoform 1 [Homo sapiens]
          Length = 1503

 Score = 28.9 bits (63), Expect = 1.8
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 65   CSSLLVPGLTCTQRQRR-CRGQRWTVQTCLTC 95
            C     P  +C  + R    G+RWTV TC +C
Sbjct: 1076 CPVCRAPTQSCVHQGREVASGERWTVDTCTSC 1107


>gi|38327535 insulin-like 3 precursor [Homo sapiens]
          Length = 131

 Score = 28.1 bits (61), Expect = 3.1
 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 10/61 (16%)

Query: 80  RRCRGQRWTVQTCLTCQRSQRFLNDPGHLLWGDRPEAQLGSQADSK-----PLQPLPNTA 134
           R C G RW+ +         R L     L W +R     G  ADS       LQPLP T+
Sbjct: 44  RVCGGPRWSTEARRPATGGDREL-----LQWLERRHLLHGLVADSNLTLGPGLQPLPQTS 98

Query: 135 H 135
           H
Sbjct: 99  H 99


>gi|4757710 amiloride-sensitive cation channel 3 isoform a [Homo
           sapiens]
          Length = 531

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 90  QTCLTCQRSQ-RFLNDPGHLLWGDRPEAQLGSQADSKPLQPLPNTAHSIS 138
           QT ++CQ+ Q  FL  P    WGD   A L    + +P  PL + + S S
Sbjct: 262 QTFVSCQQQQLSFLPPP----WGDCSSASLNPNYEPEPSDPLGSPSPSPS 307


>gi|9998946 amiloride-sensitive cation channel 3 isoform b [Homo
           sapiens]
          Length = 549

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 90  QTCLTCQRSQ-RFLNDPGHLLWGDRPEAQLGSQADSKPLQPLPNTAHSIS 138
           QT ++CQ+ Q  FL  P    WGD   A L    + +P  PL + + S S
Sbjct: 262 QTFVSCQQQQLSFLPPP----WGDCSSASLNPNYEPEPSDPLGSPSPSPS 307


>gi|9998948 amiloride-sensitive cation channel 3 isoform c [Homo
           sapiens]
          Length = 543

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 90  QTCLTCQRSQ-RFLNDPGHLLWGDRPEAQLGSQADSKPLQPLPNTAHSIS 138
           QT ++CQ+ Q  FL  P    WGD   A L    + +P  PL + + S S
Sbjct: 262 QTFVSCQQQQLSFLPPP----WGDCSSASLNPNYEPEPSDPLGSPSPSPS 307


>gi|239745658 PREDICTED: hypothetical protein XP_002344164 [Homo
           sapiens]
          Length = 149

 Score = 27.3 bits (59), Expect = 5.3
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 24/85 (28%)

Query: 79  QRRCRGQRWTVQTCLTCQRSQRFLNDPGHLLWGDRPEAQLG--------SQADSKPLQPL 130
           +R   G+ WT      C+  ++    PG L WGDR EA+          ++A++ P+Q  
Sbjct: 11  KRPLAGRSWT------CRSGRK----PGALDWGDRSEARASWAWRVRCEAEAEAGPVQAF 60

Query: 131 ------PNTAHSISDRLPEEKMQTQ 149
                 P  A   S   PEE  ++Q
Sbjct: 61  ERQEAGPAKAAWRSSSAPEEAAKSQ 85


>gi|126723547 hypothetical protein LOC57523 [Homo sapiens]
          Length = 1898

 Score = 27.3 bits (59), Expect = 5.3
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 10/66 (15%)

Query: 96   QRSQRFLNDPGHLL--WGDRPEA-----QLGSQADSKPLQPLPN---TAHSISDRLPEEK 145
            ++  R   D G+ L  W   P +     +L   ADS PL+ LPN         +R  EE+
Sbjct: 945  KKPNRLDTDIGNFLKVWKTLPPSSASVTELSDDADSGPLESLPNMEEVREEKEERQDEEQ 1004

Query: 146  MQTQGS 151
             Q QG+
Sbjct: 1005 RQGQGT 1010


>gi|169211171 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 173

 Score = 26.9 bits (58), Expect = 6.9
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 97  RSQRFLNDPGHLLWGDRPEAQLGSQADSKPLQPLPNTAHSIS 138
           ++ R L   GH  WGD PE + G      P +  P T+  +S
Sbjct: 2   QADRSLRSRGHDFWGDSPEHRPGRPEAGMPCR-FPRTSPVVS 42


>gi|40317626 thrombospondin 1 precursor [Homo sapiens]
          Length = 1170

 Score = 26.6 bits (57), Expect = 9.1
 Identities = 12/39 (30%), Positives = 16/39 (41%)

Query: 72  GLTCTQRQRRCRGQRWTVQTCLTCQRSQRFLNDPGHLLW 110
           G +C     RC G     +TC   +  +RF  D G   W
Sbjct: 403 GRSCDSLNNRCEGSSVQTRTCHIQECDKRFKQDGGWSHW 441


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.133    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,655,062
Number of Sequences: 37866
Number of extensions: 293184
Number of successful extensions: 741
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 736
Number of HSP's gapped (non-prelim): 13
length of query: 154
length of database: 18,247,518
effective HSP length: 93
effective length of query: 61
effective length of database: 14,725,980
effective search space: 898284780
effective search space used: 898284780
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.