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Search of human proteins with 5174419
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5174419 caseinolytic peptidase, ATP-dependent, proteolytic
subunit precursor [Homo sapiens]
(277 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5174419 caseinolytic peptidase, ATP-dependent, proteolytic su... 555 e-158
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 35 0.072
gi|169160869 PREDICTED: hypothetical protein [Homo sapiens] 31 1.0
gi|88950401 PREDICTED: hypothetical protein [Homo sapiens] 31 1.0
gi|88942880 PREDICTED: hypothetical protein [Homo sapiens] 31 1.0
gi|156142192 hypothetical protein LOC51306 isoform 3 [Homo sapiens] 30 2.3
gi|156142190 hypothetical protein LOC51306 isoform 2 [Homo sapiens] 30 2.3
gi|156142188 hypothetical protein LOC51306 isoform 1 [Homo sapiens] 30 2.3
gi|120587023 down-regulated in metastasis [Homo sapiens] 30 3.0
gi|89036565 PREDICTED: similar to Temporarily Assigned Gene name... 30 3.0
gi|157388904 HEAT repeat containing 2 [Homo sapiens] 29 5.2
gi|13435377 glucocorticoid modulatory element binding protein 1 ... 28 6.7
gi|13435375 glucocorticoid modulatory element binding protein 1 ... 28 6.7
gi|226958575 RAS protein activator like 2 isoform 2 [Homo sapiens] 28 8.8
gi|4758808 RAS protein activator like 2 isoform 1 [Homo sapiens] 28 8.8
gi|78190495 Kv channel interacting protein 3 isoform 2 [Homo sap... 28 8.8
gi|7305199 Kv channel interacting protein 3 isoform 1 [Homo sapi... 28 8.8
>gi|5174419 caseinolytic peptidase, ATP-dependent, proteolytic
subunit precursor [Homo sapiens]
Length = 277
Score = 555 bits (1429), Expect = e-158
Identities = 277/277 (100%), Positives = 277/277 (100%)
Query: 1 MWPGILVGGARVASCRYPALGPRLAAHFPAQRPPQRTLQNGLALQRCLHATATRALPLIP 60
MWPGILVGGARVASCRYPALGPRLAAHFPAQRPPQRTLQNGLALQRCLHATATRALPLIP
Sbjct: 1 MWPGILVGGARVASCRYPALGPRLAAHFPAQRPPQRTLQNGLALQRCLHATATRALPLIP 60
Query: 61 IVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYIN 120
IVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYIN
Sbjct: 61 IVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYIN 120
Query: 121 SPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQP 180
SPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQP
Sbjct: 121 SPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQP 180
Query: 181 SGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGI 240
SGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGI
Sbjct: 181 SGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGI 240
Query: 241 LDKVLVHPPQDGEDEPTLVQKEPVEAAPAAEPVPAST 277
LDKVLVHPPQDGEDEPTLVQKEPVEAAPAAEPVPAST
Sbjct: 241 LDKVLVHPPQDGEDEPTLVQKEPVEAAPAAEPVPAST 277
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 35.0 bits (79), Expect = 0.072
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 174 RIMIHQPSGGARGQATDIAIQAEEIMK-LKKQLYNIYAKHTKQSLQVIESAMERDRYMSP 232
R + +P+ G AT ++ +++++ L KQ+ + K+ L+ E A+ + R
Sbjct: 1454 RNSVERPAEPVAGAATPSLVEQQKMLEELNKQI-----EEQKRQLEEQEEALRQQRAAVG 1508
Query: 233 MEAQEFGILDKVLVHPPQDGEDEPTLVQKEPVEAAPAAEPVPAS 276
+ F + D ++ PP+ + L Q+E A A PAS
Sbjct: 1509 VSMAHFSVSDALMSPPPKSSLPKAELFQQEQQSADKPASLPPAS 1552
>gi|169160869 PREDICTED: hypothetical protein [Homo sapiens]
Length = 120
Score = 31.2 bits (69), Expect = 1.0
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 234 EAQEFGILDKVLVHPPQDGED----EPTLVQKEPVEAAPAAEPVPA 275
E + F +++ PP GE EP L ++P++A+P A+PVPA
Sbjct: 32 EQRSFPLVEAQAQAPPH-GEARPLAEPALSLRQPIDASPRADPVPA 76
>gi|88950401 PREDICTED: hypothetical protein [Homo sapiens]
Length = 120
Score = 31.2 bits (69), Expect = 1.0
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 234 EAQEFGILDKVLVHPPQDGED----EPTLVQKEPVEAAPAAEPVPA 275
E + F +++ PP GE EP L ++P++A+P A+PVPA
Sbjct: 32 EQRSFPLVEAQAQAPPH-GEARPLAEPALSLRQPIDASPRADPVPA 76
>gi|88942880 PREDICTED: hypothetical protein [Homo sapiens]
Length = 120
Score = 31.2 bits (69), Expect = 1.0
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 234 EAQEFGILDKVLVHPPQDGED----EPTLVQKEPVEAAPAAEPVPA 275
E + F +++ PP GE EP L ++P++A+P A+PVPA
Sbjct: 32 EQRSFPLVEAQAQAPPH-GEARRLAEPALSLRQPIDASPRADPVPA 76
>gi|156142192 hypothetical protein LOC51306 isoform 3 [Homo sapiens]
Length = 791
Score = 30.0 bits (66), Expect = 2.3
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 197 EIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHPPQDGEDEP 256
E+ KL+KQ+ + AKH + + R + + FG L H ++ EDEP
Sbjct: 516 ELTKLRKQIKD--AKHKNSDGEFVPQTRPRSNTLP----KSFG---SSLDHEDEENEDEP 566
Query: 257 TLVQKE 262
++QKE
Sbjct: 567 KVIQKE 572
>gi|156142190 hypothetical protein LOC51306 isoform 2 [Homo sapiens]
Length = 887
Score = 30.0 bits (66), Expect = 2.3
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 197 EIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHPPQDGEDEP 256
E+ KL+KQ+ + AKH + + R + + FG L H ++ EDEP
Sbjct: 612 ELTKLRKQIKD--AKHKNSDGEFVPQTRPRSNTLP----KSFG---SSLDHEDEENEDEP 662
Query: 257 TLVQKE 262
++QKE
Sbjct: 663 KVIQKE 668
>gi|156142188 hypothetical protein LOC51306 isoform 1 [Homo sapiens]
Length = 915
Score = 30.0 bits (66), Expect = 2.3
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 197 EIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHPPQDGEDEP 256
E+ KL+KQ+ + AKH + + R + + FG L H ++ EDEP
Sbjct: 612 ELTKLRKQIKD--AKHKNSDGEFVPQTRPRSNTLP----KSFG---SSLDHEDEENEDEP 662
Query: 257 TLVQKE 262
++QKE
Sbjct: 663 KVIQKE 668
>gi|120587023 down-regulated in metastasis [Homo sapiens]
Length = 2785
Score = 29.6 bits (65), Expect = 3.0
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 182 GGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGIL 241
G ARGQ + + + + + + Y + T++ LQV+ + E D Y + +A FG+L
Sbjct: 2170 GAARGQNFHLVVNCFKCVTILVKKVKSY-QITEKQLQVLLAYAEEDIYDTSRQATAFGLL 2228
Query: 242 DKVL 245
+L
Sbjct: 2229 KAIL 2232
>gi|89036565 PREDICTED: similar to Temporarily Assigned Gene name
family member (tag-184) [Homo sapiens]
Length = 2785
Score = 29.6 bits (65), Expect = 3.0
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 182 GGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGIL 241
G ARGQ + + + + + + Y + T++ LQV+ + E D Y + +A FG+L
Sbjct: 2170 GAARGQNFHLVVNCFKCVTILVKKVKSY-QITEKQLQVLLAYAEEDIYDTSRQATAFGLL 2228
Query: 242 DKVL 245
+L
Sbjct: 2229 KAIL 2232
>gi|157388904 HEAT repeat containing 2 [Homo sapiens]
Length = 855
Score = 28.9 bits (63), Expect = 5.2
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 18 PALGPRLAAHFPAQRPPQRTLQNGLALQRCL 48
PAL RLA PA+RPP+ + LAL + L
Sbjct: 119 PALAARLAGPVPARRPPEACEELRLALVQLL 149
>gi|13435377 glucocorticoid modulatory element binding protein 1
isoform 1 [Homo sapiens]
Length = 573
Score = 28.5 bits (62), Expect = 6.7
Identities = 39/185 (21%), Positives = 73/185 (39%), Gaps = 26/185 (14%)
Query: 92 DDSVASLVIAQLLFLQSESNKKPIHMYINSPGG--VVTAGLAIYDTMQYILNPICTWCVG 149
D + S + ++ + + K P + P V++ + +++PI VG
Sbjct: 355 DHRLKSQTVQNVVLMPVSTPKPPKRPRLQRPASTTVLSPSPPVQQPQFTVISPITITPVG 414
Query: 150 QAASMGSLLLAAGTPGMRHSLPNSRIMIHQ-PSGGARGQATDIAIQAEEIMKLKKQLYNI 208
Q+ SMG++ +A + G +S + +H PSG + A + K +
Sbjct: 415 QSFSMGNIPVATLSQG------SSPVTVHTLPSG------PQLFRYATVVSSAKSSSPDT 462
Query: 209 YAKHTKQSLQVIESAMERD--------RYMSPME--AQEFGILDKVLVHPPQDGEDEPTL 258
H SL ++ S +D +SP+E A E G L + ED T+
Sbjct: 463 VTIHPSSSLALLSSTAMQDGSTLGNMTTMVSPVELVAMESG-LTSAIQAVESTSEDGQTI 521
Query: 259 VQKEP 263
++ +P
Sbjct: 522 IEIDP 526
>gi|13435375 glucocorticoid modulatory element binding protein 1
isoform 2 [Homo sapiens]
Length = 563
Score = 28.5 bits (62), Expect = 6.7
Identities = 39/185 (21%), Positives = 73/185 (39%), Gaps = 26/185 (14%)
Query: 92 DDSVASLVIAQLLFLQSESNKKPIHMYINSPGG--VVTAGLAIYDTMQYILNPICTWCVG 149
D + S + ++ + + K P + P V++ + +++PI VG
Sbjct: 345 DHRLKSQTVQNVVLMPVSTPKPPKRPRLQRPASTTVLSPSPPVQQPQFTVISPITITPVG 404
Query: 150 QAASMGSLLLAAGTPGMRHSLPNSRIMIHQ-PSGGARGQATDIAIQAEEIMKLKKQLYNI 208
Q+ SMG++ +A + G +S + +H PSG + A + K +
Sbjct: 405 QSFSMGNIPVATLSQG------SSPVTVHTLPSG------PQLFRYATVVSSAKSSSPDT 452
Query: 209 YAKHTKQSLQVIESAMERD--------RYMSPME--AQEFGILDKVLVHPPQDGEDEPTL 258
H SL ++ S +D +SP+E A E G L + ED T+
Sbjct: 453 VTIHPSSSLALLSSTAMQDGSTLGNMTTMVSPVELVAMESG-LTSAIQAVESTSEDGQTI 511
Query: 259 VQKEP 263
++ +P
Sbjct: 512 IEIDP 516
>gi|226958575 RAS protein activator like 2 isoform 2 [Homo sapiens]
Length = 1280
Score = 28.1 bits (61), Expect = 8.8
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 112 KKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLP 171
++P+H +N PGG+ L+ + + ++ NPI AS+ S L T R
Sbjct: 904 RRPLHPALNQPGGL--QPLSFQNPVYHLNNPIPAM---PKASIDSSLENLSTASSRSQSN 958
Query: 172 NSRIMIHQPSGGARGQATDIAIQAEEIMK 200
+ + PS + T + Q+E+ +
Sbjct: 959 SEDFKLSGPSNSSMEDFTKRSTQSEDFSR 987
>gi|4758808 RAS protein activator like 2 isoform 1 [Homo sapiens]
Length = 1139
Score = 28.1 bits (61), Expect = 8.8
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 112 KKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLP 171
++P+H +N PGG+ L+ + + ++ NPI AS+ S L T R
Sbjct: 763 RRPLHPALNQPGGL--QPLSFQNPVYHLNNPIPAM---PKASIDSSLENLSTASSRSQSN 817
Query: 172 NSRIMIHQPSGGARGQATDIAIQAEEIMK 200
+ + PS + T + Q+E+ +
Sbjct: 818 SEDFKLSGPSNSSMEDFTKRSTQSEDFSR 846
>gi|78190495 Kv channel interacting protein 3 isoform 2 [Homo
sapiens]
Length = 230
Score = 28.1 bits (61), Expect = 8.8
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 193 IQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGIL 241
I EE++ + K +Y++ +HT L+ A +R+ M+ + G++
Sbjct: 156 ITKEEMLAIMKSIYDMMGRHTYPILREDAPAEHVERFFEKMDRNQDGVV 204
>gi|7305199 Kv channel interacting protein 3 isoform 1 [Homo
sapiens]
Length = 256
Score = 28.1 bits (61), Expect = 8.8
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 193 IQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGIL 241
I EE++ + K +Y++ +HT L+ A +R+ M+ + G++
Sbjct: 182 ITKEEMLAIMKSIYDMMGRHTYPILREDAPAEHVERFFEKMDRNQDGVV 230
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,195,912
Number of Sequences: 37866
Number of extensions: 493214
Number of successful extensions: 1513
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1499
Number of HSP's gapped (non-prelim): 23
length of query: 277
length of database: 18,247,518
effective HSP length: 101
effective length of query: 176
effective length of database: 14,423,052
effective search space: 2538457152
effective search space used: 2538457152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.