Guide to the Human Genome
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Search of human proteins with 51317376

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|51317376 NHP2 non-histone chromosome protein 2-like 1 [Homo
sapiens]
         (128 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|51317376 NHP2 non-histone chromosome protein 2-like 1 [Homo s...   251   8e-68
gi|4826860 NHP2 non-histone chromosome protein 2-like 1 [Homo sa...   251   8e-68
gi|8923444 nucleolar protein family A, member 2 isoform a [Homo ...    96   8e-21
gi|4506661 ribosomal protein L7a [Homo sapiens]                        50   4e-07
gi|77812674 nucleolar protein family A, member 2 isoform b [Homo...    41   2e-04
gi|83779010 SECIS binding protein 2 [Homo sapiens]                     32   0.14 
gi|148222745 ribonuclease P/MRP 38 subunit [Homo sapiens]              30   0.51 
gi|33859837 ribonuclease P/MRP 38 subunit [Homo sapiens]               30   0.51 
gi|148238078 ribonuclease P/MRP 38 subunit [Homo sapiens]              30   0.51 
gi|60685227 SECIS binding protein 2-like [Homo sapiens]                30   0.67 
gi|157502193 proteasome 26S non-ATPase subunit 13 isoform 1 [Hom...    28   1.5  
gi|30025026 osteopetrosis associated transmembrane protein 1 [Ho...    27   5.7  
gi|239758001 PREDICTED: similar to facioscapulohumeral muscular ...    27   5.7  
gi|61835172 fragile X mental retardation-related protein 1 isofo...    27   5.7  
gi|61835164 fragile X mental retardation-related protein 1 isofo...    27   5.7  
gi|61835148 fragile X mental retardation-related protein 1 isofo...    27   5.7  
gi|62526031 neurochondrin isoform 2 [Homo sapiens]                     26   7.4  
gi|24307949 neurochondrin isoform 1 [Homo sapiens]                     26   7.4  
gi|62526029 neurochondrin isoform 1 [Homo sapiens]                     26   7.4  
gi|239758067 PREDICTED: similar to facioscapulohumeral muscular ...    26   9.7  
gi|239752536 PREDICTED: hypothetical protein XP_002346688 [Homo ...    26   9.7  

>gi|51317376 NHP2 non-histone chromosome protein 2-like 1 [Homo
           sapiens]
          Length = 128

 Score =  251 bits (642), Expect = 8e-68
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60
           MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA
Sbjct: 1   MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60

Query: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120
           EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120

Query: 121 QSIERLLV 128
           QSIERLLV
Sbjct: 121 QSIERLLV 128


>gi|4826860 NHP2 non-histone chromosome protein 2-like 1 [Homo
           sapiens]
          Length = 128

 Score =  251 bits (642), Expect = 8e-68
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60
           MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA
Sbjct: 1   MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60

Query: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120
           EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120

Query: 121 QSIERLLV 128
           QSIERLLV
Sbjct: 121 QSIERLLV 128


>gi|8923444 nucleolar protein family A, member 2 isoform a [Homo
           sapiens]
          Length = 153

 Score = 95.9 bits (237), Expect = 8e-21
 Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 2/120 (1%)

Query: 7   NPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEII 66
           NP A PLA   LT+KL   ++++   KQ+R+G  E  K +N+G    +V+A D  P+E+ 
Sbjct: 32  NPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVY 91

Query: 67  LHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERL 126
            HLP++CED+N+PYV++ SK  LG A G  RP   C + +K   + ++      + ++ L
Sbjct: 92  CHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRP--TCVIMVKPHEEYQEAYDECLEEVQSL 149


>gi|4506661 ribosomal protein L7a [Homo sapiens]
          Length = 266

 Score = 50.4 bits (119), Expect = 4e-07
 Identities = 21/57 (36%), Positives = 33/57 (57%)

Query: 35  LRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGR 91
           LR G N  T  +    ++ +V+A D +P+E+++ LP LC    VPY  ++ K  LGR
Sbjct: 136 LRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGR 192


>gi|77812674 nucleolar protein family A, member 2 isoform b [Homo
          sapiens]
          Length = 90

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 18/43 (41%), Positives = 27/43 (62%)

Query: 7  NPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRG 49
          NP A PLA   LT+KL   ++++   KQ+R+G  E  K +N+G
Sbjct: 32 NPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKG 74


>gi|83779010 SECIS binding protein 2 [Homo sapiens]
          Length = 854

 Score = 32.0 bits (71), Expect = 0.14
 Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 33  KQLRKGANEATKTLNRGISEFIVMAADAEP------LEIILH--LPLLCEDKNVPYVFVR 84
           ++L  G  E  K L     + ++++ + E       L+  LH  +   CE +N+P+VF  
Sbjct: 671 RRLVLGLREVLKHLKLKKLKCVIISPNCEKIQSKGGLDDTLHTIIDYACE-QNIPFVFAL 729

Query: 85  SKQALGRACGVSRPVIACSVTIKEGSQ 111
           +++ALGR+   + PV    +   +G+Q
Sbjct: 730 NRKALGRSLNKAVPVSVVGIFSYDGAQ 756


>gi|148222745 ribonuclease P/MRP 38 subunit [Homo sapiens]
          Length = 283

 Score = 30.0 bits (66), Expect = 0.51
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 17  HLTKKLLDLVQQSCNY------KQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLP 70
           +L +K  D  QQ   +      KQL  G NE T+ L R     +++    +P  I  HL 
Sbjct: 89  NLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLI 148

Query: 71  LLCEDKNVP 79
            L   ++VP
Sbjct: 149 QLSLSRSVP 157


>gi|33859837 ribonuclease P/MRP 38 subunit [Homo sapiens]
          Length = 283

 Score = 30.0 bits (66), Expect = 0.51
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 17  HLTKKLLDLVQQSCNY------KQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLP 70
           +L +K  D  QQ   +      KQL  G NE T+ L R     +++    +P  I  HL 
Sbjct: 89  NLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLI 148

Query: 71  LLCEDKNVP 79
            L   ++VP
Sbjct: 149 QLSLSRSVP 157


>gi|148238078 ribonuclease P/MRP 38 subunit [Homo sapiens]
          Length = 283

 Score = 30.0 bits (66), Expect = 0.51
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 17  HLTKKLLDLVQQSCNY------KQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLP 70
           +L +K  D  QQ   +      KQL  G NE T+ L R     +++    +P  I  HL 
Sbjct: 89  NLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLI 148

Query: 71  LLCEDKNVP 79
            L   ++VP
Sbjct: 149 QLSLSRSVP 157


>gi|60685227 SECIS binding protein 2-like [Homo sapiens]
          Length = 1056

 Score = 29.6 bits (65), Expect = 0.67
 Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 7/74 (9%)

Query: 33  KQLRKGANEATKTLNRGISEFIVMAADAEPL-------EIILHLPLLCEDKNVPYVFVRS 85
           ++L  G  E TK +     + ++++ + E +       E + ++  +  ++ +P+VF   
Sbjct: 671 RRLVMGLREVTKHMKLNKIKCVIISPNCEKIQSKGGLDEALYNVIAMAREQEIPFVFALG 730

Query: 86  KQALGRACGVSRPV 99
           ++ALGR      PV
Sbjct: 731 RKALGRCVNKLVPV 744


>gi|157502193 proteasome 26S non-ATPase subunit 13 isoform 1 [Homo
           sapiens]
          Length = 376

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 10/109 (9%)

Query: 18  LTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKN 77
           LT ++LD VQ  C  +      +   K     ISEF         +EIILH+     D N
Sbjct: 37  LTLQVLDFVQDPCFAQ-----GDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPN 91

Query: 78  VPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERL 126
           V   F+   +   +       VI C   I     LK  I  +Q + E +
Sbjct: 92  VALTFLEKTRE--KVKSSDEAVILCKTAI---GALKLNIGDLQVTKETI 135


>gi|30025026 osteopetrosis associated transmembrane protein 1 [Homo
           sapiens]
          Length = 334

 Score = 26.6 bits (57), Expect = 5.7
 Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 28  QSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCED-KNVPYVFVRSK 86
           Q+ NY ++ K   EA KTL+   SE   M       E   HL +  ED  N+        
Sbjct: 213 QTKNYSEVCKNCREAYKTLSSLYSEMQKMNELENKAEPGTHLCIDVEDAMNITRKLWSRT 272

Query: 87  QALGRACGVSRPVIACSVTI 106
                 C  + PVIA SV I
Sbjct: 273 FNCSVPCSDTVPVIAVSVFI 292


>gi|239758001 PREDICTED: similar to facioscapulohumeral muscular
           dystrophy [Homo sapiens]
          Length = 300

 Score = 26.6 bits (57), Expect = 5.7
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 73  CEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQ 117
           C ++N PY+ + +++ L +A G+  P +      +  SQL+Q  Q
Sbjct: 131 CFERN-PYLGITTREQLAQAIGILEPRVQIWFQNERSSQLRQHRQ 174


>gi|61835172 fragile X mental retardation-related protein 1 isoform
           c [Homo sapiens]
          Length = 536

 Score = 26.6 bits (57), Expect = 5.7
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 74  EDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERL 126
           ED  VP+VFV +K+++G    +    IA    +KE  QL+ +   I + + ++
Sbjct: 244 EDGMVPFVFVGTKESIGNVQVLLEYHIA---YLKEVEQLRMERLQIDEQLRQI 293


>gi|61835164 fragile X mental retardation-related protein 1 isoform
           b [Homo sapiens]
          Length = 539

 Score = 26.6 bits (57), Expect = 5.7
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 74  EDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERL 126
           ED  VP+VFV +K+++G    +    IA    +KE  QL+ +   I + + ++
Sbjct: 329 EDGMVPFVFVGTKESIGNVQVLLEYHIA---YLKEVEQLRMERLQIDEQLRQI 378


>gi|61835148 fragile X mental retardation-related protein 1 isoform
           a [Homo sapiens]
          Length = 621

 Score = 26.6 bits (57), Expect = 5.7
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 74  EDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERL 126
           ED  VP+VFV +K+++G    +    IA    +KE  QL+ +   I + + ++
Sbjct: 329 EDGMVPFVFVGTKESIGNVQVLLEYHIA---YLKEVEQLRMERLQIDEQLRQI 378


>gi|62526031 neurochondrin isoform 2 [Homo sapiens]
          Length = 712

 Score = 26.2 bits (56), Expect = 7.4
 Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 48  RGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQA-LGRACG 94
           RG+SE    A DA   E+   LPL      VP    R  QA L R  G
Sbjct: 206 RGLSEDFQKAEDASKFELCQLLPLFLPPTTVPPECYRDLQAGLARILG 253


>gi|24307949 neurochondrin isoform 1 [Homo sapiens]
          Length = 729

 Score = 26.2 bits (56), Expect = 7.4
 Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 48  RGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQA-LGRACG 94
           RG+SE    A DA   E+   LPL      VP    R  QA L R  G
Sbjct: 223 RGLSEDFQKAEDASKFELCQLLPLFLPPTTVPPECYRDLQAGLARILG 270


>gi|62526029 neurochondrin isoform 1 [Homo sapiens]
          Length = 729

 Score = 26.2 bits (56), Expect = 7.4
 Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 48  RGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQA-LGRACG 94
           RG+SE    A DA   E+   LPL      VP    R  QA L R  G
Sbjct: 223 RGLSEDFQKAEDASKFELCQLLPLFLPPTTVPPECYRDLQAGLARILG 270


>gi|239758067 PREDICTED: similar to facioscapulohumeral muscular
           dystrophy [Homo sapiens]
          Length = 468

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 73  CEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQ 114
           C ++N PY+ + +++ L +A G+  P +      +  SQL+Q
Sbjct: 131 CFERN-PYLGITTREQLAQAIGILEPRVPIWFQNERSSQLRQ 171


>gi|239752536 PREDICTED: hypothetical protein XP_002346688 [Homo
           sapiens]
          Length = 236

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 73  CEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQ 114
           C ++N PY+ + +++ L +A G+  P +      +  SQL+Q
Sbjct: 75  CFERN-PYLGITTREQLAQAIGILEPRVPIWFQNERSSQLRQ 115


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,120,208
Number of Sequences: 37866
Number of extensions: 142251
Number of successful extensions: 426
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 414
Number of HSP's gapped (non-prelim): 21
length of query: 128
length of database: 18,247,518
effective HSP length: 90
effective length of query: 38
effective length of database: 14,839,578
effective search space: 563903964
effective search space used: 563903964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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