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Search of human proteins with 50409738
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
(352 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 689 0.0
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens] 682 0.0
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens] 660 0.0
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens] 624 e-179
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 80 4e-15
gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens] 74 2e-13
gi|42560244 peptidylprolyl isomerase G [Homo sapiens] 70 3e-12
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 68 1e-11
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 67 2e-11
gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo s... 67 2e-11
gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens] 67 3e-11
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 66 5e-11
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 66 5e-11
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 66 5e-11
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 66 5e-11
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 65 7e-11
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 65 7e-11
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 65 7e-11
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote... 65 7e-11
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ... 65 9e-11
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [... 65 9e-11
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 65 1e-10
gi|168229156 NFKB activating protein [Homo sapiens] 64 2e-10
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 64 2e-10
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 64 3e-10
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 64 3e-10
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens] 64 3e-10
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 63 5e-10
gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens] 63 5e-10
gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens] 63 5e-10
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 689 bits (1779), Expect = 0.0
Identities = 352/352 (100%), Positives = 352/352 (100%)
Query: 1 MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL
Sbjct: 1 MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA
Sbjct: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSK 180
RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSK
Sbjct: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSK 180
Query: 181 QKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKG 240
QKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKG
Sbjct: 181 QKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKG 240
Query: 241 KEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIR 300
KEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIR
Sbjct: 241 KEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIR 300
Query: 301 KVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP 352
KVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP
Sbjct: 301 KVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP 352
>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
Length = 360
Score = 682 bits (1760), Expect = 0.0
Identities = 352/360 (97%), Positives = 352/360 (97%), Gaps = 8/360 (2%)
Query: 1 MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL
Sbjct: 1 MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA
Sbjct: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAE---- 176
RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAE
Sbjct: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPS 180
Query: 177 ----ERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKK 232
ERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKK
Sbjct: 181 PCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKK 240
Query: 233 RKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEW 292
RKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEW
Sbjct: 241 RKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEW 300
Query: 293 DARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP 352
DARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP
Sbjct: 301 DARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP 360
>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
Length = 341
Score = 660 bits (1702), Expect = 0.0
Identities = 341/352 (96%), Positives = 341/352 (96%), Gaps = 11/352 (3%)
Query: 1 MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL
Sbjct: 1 MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA
Sbjct: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSK 180
RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQ ERSK
Sbjct: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQ-----------ERSK 169
Query: 181 QKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKG 240
QKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKG
Sbjct: 170 QKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKG 229
Query: 241 KEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIR 300
KEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIR
Sbjct: 230 KEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIR 289
Query: 301 KVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP 352
KVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP
Sbjct: 290 KVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP 341
>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
Length = 338
Score = 624 bits (1608), Expect = e-179
Identities = 323/334 (96%), Positives = 323/334 (96%), Gaps = 11/334 (3%)
Query: 1 MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL
Sbjct: 1 MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA
Sbjct: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSK 180
RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQ ERSK
Sbjct: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQ-----------ERSK 169
Query: 181 QKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKG 240
QKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKG
Sbjct: 170 QKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKG 229
Query: 241 KEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIR 300
KEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIR
Sbjct: 230 KEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIR 289
Query: 301 KVVDPETGRTRLIKGDGEVLEEIVTKERHREINK 334
KVVDPETGRTRLIKGDGEVLEEIVTKERHREINK
Sbjct: 290 KVVDPETGRTRLIKGDGEVLEEIVTKERHREINK 323
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 79.7 bits (195), Expect = 4e-15
Identities = 45/119 (37%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Query: 126 HVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARR 185
H S+ ++++RSRSRGR + K+ K SR+ S+S+S S++ G+ S + R
Sbjct: 549 HPESKSKTKTRSRSRGRA----RNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSR 604
Query: 186 RTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKA 244
+ SSSSS+S SSS SSSS+SSSS S + RG +D++ ++ RK+ G E++
Sbjct: 605 SSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERS 663
Score = 62.0 bits (149), Expect = 8e-10
Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 18/171 (10%)
Query: 62 SAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRAR 121
S GRAR+ T R++ S ++ S ++ ++ +SS + S G +R
Sbjct: 560 SRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSR 619
Query: 122 GAMAHVGSRKRSRSRSRSRGRGSEKRKKKS----RKDTS-RNCSASTSQGRKASTAPGAE 176
+ + S SRSRSR RG +++ ++S R+DTS S +S+G + G++
Sbjct: 620 DSSSSTSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSK 679
Query: 177 ERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRR 227
+++ + R+R+ S SS S SS S R ++ KDKRR
Sbjct: 680 DKNSRSDRKRSISESSRSGKRSSRSE-------------RDRKSDRKDKRR 717
Score = 47.0 bits (110), Expect = 3e-05
Identities = 45/147 (30%), Positives = 59/147 (40%), Gaps = 12/147 (8%)
Query: 176 EERSKQKARRRTRS----------SSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDK 225
E +SK K R R+R S SSSSSSSSSSS+SSSS SSSSS R
Sbjct: 551 ESKSKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSS 610
Query: 226 RRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEE--DGPVLTDEQKSRIQA 283
+ +E++ G + D+ HR + + + D L KS
Sbjct: 611 SSTSGSSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGG 670
Query: 284 MKPMTKEEWDARQSIIRKVVDPETGRT 310
TK D RK E+ R+
Sbjct: 671 SSRDTKGSKDKNSRSDRKRSISESSRS 697
Score = 45.1 bits (105), Expect = 1e-04
Identities = 44/164 (26%), Positives = 62/164 (37%), Gaps = 14/164 (8%)
Query: 86 SRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRS-RSRSRSRGRGS 144
+R SR R + S K+R S + + GS S S SRS S
Sbjct: 558 TRSRSRGRARNKTS-------KSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSS 610
Query: 145 EKRKKKSRKDTSRNCSASTSQGRKASTAPG-----AEERSKQKARRRTRSSSSSSSSSSS 199
S +D+S + S S+S+ R S G RS + RR T S SS
Sbjct: 611 SSTSGSSSRDSSSSTS-SSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKG 669
Query: 200 SSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 243
SS + S +S +KR + R K+ R + +K K
Sbjct: 670 GSSRDTKGSKDKNSRSDRKRSISESSRSGKRSSRSERDRKSDRK 713
Score = 34.7 bits (78), Expect = 0.13
Identities = 31/164 (18%), Positives = 63/164 (38%), Gaps = 24/164 (14%)
Query: 104 PLEKARGGLSGPQGGRARG------------------------AMAHVGSRKRSRSRSRS 139
P++ LSGP GGR RG A++ +G +R+R SR
Sbjct: 39 PIQARLLALSGPGGGRGRGSLLLRRGFSDSGGGPPAKQRDLEGAVSRLGGERRTRRESRQ 98
Query: 140 RGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSS 199
+ KK +S ++ R +E+ KQ+ RR +
Sbjct: 99 ESDPEDDDVKKPALQSSVVATSKERTRRDLIQDQNMDEKGKQRNRRIFGLLMGTLQKFKQ 158
Query: 200 SSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 243
S+ ++ +K + +++R++ + +R++L ++ + K
Sbjct: 159 ESTVATERQKRRQEIEQKLEVQAEEERKQVENERRELFEERRAK 202
Score = 30.4 bits (67), Expect = 2.5
Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 214 DGRKKRGKYKDKRRK--KKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGP 271
+ R +R K+K + + +++K +++GK +++E D AGEEE+
Sbjct: 282 EARPRRQSMKEKEHQVVRNEEQKAEQEEGKVAQREEELEETGNQHNDVEIEEAGEEEEKE 341
Query: 272 VL--------TDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPE 306
+ E++ + Q M+ +EE + R+S ++ PE
Sbjct: 342 IAIVHSDAEKEQEEEEQKQEMEVKMEEETEVRESEKQQDSQPE 384
>gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]
Length = 484
Score = 74.3 bits (181), Expect = 2e-13
Identities = 61/233 (26%), Positives = 101/233 (43%), Gaps = 32/233 (13%)
Query: 115 PQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKA----- 169
P R R + + R S+SRSR R + +R+ SR+ R+ S S ++ +K
Sbjct: 261 PSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKTRDKKKEDKEK 320
Query: 170 ----------STAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKR 219
STA + S+++ RRR+RS + S S S S S KK+
Sbjct: 321 KRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKKK 380
Query: 220 GKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKS 279
K K++ R ++++ KKK K+K + ++ ++ + Q R EEE G D +K
Sbjct: 381 DKDKERSRDERERSTSKKKKSKDKEKDRERKSESDKDVKQVTRDYDEEEQG---YDSEKE 437
Query: 280 RIQAMKPMTKEEWDARQSIIRKVVDPETGRTRLIKGDGEVLEEI-VTKERHRE 331
+ + KP+ + P+T + KG G+ L E V + H E
Sbjct: 438 KKEEKKPI-------------ETGSPKTKECSVEKGTGDSLRESKVNGDDHHE 477
Score = 37.4 bits (85), Expect = 0.020
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 169 ASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRK 228
A+ P +E ++ +R R+RS + SSS S S S S S R +R +RR+
Sbjct: 235 AAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRR 294
Query: 229 K------KKKRKKLKKKGKEKAEAQQVEALPGP---SLDQWHRSAGEE 267
++ R K + K+K + ++ + P S + RSA E
Sbjct: 295 SHSRERGRRSRSTSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSASRE 342
Score = 31.6 bits (70), Expect = 1.1
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 155 TSRNCSASTSQGRKA-STAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSS 213
+S+ + + R+A S A E K++ +R R S S S S + SSS S S
Sbjct: 215 SSKEIEEAMKRVREAQSLISAAIEPDKKEEKR--RHSRSRSRSRRRRTPSSSRHRRSRSR 272
Query: 214 DGRKKRGKYKDKRRKKKKKRKK 235
R+ K + +RR K +R++
Sbjct: 273 SRRRSHSKSRSRRRSKSPRRRR 294
>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
Length = 754
Score = 70.1 bits (170), Expect = 3e-12
Identities = 41/89 (46%), Positives = 55/89 (61%), Gaps = 11/89 (12%)
Query: 176 EERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDG-----------RKKRGKYKD 224
+ + K++ ++R +SSSSSSSSSS S SSS S SSS SSD +KK K
Sbjct: 180 KSKVKKEEKKRHKSSSSSSSSSSDSDSSSDSQSSSDSSDSESATEEKSKKRKKKHRKNSR 239
Query: 225 KRRKKKKKRKKLKKKGKEKAEAQQVEALP 253
K +K+KKKRKK KK ++EA+ +EA P
Sbjct: 240 KHKKEKKKRKKSKKSASSESEAENLEAQP 268
Score = 49.7 bits (117), Expect = 4e-06
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 11/125 (8%)
Query: 119 RARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEER 178
R+R V SR R RSRS+ + ++ R+ SR+ R+ T PG R
Sbjct: 567 RSRDRSRRVRSRTHDRDRSRSKEYHRYREQEYRRRGRSRS--------RERRTPPG---R 615
Query: 179 SKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKK 238
S+ K RRR R S SS S S + + S +K +KR K +
Sbjct: 616 SRSKDRRRRRRDSRSSEREESQSRNKDKYRNQESKSSHRKENSESEKRMYSKSRDHNSSN 675
Query: 239 KGKEK 243
+EK
Sbjct: 676 NSREK 680
Score = 48.9 bits (115), Expect = 7e-06
Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 13/198 (6%)
Query: 107 KARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSR----KDTSRNCSAS 162
K+R + R + + KR RSRS+ R + K K+K KD R+ S
Sbjct: 459 KSRSKSKEKSKSKERDSKHNRNEEKRMRSRSKGRDHENVKEKEKQSDSKGKDQERSRSKE 518
Query: 163 TSQGRKASTAPGAEERSKQKARR-RTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGK 221
S+ ++ + +SK+K RR ++RS + S +S + S S R+ R +
Sbjct: 519 KSKQLESKSNEHDHSKSKEKDRRAQSRSRECDITKGKHSYNSRTRERSRSRDRSRRVRSR 578
Query: 222 YKDKRRKKKK-----KRKKLKKKGKEKAEAQQVEALPGPSLDQWHR---SAGEEEDGPVL 273
D+ R + K + ++ +++G+ ++ ++ S D+ R S E +
Sbjct: 579 THDRDRSRSKEYHRYREQEYRRRGRSRSRERRTPPGRSRSKDRRRRRRDSRSSEREESQS 638
Query: 274 TDEQKSRIQAMKPMTKEE 291
++ K R Q K ++E
Sbjct: 639 RNKDKYRNQESKSSHRKE 656
Score = 48.1 bits (113), Expect = 1e-05
Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 11/158 (6%)
Query: 130 RKRSRSRSRSR----GRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARR 185
R+R RSRSR R GR K +++ R+D SR+ SQ R E SK R+
Sbjct: 599 RRRGRSRSRERRTPPGRSRSKDRRRRRRD-SRSSEREESQSRNKDKYRNQE--SKSSHRK 655
Query: 186 RTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAE 245
S S S +SS++S + + K K + + K LK K EK
Sbjct: 656 ENSESEKRMYSKSRDHNSSNNSREKKADRDQSPFSKIKQSSQDNELKSSMLKNKEDEKIR 715
Query: 246 A---QQVEALPGPSLDQWH-RSAGEEEDGPVLTDEQKS 279
+ ++ + G D H ++ + + TDE KS
Sbjct: 716 SSVEKENQKSKGQENDHVHEKNKKFDHESSPGTDEDKS 753
Score = 47.0 bits (110), Expect = 3e-05
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 1/126 (0%)
Query: 127 VGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRR 186
V R +S+SRS+S+ + K + S S+GR E++S K + +
Sbjct: 452 VKKRAKSKSRSKSKEKSKSKERDSKHNRNEEKRMRSRSKGRDHENVKEKEKQSDSKGKDQ 511
Query: 187 TRSSSSSSSSSSSSSSSSSSSSSSSSSDGR-KKRGKYKDKRRKKKKKRKKLKKKGKEKAE 245
RS S S S S+ S S D R + R + D + K + +++ + +
Sbjct: 512 ERSRSKEKSKQLESKSNEHDHSKSKEKDRRAQSRSRECDITKGKHSYNSRTRERSRSRDR 571
Query: 246 AQQVEA 251
+++V +
Sbjct: 572 SRRVRS 577
Score = 42.0 bits (97), Expect = 8e-04
Identities = 50/194 (25%), Positives = 80/194 (41%), Gaps = 18/194 (9%)
Query: 76 RTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRS 135
R++ + SR R R + E R G S + R + R+R R
Sbjct: 567 RSRDRSRRVRSRTHDRDRSRSKEYHRYREQEYRRRGRSRSRERRTPPGRSRSKDRRRRRR 626
Query: 136 RSRSRGRGSEKRKKKSR-KDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSS 194
SRS SE+ + +SR KD RN + +S ++ S +E+R K+R SS++S
Sbjct: 627 DSRS----SEREESQSRNKDKYRNQESKSSHRKENSE---SEKRMYSKSRDH-NSSNNSR 678
Query: 195 SSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKK---KRKKLKKKGKEKAEAQQV-- 249
+ S S SS D K K+K +K + +++ K KG+E +
Sbjct: 679 EKKADRDQSPFSKIKQSSQDNELKSSMLKNKEDEKIRSSVEKENQKSKGQENDHVHEKNK 738
Query: 250 ----EALPGPSLDQ 259
E+ PG D+
Sbjct: 739 KFDHESSPGTDEDK 752
Score = 39.7 bits (91), Expect = 0.004
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 12/161 (7%)
Query: 130 RKRSRSRSRSRGRGSEK----RKKKSRKDTSRNCSAST-SQGRKASTAPGAE-ERSKQKA 183
R SRSRSR R R SE R++ R R S +G K+ E +RS +
Sbjct: 342 RTPSRSRSRDRFRRSETPPHWRQEMQRAQRMRVSSGERWIKGDKSELNEIKENQRSPVRV 401
Query: 184 RRRT----RSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKK- 238
+ R R+ S S + + S+S ++ + DK + K KKR K K
Sbjct: 402 KERKITDHRNVSESPNRKNEKEKKVKDHKSNSKERDIRRNSEKDDKYKNKVKKRAKSKSR 461
Query: 239 -KGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQK 278
K KEK+++++ ++ + ++ RS + D + +++K
Sbjct: 462 SKSKEKSKSKERDSKHNRNEEKRMRSRSKGRDHENVKEKEK 502
Score = 39.7 bits (91), Expect = 0.004
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 11/119 (9%)
Query: 132 RSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSS 191
+S S+ R R SEK K K R S S S+ ++ S +SK++ + R+
Sbjct: 430 KSNSKERDIRRNSEKDDKYKNKVKKRAKSKSRSKSKEKS-------KSKERDSKHNRNEE 482
Query: 192 SSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVE 250
S S + SD + K +R + K+K K+L+ K E ++ E
Sbjct: 483 KRMRSRSKGRDHENVKEKEKQSDSKGK----DQERSRSKEKSKQLESKSNEHDHSKSKE 537
Score = 38.9 bits (89), Expect = 0.007
Identities = 45/210 (21%), Positives = 79/210 (37%), Gaps = 14/210 (6%)
Query: 74 GVRTKGSGAA---LPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA-----RGAMA 125
G + KG G PSR SR R + P E R G + +
Sbjct: 330 GRKIKGRGPRRYRTPSRSRSRDRFRRSETPPHWRQEMQRAQRMRVSSGERWIKGDKSELN 389
Query: 126 HVGSRKRSRSRSRSRG-----RGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSK 180
+ +RS R + R SE +K+ K+ S S+ R +++ K
Sbjct: 390 EIKENQRSPVRVKERKITDHRNVSESPNRKNEKEKKVKDHKSNSKERDIRRNSEKDDKYK 449
Query: 181 QKARRRTRSSS-SSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKK 239
K ++R +S S S S S S S + + R + + K+K+K+ K K
Sbjct: 450 NKVKKRAKSKSRSKSKEKSKSKERDSKHNRNEEKRMRSRSKGRDHENVKEKEKQSDSKGK 509
Query: 240 GKEKAEAQQVEALPGPSLDQWHRSAGEEED 269
+E++ +++ ++ S +E+D
Sbjct: 510 DQERSRSKEKSKQLESKSNEHDHSKSKEKD 539
Score = 37.7 bits (86), Expect = 0.016
Identities = 44/253 (17%), Positives = 92/253 (36%), Gaps = 28/253 (11%)
Query: 75 VRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSR 134
VR G +P + + SS + S + + + + ++S+
Sbjct: 169 VRILSCGELIPKSKVKKEEKKRHKSSSSSSSSSSDSDSSSDSQSSSDSSDSESATEEKSK 228
Query: 135 SRSRSRGRGSEKRK------KKSRKDTSRNCSASTSQGRKASTA---------------- 172
R + + S K K KKS+K S A + + ST
Sbjct: 229 KRKKKHRKNSRKHKKEKKKRKKSKKSASSESEAENLEAQPQSTVRPEEIPPIPENRFLMR 288
Query: 173 ---PGAEERS-KQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRK 228
P A+E+ K + R R R + +S +S + S GR R R +
Sbjct: 289 KSPPKADEKERKNRERERERECNPPNSQPASYQRRLLVTRSGRKIKGRGPRRYRTPSRSR 348
Query: 229 KKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMT 288
+ + ++ + + E Q+ + + S ++W + G++ + + + Q+S ++ +
Sbjct: 349 SRDRFRRSETPPHWRQEMQRAQRMRVSSGERWIK--GDKSELNEIKENQRSPVRVKERKI 406
Query: 289 KEEWDARQSIIRK 301
+ + +S RK
Sbjct: 407 TDHRNVSESPNRK 419
Score = 35.8 bits (81), Expect = 0.059
Identities = 44/220 (20%), Positives = 81/220 (36%), Gaps = 32/220 (14%)
Query: 138 RSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERS---------KQKARRRTR 188
+S+ + EK++ KS +S + S S S S++ ++ S K+K R+ +R
Sbjct: 180 KSKVKKEEKKRHKSSSSSSSSSSDSDSSSDSQSSSDSSDSESATEEKSKKRKKKHRKNSR 239
Query: 189 SSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDK----------RRKKKKKRKKLKK 238
S S+SS S + + + + + ++ RK K + ++
Sbjct: 240 KHKKEKKKRKKSKKSASSESEAENLEAQPQSTVRPEEIPPIPENRFLMRKSPPKADEKER 299
Query: 239 KGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVL----------TDEQKSRIQAMKPMT 288
K +E+ ++ P + R G + +SR + + T
Sbjct: 300 KNRERERERECNP-PNSQPASYQRRLLVTRSGRKIKGRGPRRYRTPSRSRSRDRFRRSET 358
Query: 289 KEEWDARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKER 328
W RQ + R + R IKGD L EI +R
Sbjct: 359 PPHW--RQEMQRAQRMRVSSGERWIKGDKSELNEIKENQR 396
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 68.2 bits (165), Expect = 1e-11
Identities = 61/200 (30%), Positives = 85/200 (42%), Gaps = 35/200 (17%)
Query: 56 PAPLLASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGP 115
PAP A+A G R + R + A + +S P P A + P +K R
Sbjct: 503 PAPAPAAAAGPPTRKKSRRERKRSGEAKEAASSSSGTQPAPPAPASPWDSKKHRS----- 557
Query: 116 QGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGA 175
R R +H S R RSRSRSR R + +R S ST + R S
Sbjct: 558 ---RDRKPGSHASSSARRRSRSRSRSRSTRRR------------SRSTDRRRGGSR---- 598
Query: 176 EERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 235
RS++K RRR RS+S ++SSSS SS + RGK++D KKKK++
Sbjct: 599 RSRSREKRRRRRRSASPPPATSSSS-----SSRR------ERHRGKHRDGGGSKKKKKRS 647
Query: 236 LKKKGKEKAEAQQVEALPGP 255
+ K + + P P
Sbjct: 648 RSRGEKRSGDGSEKAPAPAP 667
Score = 50.8 bits (120), Expect = 2e-06
Identities = 55/230 (23%), Positives = 90/230 (39%), Gaps = 29/230 (12%)
Query: 65 GGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASS--------PPLPLEKARGGLSGPQ 116
GGRA T + LP PA RA + S L ++ + P
Sbjct: 413 GGRAARPTPAASATPTAQPLPQPPAPRAPEGDDFLSLHAESDGEGALQVDLGEPAPAPPA 472
Query: 117 GGRARGAM---AHVGSRKRSRSRSRS---------RGRGSEKRKKKSRKDTSRNC----S 160
G + + +++R R R RS +KKSR++ R+ +
Sbjct: 473 ADSRWGGLDLRRKILTQRRERYRQRSPSPAPAPAPAAAAGPPTRKKSRRERKRSGEAKEA 532
Query: 161 ASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRG 220
AS+S G + + A +K R R R S +SSS+ S S S S S+ ++R
Sbjct: 533 ASSSSGTQPAPPAPASPWDSKKHRSRDRKPGSHASSSARRRSRSRSRSRST-----RRRS 587
Query: 221 KYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDG 270
+ D+RR ++ + +K+ + + A A S + R G+ DG
Sbjct: 588 RSTDRRRGGSRRSRSREKRRRRRRSASPPPATSSSSSSRRERHRGKHRDG 637
Score = 46.2 bits (108), Expect = 4e-05
Identities = 71/287 (24%), Positives = 110/287 (38%), Gaps = 30/287 (10%)
Query: 21 RAPGAWVLRACA---ERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARDGTWGVRT 77
RA GA R E A G S + G GA P PLL G +G
Sbjct: 343 RADGAMRRRVFVVGTEAEACREGKVSVEVVTAG-GAALPPPLLPP-GDSEIEEGEIVQPE 400
Query: 78 KGSGAALPS-RPASRAA-PRPEASSPPL-------PLEKARGG---LSGPQGGRARGAM- 124
+ AL RP RAA P P AS+ P P +A G LS GA+
Sbjct: 401 EEPRLALSLFRPGGRAARPTPAASATPTAQPLPQPPAPRAPEGDDFLSLHAESDGEGALQ 460
Query: 125 AHVGSRKRSRSRSRSRGRGSEKRKK--KSRKDTSRNCSASTSQGRKASTAPGAEERSKQK 182
+G + + SR G + R+K R++ R S S + + A G R K +
Sbjct: 461 VDLGEPAPAPPAADSRWGGLDLRRKILTQRRERYRQRSPSPAPAPAPAAAAGPPTRKKSR 520
Query: 183 ARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKD---------KRRKKKKKR 233
R R RS + ++SSSS + + + +S D +K R + + +RR + + R
Sbjct: 521 -RERKRSGEAKEAASSSSGTQPAPPAPASPWDSKKHRSRDRKPGSHASSSARRRSRSRSR 579
Query: 234 KKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSR 280
+ ++ + ++ + S ++ R P + SR
Sbjct: 580 SRSTRRRSRSTDRRRGGSRRSRSREKRRRRRRSASPPPATSSSSSSR 626
Score = 39.3 bits (90), Expect = 0.005
Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 12/115 (10%)
Query: 114 GPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAP 173
GP A V S G+ S+K +++S +S + S RKA
Sbjct: 717 GPSPAPASSPKREVLYDSEGLSGEERGGKSSQKDRRRSGAASSSSSSREKGSRRKALDG- 775
Query: 174 GAEERSKQKARRRTRSSSSSSSSSSSS-----------SSSSSSSSSSSSSDGRK 217
G +R + + R R RSS + S+ SS S SSSSSSS RK
Sbjct: 776 GDRDRDRDRDRDRDRSSKKARPPKESAPSSGPPPKPPVSSGSGSSSSSSSCSSRK 830
Score = 38.5 bits (88), Expect = 0.009
Identities = 53/206 (25%), Positives = 72/206 (34%), Gaps = 57/206 (27%)
Query: 81 GAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSR 140
G + SR + R ++SPP + G+ R +KRSRSR R
Sbjct: 595 GGSRRSRSREKRRRRRRSASPPPATSSSSSSRRERHRGKHRDGGGSKKKKKRSRSRGEKR 654
Query: 141 -GRGSEKRKKKSRKDT-SRNCSASTSQGRKA----------------------------- 169
G GSEK + + S +C S+ R A
Sbjct: 655 SGDGSEKAPAPAPPPSGSTSCGDRDSRRRGAVPPSIQDLTDHDLFAIKRTITVGRLDKSD 714
Query: 170 ----STAPGA---------------EER---SKQKARRRTRSSSSSSSSSSSSSSSSSSS 207
S AP + EER S QK RRR S ++SSSSSS S
Sbjct: 715 PRGPSPAPASSPKREVLYDSEGLSGEERGGKSSQKDRRR----SGAASSSSSSREKGSRR 770
Query: 208 SSSSSSDGRKKRGKYKDKRRKKKKKR 233
+ D + R + +D+ R KK R
Sbjct: 771 KALDGGDRDRDRDRDRDRDRSSKKAR 796
Score = 38.5 bits (88), Expect = 0.009
Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 8/205 (3%)
Query: 50 GCGARGPAPLLASAGGGRARDGTWGVRTKGSGAALPSR--PASRAAPRPEASSPPLPLEK 107
G + PA ASAG G R S P P A P ++ P K
Sbjct: 844 GVSSTTPAKDAASAGLGSIGVKFSRDRESRSPFLKPDERAPTEMAKAAPGSTKPKKTKVK 903
Query: 108 ARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCS-ASTSQG 166
A+ G +G +G +RK+ RS S G G + KKS+ D +CS A+ ++G
Sbjct: 904 AKAGAKKTKG--TKGKTKPSKTRKKVRSGGGSGGSGGQVSLKKSKAD---SCSQAAGTKG 958
Query: 167 RKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKR 226
+ ++ G E +K + +++ + + S + SS + S ++ + R
Sbjct: 959 AEETSWSGEERAAKVPSTPPPKAAPPPPALTPDSQTVDSSCKTPEVSFLPEEATEEAGVR 1018
Query: 227 RKKKKKRKKLKKKGKEKAEAQQVEA 251
+++ ++ +++ +E+ E +Q A
Sbjct: 1019 GGAEEEEEEEEEEEEEEEEEEQQPA 1043
Score = 38.1 bits (87), Expect = 0.012
Identities = 49/181 (27%), Positives = 71/181 (39%), Gaps = 25/181 (13%)
Query: 93 APRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRS---RSRSRSRGRGSEKRKK 149
+P P ASSP + GLSG + RG + R+RS S S SR +GS ++
Sbjct: 719 SPAP-ASSPKREVLYDSEGLSGEE----RGGKSSQKDRRRSGAASSSSSSREKGSRRKAL 773
Query: 150 KSR-KDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSS--- 205
+D R+ + K + P S + SS S SSSSSSS SS
Sbjct: 774 DGGDRDRDRDRDRDRDRSSKKARPPKESAPSSGPPPKPPVSSGSGSSSSSSSCSSRKVKL 833
Query: 206 ------------SSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALP 253
SS++ + G K + ++ R K E+A + +A P
Sbjct: 834 QSKVAVLIREGVSSTTPAKDAASAGLGSIGVKFSRDRESRSPFLKP-DERAPTEMAKAAP 892
Query: 254 G 254
G
Sbjct: 893 G 893
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 67.0 bits (162), Expect = 2e-11
Identities = 65/267 (24%), Positives = 101/267 (37%), Gaps = 17/267 (6%)
Query: 81 GAALPSRPAS--RAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSR 138
G P R AS R + +SS +R R G G RSRSRS
Sbjct: 363 GGPAPGRNASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSRSW 422
Query: 139 SRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSS------ 192
SR R +R +SR R+ + G + S +P + R R+RS S
Sbjct: 423 SRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYSRSPARRGGYGPRRRSRSRSHSGDRYRRG 482
Query: 193 -------SSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAE 245
SSS S SS S S S S S + + + R + + + +EK
Sbjct: 483 GRGLRHHSSSRSRSSWSLSPSRSRSLTRSRSHSPSPSQSRSRSRSRSQSPSPSPAREKLT 542
Query: 246 AQQVEALPGPSLDQWHRSAGEEEDG--PVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVV 303
G L + +AG+E P LT ++K +++ K + ++ +++ K++
Sbjct: 543 RPAASPAVGEKLKKTEPAAGKETGAAKPKLTPQEKLKLRMQKALNRQFKADKKAAQEKMI 602
Query: 304 DPETGRTRLIKGDGEVLEEIVTKERHR 330
E R + +I KER R
Sbjct: 603 QQEHERQEREDELRAMARKIRMKERER 629
Score = 52.8 bits (125), Expect = 5e-07
Identities = 80/328 (24%), Positives = 123/328 (37%), Gaps = 61/328 (18%)
Query: 33 ERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARDGTWGVRTKGSGAALPSRPASRA 92
E AA AA+A G P P GG A R + S ++ S + +
Sbjct: 337 EEAAAAAAAAAASGVTTGKPPAPPQP------GGPAPGRNASARRRSSSSSSSSSASRTS 390
Query: 93 APRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSR----SRSRGR-----G 143
+ R + S ++R G + GR + + SR RSRSR SRSRGR G
Sbjct: 391 SSRSSSRSS----SRSRRGGGYYRSGRHARSRSRSWSRSRSRSRRYSRSRSRGRRHSGGG 446
Query: 144 SEKRKKKSRKDT----------SRNCSASTSQGRK---------ASTAPGAEERSKQKAR 184
S + SR SR+ S S + R+ +S + + S ++R
Sbjct: 447 SRDGHRYSRSPARRGGYGPRRRSRSRSHSGDRYRRGGRGLRHHSSSRSRSSWSLSPSRSR 506
Query: 185 RRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKK--------------------RGKYKD 224
TRS S S S S S S S S S S S S R+K GK
Sbjct: 507 SLTRSRSHSPSPSQSRSRSRSRSQSPSPSPAREKLTRPAASPAVGEKLKKTEPAAGKETG 566
Query: 225 KRRKKKKKRKKLKKKGKEKAEAQ---QVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRI 281
+ K ++KLK + ++ Q +A + Q H E++ + + + +
Sbjct: 567 AAKPKLTPQEKLKLRMQKALNRQFKADKKAAQEKMIQQEHERQEREDELRAMARKIRMKE 626
Query: 282 QAMKPMTKEEWDARQSIIRKVVDPETGR 309
+ + +EEW+ + S + P R
Sbjct: 627 RERREKEREEWERQYSRQSRSPSPRYSR 654
Score = 42.7 bits (99), Expect = 5e-04
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTR 188
S RSRSRS + GR + S + +A+ + + G Q
Sbjct: 309 SESRSRSRSPTPGREEKITFITSFGGSDEEAAAAAAAAAASGVTTGKPPAPPQPGGPAPG 368
Query: 189 SSSSSSSSSSSSSSSSSS-------SSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGK 241
++S+ SSSSSSSSS+ SSS SSS R+ G Y+ R + + R + + +
Sbjct: 369 RNASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSRSWSRSRSR 428
Query: 242 EK 243
+
Sbjct: 429 SR 430
Score = 30.4 bits (67), Expect = 2.5
Identities = 22/104 (21%), Positives = 38/104 (36%)
Query: 131 KRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSS 190
KRS S S S R + R++ ++ +A+ A A S +
Sbjct: 301 KRSPSESSSESRSRSRSPTPGREEKITFITSFGGSDEEAAAAAAAAAASGVTTGKPPAPP 360
Query: 191 SSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRK 234
+ ++S+ SSSSSSS + + R + R+
Sbjct: 361 QPGGPAPGRNASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRR 404
>gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo
sapiens]
Length = 434
Score = 67.0 bits (162), Expect = 2e-11
Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 10/157 (6%)
Query: 96 PEASSPPLPLEKARGGLS-GPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSR-- 152
PE +SP +K + +S P+ + H SR RSRSR R R +E RK +SR
Sbjct: 13 PEKTSPDRDKKKEQSEVSVSPRASK------HHYSRSRSRSRERKRKSDNEGRKHRSRSR 66
Query: 153 -KDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSS 211
K+ R+ S S + S +E S K R R SS + SS S S
Sbjct: 67 SKEGRRHESKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHS 126
Query: 212 SSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQ 248
S R++R + + + RKK + R + +KK + ++ ++
Sbjct: 127 RSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERK 163
Score = 55.5 bits (132), Expect = 7e-08
Identities = 48/225 (21%), Positives = 98/225 (43%), Gaps = 28/225 (12%)
Query: 130 RKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGR-KASTAPGAEERSKQKARRRTR 188
R RSRS+ R +K KK + + + S+ +GR + +++ E+R K+K R+
Sbjct: 62 RSRSRSKEGRRHESKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERK--- 118
Query: 189 SSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQ 248
SS S S S S S S + +K R + +++++ + + R++ K + + + ++
Sbjct: 119 ---SSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKKSRSRSRERKRR 175
Query: 249 VEALPGPSLDQWHRSAGEEEDGPVLTDEQK------------SRIQAMKPM--TKEEWDA 294
+ + HR+ D +K SR + P DA
Sbjct: 176 IRSRSRSRSRHRHRTRSRSRTRSRSRDRKKRIEKPRRFSRSLSRTPSPPPFRGRNTAMDA 235
Query: 295 RQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATRG 339
++++ R++ R + ++ E +E+V K++ +EI A G
Sbjct: 236 QEALARRL-----ERAKKLQEQRE--KEMVEKQKQQEIAAAAATG 273
Score = 52.8 bits (125), Expect = 5e-07
Identities = 40/174 (22%), Positives = 75/174 (43%), Gaps = 5/174 (2%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKA----R 184
S + R R S G ++ K+K RK +SR S S S+ R+ + ER K ++ R
Sbjct: 94 SSDKGRERLNSSENGEDRHKRKERK-SSRGRSHSRSRSRERRHRSRSRERKKSRSRSRER 152
Query: 185 RRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKA 244
+++RS S S S S S S + R + + + R + + R + K+ K +
Sbjct: 153 KKSRSRSRERKKSRSRSRERKRRIRSRSRSRSRHRHRTRSRSRTRSRSRDRKKRIEKPRR 212
Query: 245 EAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSI 298
++ + P P + +A + ++ E+ ++Q + E +Q I
Sbjct: 213 FSRSLSRTPSPPPFRGRNTAMDAQEALARRLERAKKLQEQREKEMVEKQKQQEI 266
Score = 46.6 bits (109), Expect = 3e-05
Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 18/145 (12%)
Query: 119 RARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEER 178
R+R SR+R +SRSRSR E++K +SR SR S S+ R+ + R
Sbjct: 129 RSRERRHRSRSRERKKSRSRSR----ERKKSRSR---SRERKKSRSRSRERKRRIRSRSR 181
Query: 179 SKQKARRRTRSSSSSSSSSSSS----------SSSSSSSSSSSSSDGRKKRGKYKDKRRK 228
S+ + R RTRS S + S S S S S + S GR ++ +
Sbjct: 182 SRSRHRHRTRSRSRTRSRSRDRKKRIEKPRRFSRSLSRTPSPPPFRGRNTAMDAQEALAR 241
Query: 229 KKKKRKKL-KKKGKEKAEAQQVEAL 252
+ ++ KKL +++ KE E Q+ + +
Sbjct: 242 RLERAKKLQEQREKEMVEKQKQQEI 266
Score = 37.7 bits (86), Expect = 0.016
Identities = 31/167 (18%), Positives = 61/167 (36%)
Query: 145 EKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSS 204
++ KKK + + S + AS ++ + +R R+ RS S S S
Sbjct: 19 DRDKKKEQSEVSVSPRASKHHYSRSRSRSRERKRKSDNEGRKHRSRSRSKEGRRHESKDK 78
Query: 205 SSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSA 264
SS S K+ K + R + + + K KE+ ++ S ++ HRS
Sbjct: 79 SSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRERRHRSR 138
Query: 265 GEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTR 311
E ++ + ++ K+ + R++ R+R
Sbjct: 139 SRERKKSRSRSRERKKSRSRSRERKKSRSRSRERKRRIRSRSRSRSR 185
Score = 35.0 bits (79), Expect = 0.10
Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 20/149 (13%)
Query: 87 RPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEK 146
R SR+ R ++ S +K+R + R+R R RSRSRSR R R +
Sbjct: 134 RHRSRSRERKKSRSRSRERKKSRSRSRERKKSRSRSRERKRRIRSRSRSRSRHRHRTRSR 193
Query: 147 RKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSS 206
+ +SR S+ RK + +K RR +RS S + S +++
Sbjct: 194 SRTRSR-----------SRDRK---------KRIEKPRRFSRSLSRTPSPPPFRGRNTAM 233
Query: 207 SSSSSSSDGRKKRGKYKDKRRKKKKKRKK 235
+ + + ++ K +++R K+ +++K
Sbjct: 234 DAQEALARRLERAKKLQEQREKEMVEKQK 262
Score = 30.0 bits (66), Expect = 3.3
Identities = 30/109 (27%), Positives = 41/109 (37%), Gaps = 9/109 (8%)
Query: 86 SRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRG-- 143
SR R R + ++R R R SR RSR R R+R R
Sbjct: 137 SRSRERKKSRSRSRERKKSRSRSRERKKSRSRSRERKRRIRSRSRSRSRHRHRTRSRSRT 196
Query: 144 -SEKRKKKSRKDTSRNCSASTSQG------RKASTAPGAEERSKQKARR 185
S R +K R + R S S S+ R +TA A+E ++ R
Sbjct: 197 RSRSRDRKKRIEKPRRFSRSLSRTPSPPPFRGRNTAMDAQEALARRLER 245
>gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]
Length = 344
Score = 66.6 bits (161), Expect = 3e-11
Identities = 43/111 (38%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
Query: 125 AHVGSRKRSRSRSRSRGRGSEKRKKKSRK-DTSRNCSASTSQGRKASTAPGAEERSKQKA 183
++ GSR RSRSR RSR R + +SR SR+ S S S+GR S + G + RSK K+
Sbjct: 190 SYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRSKSKS 249
Query: 184 RRRT-RSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKR 233
+ ++ R S S S S S S S S S S +G K K R + + R
Sbjct: 250 KPKSDRGSHSHSRSRSKDEYEKSRSRSRSRSPKENGKGDIKSKSRSRSQSR 300
Score = 60.8 bits (146), Expect = 2e-09
Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 125 AHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKAR 184
+H S SRSRSRSR R S R ++S + SR+ S S S+ R S + + ++R
Sbjct: 186 SHRRSYSGSRSRSRSR-RRSRSRSRRSSRSRSRSISKSRSRSRSRS-------KGRSRSR 237
Query: 185 RRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKA 244
+ R S S S S S S S S S S D +K R K+ + +K K + ++
Sbjct: 238 SKGRKSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSRSPKENGKGDIKSKSRSRS 297
Query: 245 EAQQVEALPGP 255
+++ LP P
Sbjct: 298 QSRSNSPLPVP 308
Score = 52.8 bits (125), Expect = 5e-07
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTR 188
S+ RSRSRSRS+GR + K + + S++ S S + +E K ++R R+R
Sbjct: 220 SKSRSRSRSRSKGRSRSRSKGRKSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSR 279
Query: 189 SSSSSSSSSSSSSSSSSSSSSSSS------SDGRK-----KRGKYKDKRRKKKKKRKKLK 237
S + S S S S S S+S S R KR + + R + K R + +
Sbjct: 280 SPKENGKGDIKSKSRSRSQSRSNSPLPVPPSKARSVSPPPKRATSRSRSRSRSKSRSRSR 339
Query: 238 KKGKE 242
++
Sbjct: 340 SSSRD 344
Score = 52.0 bits (123), Expect = 8e-07
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 141 GRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSS 200
GR + K R R+ S S S+ R + RS+ ++RR +RS S S S S S
Sbjct: 173 GRNIRLIEDKPRTSHRRSYSGSRSRSR-------SRRRSRSRSRRSSRSRSRSISKSRSR 225
Query: 201 SSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAE 245
S S S S S S GRK R K K K + + + + K++ E
Sbjct: 226 SRSRSKGRSRSRSKGRKSRSKSKSKPKSDRGSHSHSRSRSKDEYE 270
Score = 50.1 bits (118), Expect = 3e-06
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 4/155 (2%)
Query: 79 GSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSR 138
GS + SR SR+ R + S + K+R GR+R SR +S+S+ +
Sbjct: 193 GSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRSKSKSKPK 252
Query: 139 SRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSS 198
S RGS + KD S S+ R S + K K+R R++S S+S
Sbjct: 253 S-DRGSHSHSRSRSKD---EYEKSRSRSRSRSPKENGKGDIKSKSRSRSQSRSNSPLPVP 308
Query: 199 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKR 233
S + S S ++ + R + K + R + R
Sbjct: 309 PSKARSVSPPPKRATSRSRSRSRSKSRSRSRSSSR 343
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 65.9 bits (159), Expect = 5e-11
Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 8/120 (6%)
Query: 129 SRKRSRSRSRSRGRGSEKRKK-----KSRKDTSRNCSASTSQGRKASTAPGAEERSKQKA 183
S ++S+ RS+ +G E +K K+RK S + +S+++ R +ST+ S +
Sbjct: 35 SDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSS 94
Query: 184 RRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 243
+ SSSSS+SS S SSS+S SSSSSSSS + D RR+ + K K K+ KE+
Sbjct: 95 ---SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151
Score = 64.3 bits (155), Expect = 2e-10
Identities = 36/108 (33%), Positives = 60/108 (55%)
Query: 128 GSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRT 187
G+ K S + R R + ++R S ++R+ S+STS +++ + S A R+
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
Query: 188 RSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 235
SSS+S SSSSSSSS S S S + R+ R K K +R +K+++++
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Score = 62.4 bits (150), Expect = 6e-10
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 3/158 (1%)
Query: 107 KARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEK--RKKKSRKDTSRNCSASTS 164
K + L + + A ++++ RS +S+ R +K K+ S KD R+ +
Sbjct: 7 KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRR 66
Query: 165 QGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGK-YK 223
S++ + S + T + SSS SSSSS+SS S SSS+S SS G
Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
Query: 224 DKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWH 261
+RR ++R + K K ++ E ++ P P + H
Sbjct: 127 SRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVH 164
Score = 32.7 bits (73), Expect = 0.50
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
AS+G R + + GS + S S ++ ASS +R S G
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
+ +R+RSRS+S+ R ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 65.9 bits (159), Expect = 5e-11
Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 8/120 (6%)
Query: 129 SRKRSRSRSRSRGRGSEKRKK-----KSRKDTSRNCSASTSQGRKASTAPGAEERSKQKA 183
S ++S+ RS+ +G E +K K+RK S + +S+++ R +ST+ S +
Sbjct: 35 SDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSS 94
Query: 184 RRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 243
+ SSSSS+SS S SSS+S SSSSSSSS + D RR+ + K K K+ KE+
Sbjct: 95 ---SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151
Score = 64.3 bits (155), Expect = 2e-10
Identities = 36/108 (33%), Positives = 60/108 (55%)
Query: 128 GSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRT 187
G+ K S + R R + ++R S ++R+ S+STS +++ + S A R+
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
Query: 188 RSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 235
SSS+S SSSSSSSS S S S + R+ R K K +R +K+++++
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Score = 62.4 bits (150), Expect = 6e-10
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 3/158 (1%)
Query: 107 KARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEK--RKKKSRKDTSRNCSASTS 164
K + L + + A ++++ RS +S+ R +K K+ S KD R+ +
Sbjct: 7 KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRR 66
Query: 165 QGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGK-YK 223
S++ + S + T + SSS SSSSS+SS S SSS+S SS G
Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
Query: 224 DKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWH 261
+RR ++R + K K ++ E ++ P P + H
Sbjct: 127 SRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVH 164
Score = 32.7 bits (73), Expect = 0.50
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
AS+G R + + GS + S S ++ ASS +R S G
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
+ +R+RSRS+S+ R ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 65.9 bits (159), Expect = 5e-11
Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 8/120 (6%)
Query: 129 SRKRSRSRSRSRGRGSEKRKK-----KSRKDTSRNCSASTSQGRKASTAPGAEERSKQKA 183
S ++S+ RS+ +G E +K K+RK S + +S+++ R +ST+ S +
Sbjct: 35 SDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSS 94
Query: 184 RRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 243
+ SSSSS+SS S SSS+S SSSSSSSS + D RR+ + K K K+ KE+
Sbjct: 95 ---SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151
Score = 64.3 bits (155), Expect = 2e-10
Identities = 36/108 (33%), Positives = 60/108 (55%)
Query: 128 GSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRT 187
G+ K S + R R + ++R S ++R+ S+STS +++ + S A R+
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
Query: 188 RSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 235
SSS+S SSSSSSSS S S S + R+ R K K +R +K+++++
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Score = 62.4 bits (150), Expect = 6e-10
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 3/158 (1%)
Query: 107 KARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEK--RKKKSRKDTSRNCSASTS 164
K + L + + A ++++ RS +S+ R +K K+ S KD R+ +
Sbjct: 7 KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRR 66
Query: 165 QGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGK-YK 223
S++ + S + T + SSS SSSSS+SS S SSS+S SS G
Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
Query: 224 DKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWH 261
+RR ++R + K K ++ E ++ P P + H
Sbjct: 127 SRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVH 164
Score = 32.7 bits (73), Expect = 0.50
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
AS+G R + + GS + S S ++ ASS +R S G
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
+ +R+RSRS+S+ R ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 65.9 bits (159), Expect = 5e-11
Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 8/120 (6%)
Query: 129 SRKRSRSRSRSRGRGSEKRKK-----KSRKDTSRNCSASTSQGRKASTAPGAEERSKQKA 183
S ++S+ RS+ +G E +K K+RK S + +S+++ R +ST+ S +
Sbjct: 35 SDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSS 94
Query: 184 RRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 243
+ SSSSS+SS S SSS+S SSSSSSSS + D RR+ + K K K+ KE+
Sbjct: 95 ---SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151
Score = 64.3 bits (155), Expect = 2e-10
Identities = 36/108 (33%), Positives = 60/108 (55%)
Query: 128 GSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRT 187
G+ K S + R R + ++R S ++R+ S+STS +++ + S A R+
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
Query: 188 RSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 235
SSS+S SSSSSSSS S S S + R+ R K K +R +K+++++
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Score = 62.4 bits (150), Expect = 6e-10
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 3/158 (1%)
Query: 107 KARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEK--RKKKSRKDTSRNCSASTS 164
K + L + + A ++++ RS +S+ R +K K+ S KD R+ +
Sbjct: 7 KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRR 66
Query: 165 QGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGK-YK 223
S++ + S + T + SSS SSSSS+SS S SSS+S SS G
Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
Query: 224 DKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWH 261
+RR ++R + K K ++ E ++ P P + H
Sbjct: 127 SRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVH 164
Score = 32.7 bits (73), Expect = 0.50
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
AS+G R + + GS + S S ++ ASS +R S G
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
+ +R+RSRS+S+ R ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 65.5 bits (158), Expect = 7e-11
Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 8/120 (6%)
Query: 129 SRKRSRSRSRSRGRGSEKRKK-----KSRKDTSRNCSASTSQGRKASTAPGAEERSKQKA 183
S ++S+ RS+ +G E +K K+RK S + +S+++ R +ST+ S +
Sbjct: 35 SDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSS 94
Query: 184 RRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 243
+ SSSSS+SS S SSS+S SSSSSSSS + D RR+ + K K K+ KE+
Sbjct: 95 ---SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151
Score = 62.4 bits (150), Expect = 6e-10
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 3/158 (1%)
Query: 107 KARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEK--RKKKSRKDTSRNCSASTS 164
K + L + + A ++++ RS +S+ R +K K+ S KD R+ +
Sbjct: 7 KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRH 66
Query: 165 QGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGK-YK 223
S++ + S + T + SSS SSSSS+SS S SSS+S SS G
Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
Query: 224 DKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWH 261
+RR ++R + K K ++ E ++ P P + H
Sbjct: 127 SRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVH 164
Score = 32.7 bits (73), Expect = 0.50
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
AS+G R + + GS + S S ++ ASS +R S G
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
+ +R+RSRS+S+ R ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 65.5 bits (158), Expect = 7e-11
Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 8/120 (6%)
Query: 129 SRKRSRSRSRSRGRGSEKRKK-----KSRKDTSRNCSASTSQGRKASTAPGAEERSKQKA 183
S ++S+ RS+ +G E +K K+RK S + +S+++ R +ST+ S +
Sbjct: 35 SDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSS 94
Query: 184 RRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 243
+ SSSSS+SS S SSS+S SSSSSSSS + D RR+ + K K K+ KE+
Sbjct: 95 ---SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151
Score = 62.4 bits (150), Expect = 6e-10
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 3/158 (1%)
Query: 107 KARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEK--RKKKSRKDTSRNCSASTS 164
K + L + + A ++++ RS +S+ R +K K+ S KD R+ +
Sbjct: 7 KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRH 66
Query: 165 QGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGK-YK 223
S++ + S + T + SSS SSSSS+SS S SSS+S SS G
Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
Query: 224 DKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWH 261
+RR ++R + K K ++ E ++ P P + H
Sbjct: 127 SRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVH 164
Score = 32.7 bits (73), Expect = 0.50
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
AS+G R + + GS + S S ++ ASS +R S G
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
+ +R+RSRS+S+ R ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 65.5 bits (158), Expect = 7e-11
Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 8/120 (6%)
Query: 129 SRKRSRSRSRSRGRGSEKRKK-----KSRKDTSRNCSASTSQGRKASTAPGAEERSKQKA 183
S ++S+ RS+ +G E +K K+RK S + +S+++ R +ST+ S +
Sbjct: 35 SDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSS 94
Query: 184 RRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 243
+ SSSSS+SS S SSS+S SSSSSSSS + D RR+ + K K K+ KE+
Sbjct: 95 ---SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151
Score = 62.4 bits (150), Expect = 6e-10
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 3/158 (1%)
Query: 107 KARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEK--RKKKSRKDTSRNCSASTS 164
K + L + + A ++++ RS +S+ R +K K+ S KD R+ +
Sbjct: 7 KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRH 66
Query: 165 QGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGK-YK 223
S++ + S + T + SSS SSSSS+SS S SSS+S SS G
Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
Query: 224 DKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWH 261
+RR ++R + K K ++ E ++ P P + H
Sbjct: 127 SRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVH 164
Score = 32.7 bits (73), Expect = 0.50
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
AS+G R + + GS + S S ++ ASS +R S G
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
+ +R+RSRS+S+ R ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 3 [Homo sapiens]
Length = 305
Score = 65.5 bits (158), Expect = 7e-11
Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 8/120 (6%)
Query: 129 SRKRSRSRSRSRGRGSEKRKK-----KSRKDTSRNCSASTSQGRKASTAPGAEERSKQKA 183
S ++S+ RS+ +G E +K K+RK S + +S+++ R +ST+ S +
Sbjct: 35 SDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSS 94
Query: 184 RRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 243
+ SSSSS+SS S SSS+S SSSSSSSS + D RR+ + K K K+ KE+
Sbjct: 95 ---SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151
Score = 62.4 bits (150), Expect = 6e-10
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 3/158 (1%)
Query: 107 KARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEK--RKKKSRKDTSRNCSASTS 164
K + L + + A ++++ RS +S+ R +K K+ S KD R+ +
Sbjct: 7 KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRH 66
Query: 165 QGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGK-YK 223
S++ + S + T + SSS SSSSS+SS S SSS+S SS G
Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
Query: 224 DKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWH 261
+RR ++R + K K ++ E ++ P P + H
Sbjct: 127 SRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVH 164
Score = 32.7 bits (73), Expect = 0.50
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
AS+G R + + GS + S S ++ ASS +R S G
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
+ +R+RSRS+S+ R ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
[Homo sapiens]
Length = 624
Score = 65.1 bits (157), Expect = 9e-11
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 20/158 (12%)
Query: 105 LEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTS 164
+E G + +GGR+R S RS+SRS S+ KR + + S N S S
Sbjct: 293 IEPESGKSNERKGGRSR-------SHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQ 345
Query: 165 QGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKR----- 219
+ R+ S +P ++RSK + RR++RS S S + D K+R
Sbjct: 346 KDRRRSKSPH-KKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKE 404
Query: 220 -------GKYKDKRRKKKKKRKKLKKKGKEKAEAQQVE 250
GK KD+ ++++K R+K K+K +E+ ++ E
Sbjct: 405 REKEKERGKNKDRDKEREKDREKDKEKDREREREKEHE 442
Score = 54.7 bits (130), Expect = 1e-07
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 20/173 (11%)
Query: 130 RKRSRSRSRSRGRGSEKRK-----KKSRKDTSRNCSASTSQGRKASTAPGA-------EE 177
R+R R + + R EK K K+ KD S+ + +K+ T P +
Sbjct: 433 REREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRS 492
Query: 178 RSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGR-KKRGKYKD--KRRKKKKKRK 234
S+++ RRR+RSSS S +S + SS S S S + + KKR K +D R+++++
Sbjct: 493 SSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRERERST 552
Query: 235 KLKKK-----GKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQ 282
++K GKEK E + S +E D ++++IQ
Sbjct: 553 SMRKSSNDRDGKEKLEKNSTSLKEKEHNKEPDSSVSKEVDDKDAPRTEENKIQ 605
Score = 51.2 bits (121), Expect = 1e-06
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTR 188
+R RSR + R R + K++ KSR + ++ S S S+ ++ T +E+ + K + R +
Sbjct: 339 NRSRSRQKDRRRSKSPHKKRSKSR-ERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREK 397
Query: 189 SSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQ 248
+ R+K K KD+ R+++K+ +K + K KEK + ++
Sbjct: 398 EREREKEREKEKERGKNKDRDKEREKDREK-DKEKDREREREKEHEKDRDKEKEKEQDKE 456
Query: 249 VE 250
E
Sbjct: 457 KE 458
Score = 50.4 bits (119), Expect = 2e-06
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 130 RKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRS 189
R+RS+S + R + E+RK +SR SR+ T + K ++R K++ R + R
Sbjct: 348 RRRSKSPHKKRSKSRERRKSRSRSH-SRDKRKDTREKIKEKERVKEKDREKEREREKERE 406
Query: 190 SSSS-SSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQ 248
+ D ++R K +K R K+K++++ K+K +EK +++
Sbjct: 407 KEKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKE 466
Query: 249 VE 250
++
Sbjct: 467 ID 468
Score = 50.1 bits (118), Expect = 3e-06
Identities = 51/227 (22%), Positives = 89/227 (39%), Gaps = 19/227 (8%)
Query: 65 GGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAM 124
GGR+R T +++ S + R S++ R + + +K R P R++
Sbjct: 305 GGRSRSHTRS-KSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSK--- 360
Query: 125 AHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKAR 184
SR+R +SRSRS R K ++ K+ R + R+ +ER K+K R
Sbjct: 361 ----SRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKERERE-----KEREKEKER 411
Query: 185 RRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKG-KEK 243
+ + + K R K K+K + K+K+R+K + K EK
Sbjct: 412 GKNK-DRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEK 470
Query: 244 AEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKE 290
+ + P S + RS + ++SR + P T +
Sbjct: 471 RKKDKKSRTPPRSYNASRRSRSSSRE----RRRRRSRSSSRSPRTSK 513
Score = 44.7 bits (104), Expect = 1e-04
Identities = 45/190 (23%), Positives = 76/190 (40%), Gaps = 22/190 (11%)
Query: 130 RKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRS 189
+ R + + + R R EK +K R + K + E+R K K R
Sbjct: 423 KDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPR 482
Query: 190 SSSSSSSSSSSS---------SSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKG 240
S ++S S SSS SSS S +S + + R R KK KKR+K +
Sbjct: 483 SYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHI 542
Query: 241 KEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIR 300
E+ E ++ ++ R + + DG ++ + ++ K KE S+ +
Sbjct: 543 SERRERERSTSM---------RKSSNDRDGKEKLEKNSTSLKE-KEHNKE---PDSSVSK 589
Query: 301 KVVDPETGRT 310
+V D + RT
Sbjct: 590 EVDDKDAPRT 599
Score = 43.9 bits (102), Expect = 2e-04
Identities = 29/114 (25%), Positives = 50/114 (43%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTR 188
SR RS + SR S R+++ R+ S + S TS+ K ++ RS+ K ++
Sbjct: 477 SRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKRE 536
Query: 189 SSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKE 242
S S+S SS+ DG++K K ++K+ ++ KE
Sbjct: 537 KERDHISERRERERSTSMRKSSNDRDGKEKLEKNSTSLKEKEHNKEPDSSVSKE 590
Score = 43.5 bits (101), Expect = 3e-04
Identities = 26/99 (26%), Positives = 47/99 (47%)
Query: 145 EKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSS 204
E+ K+ R+ S +A + K++ G RS +++ R+ S S S S S S
Sbjct: 276 EEVMKRVREAQSFISAAIEPESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRS 335
Query: 205 SSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 243
S + S S ++R K K+R K ++R+K + + +
Sbjct: 336 RSHNRSRSRQKDRRRSKSPHKKRSKSRERRKSRSRSHSR 374
Score = 42.4 bits (98), Expect = 6e-04
Identities = 42/217 (19%), Positives = 84/217 (38%), Gaps = 26/217 (11%)
Query: 130 RKRSRSRSRSRGRGSEK-RKKKSRKDTSRNCSASTSQGR-----KASTAPGAEERSKQKA 183
R+R + R + + RG K R K+ KD ++ + R K +E+ K+K
Sbjct: 399 REREKEREKEKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKE 458
Query: 184 RRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 243
R + RS S + S ++S +R + + R++++ R + K
Sbjct: 459 REKDRSKEIDEKRKKDKKSRTPPRSYNAS-----RRSRSSSRERRRRRSRSSSRSPRTSK 513
Query: 244 AEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVV 303
++ P P RS +++ K R + +++ R + +RK
Sbjct: 514 TIKRKSSRSPSP------RSRNKKD---------KKREKERDHISERRERERSTSMRKSS 558
Query: 304 DPETGRTRLIKGDGEVLEEIVTKERHREINKQATRGD 340
+ G+ +L K + E+ KE ++K+ D
Sbjct: 559 NDRDGKEKLEKNSTSLKEKEHNKEPDSSVSKEVDDKD 595
Score = 37.7 bits (86), Expect = 0.016
Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 12/172 (6%)
Query: 175 AEERSKQKARRRTRSSSSSSSSSSSSSSSSS------SSSSSSSSDGRKKRGKYKDKRRK 228
A E K+ R S S + S S SSS S S S S + R + KD+RR
Sbjct: 292 AIEPESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRS 351
Query: 229 KK--KKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKP 286
K KKR K +++ K ++ + + + +E+D + +K R + +
Sbjct: 352 KSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKEREKEKER 411
Query: 287 MTKEEWDARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATR 338
++ D + R+ D E R R + + E + KE+ +E +K+ R
Sbjct: 412 GKNKDRDKEREKDRE-KDKEKDREREREKEHEKDRD---KEKEKEQDKEKER 459
Score = 35.8 bits (81), Expect = 0.059
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
Query: 130 RKRSRSRSRSRG-RGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTR 188
R+R RSRS SR R S+ K+KS + S + R+ +E R ++++ +
Sbjct: 497 RRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTSMRK 556
Query: 189 SSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKG 240
SS+ +S+S + + K D + + + K++ G
Sbjct: 557 SSNDRDGKEKLEKNSTSLKEKEHNKEPDSSVSKEVDDKDAPRTEENKIQHNG 608
>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
[Homo sapiens]
Length = 508
Score = 65.1 bits (157), Expect = 9e-11
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 20/158 (12%)
Query: 105 LEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTS 164
+E G + +GGR+R S RS+SRS S+ KR + + S N S S
Sbjct: 177 IEPESGKSNERKGGRSR-------SHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQ 229
Query: 165 QGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKR----- 219
+ R+ S +P ++RSK + RR++RS S S + D K+R
Sbjct: 230 KDRRRSKSPH-KKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKE 288
Query: 220 -------GKYKDKRRKKKKKRKKLKKKGKEKAEAQQVE 250
GK KD+ ++++K R+K K+K +E+ ++ E
Sbjct: 289 REKEKERGKNKDRDKEREKDREKDKEKDREREREKEHE 326
Score = 54.7 bits (130), Expect = 1e-07
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 20/173 (11%)
Query: 130 RKRSRSRSRSRGRGSEKRK-----KKSRKDTSRNCSASTSQGRKASTAPGA-------EE 177
R+R R + + R EK K K+ KD S+ + +K+ T P +
Sbjct: 317 REREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRS 376
Query: 178 RSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGR-KKRGKYKD--KRRKKKKKRK 234
S+++ RRR+RSSS S +S + SS S S S + + KKR K +D R+++++
Sbjct: 377 SSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRERERST 436
Query: 235 KLKKK-----GKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQ 282
++K GKEK E + S +E D ++++IQ
Sbjct: 437 SMRKSSNDRDGKEKLEKNSTSLKEKEHNKEPDSSVSKEVDDKDAPRTEENKIQ 489
Score = 51.2 bits (121), Expect = 1e-06
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTR 188
+R RSR + R R + K++ KSR + ++ S S S+ ++ T +E+ + K + R +
Sbjct: 223 NRSRSRQKDRRRSKSPHKKRSKSR-ERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREK 281
Query: 189 SSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQ 248
+ R+K K KD+ R+++K+ +K + K KEK + ++
Sbjct: 282 EREREKEREKEKERGKNKDRDKEREKDREK-DKEKDREREREKEHEKDRDKEKEKEQDKE 340
Query: 249 VE 250
E
Sbjct: 341 KE 342
Score = 50.4 bits (119), Expect = 2e-06
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 130 RKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRS 189
R+RS+S + R + E+RK +SR SR+ T + K ++R K++ R + R
Sbjct: 232 RRRSKSPHKKRSKSRERRKSRSRSH-SRDKRKDTREKIKEKERVKEKDREKEREREKERE 290
Query: 190 SSSS-SSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQ 248
+ D ++R K +K R K+K++++ K+K +EK +++
Sbjct: 291 KEKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKE 350
Query: 249 VE 250
++
Sbjct: 351 ID 352
Score = 50.1 bits (118), Expect = 3e-06
Identities = 51/227 (22%), Positives = 89/227 (39%), Gaps = 19/227 (8%)
Query: 65 GGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAM 124
GGR+R T +++ S + R S++ R + + +K R P R++
Sbjct: 189 GGRSRSHTRS-KSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSK--- 244
Query: 125 AHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKAR 184
SR+R +SRSRS R K ++ K+ R + R+ +ER K+K R
Sbjct: 245 ----SRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKERERE-----KEREKEKER 295
Query: 185 RRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKG-KEK 243
+ + + K R K K+K + K+K+R+K + K EK
Sbjct: 296 GKNK-DRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEK 354
Query: 244 AEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKE 290
+ + P S + RS + ++SR + P T +
Sbjct: 355 RKKDKKSRTPPRSYNASRRSRSSSRE----RRRRRSRSSSRSPRTSK 397
Score = 44.7 bits (104), Expect = 1e-04
Identities = 45/190 (23%), Positives = 76/190 (40%), Gaps = 22/190 (11%)
Query: 130 RKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRS 189
+ R + + + R R EK +K R + K + E+R K K R
Sbjct: 307 KDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPR 366
Query: 190 SSSSSSSSSSSS---------SSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKG 240
S ++S S SSS SSS S +S + + R R KK KKR+K +
Sbjct: 367 SYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHI 426
Query: 241 KEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIR 300
E+ E ++ ++ R + + DG ++ + ++ K KE S+ +
Sbjct: 427 SERRERERSTSM---------RKSSNDRDGKEKLEKNSTSLKE-KEHNKE---PDSSVSK 473
Query: 301 KVVDPETGRT 310
+V D + RT
Sbjct: 474 EVDDKDAPRT 483
Score = 43.9 bits (102), Expect = 2e-04
Identities = 29/114 (25%), Positives = 50/114 (43%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTR 188
SR RS + SR S R+++ R+ S + S TS+ K ++ RS+ K ++
Sbjct: 361 SRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKRE 420
Query: 189 SSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKE 242
S S+S SS+ DG++K K ++K+ ++ KE
Sbjct: 421 KERDHISERRERERSTSMRKSSNDRDGKEKLEKNSTSLKEKEHNKEPDSSVSKE 474
Score = 43.5 bits (101), Expect = 3e-04
Identities = 26/99 (26%), Positives = 47/99 (47%)
Query: 145 EKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSS 204
E+ K+ R+ S +A + K++ G RS +++ R+ S S S S S S
Sbjct: 160 EEVMKRVREAQSFISAAIEPESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRS 219
Query: 205 SSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 243
S + S S ++R K K+R K ++R+K + + +
Sbjct: 220 RSHNRSRSRQKDRRRSKSPHKKRSKSRERRKSRSRSHSR 258
Score = 42.4 bits (98), Expect = 6e-04
Identities = 42/217 (19%), Positives = 84/217 (38%), Gaps = 26/217 (11%)
Query: 130 RKRSRSRSRSRGRGSEK-RKKKSRKDTSRNCSASTSQGR-----KASTAPGAEERSKQKA 183
R+R + R + + RG K R K+ KD ++ + R K +E+ K+K
Sbjct: 283 REREKEREKEKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKE 342
Query: 184 RRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 243
R + RS S + S ++S +R + + R++++ R + K
Sbjct: 343 REKDRSKEIDEKRKKDKKSRTPPRSYNAS-----RRSRSSSRERRRRRSRSSSRSPRTSK 397
Query: 244 AEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVV 303
++ P P RS +++ K R + +++ R + +RK
Sbjct: 398 TIKRKSSRSPSP------RSRNKKD---------KKREKERDHISERRERERSTSMRKSS 442
Query: 304 DPETGRTRLIKGDGEVLEEIVTKERHREINKQATRGD 340
+ G+ +L K + E+ KE ++K+ D
Sbjct: 443 NDRDGKEKLEKNSTSLKEKEHNKEPDSSVSKEVDDKD 479
Score = 37.7 bits (86), Expect = 0.016
Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 12/172 (6%)
Query: 175 AEERSKQKARRRTRSSSSSSSSSSSSSSSSS------SSSSSSSSDGRKKRGKYKDKRRK 228
A E K+ R S S + S S SSS S S S S + R + KD+RR
Sbjct: 176 AIEPESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRS 235
Query: 229 KK--KKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKP 286
K KKR K +++ K ++ + + + +E+D + +K R + +
Sbjct: 236 KSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKEREKEKER 295
Query: 287 MTKEEWDARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATR 338
++ D + R+ D E R R + + E + KE+ +E +K+ R
Sbjct: 296 GKNKDRDKEREKDRE-KDKEKDREREREKEHEKDRD---KEKEKEQDKEKER 343
Score = 35.8 bits (81), Expect = 0.059
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
Query: 130 RKRSRSRSRSRG-RGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTR 188
R+R RSRS SR R S+ K+KS + S + R+ +E R ++++ +
Sbjct: 381 RRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTSMRK 440
Query: 189 SSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKG 240
SS+ +S+S + + K D + + + K++ G
Sbjct: 441 SSNDRDGKEKLEKNSTSLKEKEHNKEPDSSVSKEVDDKDAPRTEENKIQHNG 492
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 64.7 bits (156), Expect = 1e-10
Identities = 54/175 (30%), Positives = 77/175 (44%), Gaps = 7/175 (4%)
Query: 80 SGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRS 139
S A PS P AP S P + P+ + +M RS S S
Sbjct: 1360 SEQADPSAPC--LAPSSLLSPEASPCRNDMNTRTPPEPSAKQRSMRCYRKACRSASPSSQ 1417
Query: 140 RGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSSS--- 196
+G R +S S S ++S +S++ + RS +R R SS SSS
Sbjct: 1418 GWQGRRGRNSRSVSSGSNRTSEASSSSSSSSSSSRSRSRSLSPPHKRWRRSSCSSSGRSR 1477
Query: 197 --SSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQV 249
SSSSSSSSSSSSSSSSS + R + RR+ ++R+ + + + Q+V
Sbjct: 1478 RCSSSSSSSSSSSSSSSSSSSSRSRSRSPSPRRRSDRRRRYSSYRSHDHYQRQRV 1532
>gi|168229156 NFKB activating protein [Homo sapiens]
Length = 415
Score = 64.3 bits (155), Expect = 2e-10
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 15/166 (9%)
Query: 160 SASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKR 219
SASTS+ K + ++ERSK+ RR+ +SS S S S S S + SS + K+R
Sbjct: 174 SASTSEEEKKKKSSRSKERSKK--RRKKKSSKRKHKKYSEDSDSDSDSETDSSDEDNKRR 231
Query: 220 GKYKDKRRKKKKKR-KKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQK 278
K K+ KKKK R KK KKK +K+ + + S+ +E L + K
Sbjct: 232 AKKAKKKEKKKKHRSKKYKKKRSKKSRKESSD------------SSSKESQEEFLENPWK 279
Query: 279 SRIQAMKPMTKEEWDARQSIIRKVVDPETGRTRLIKGDGEVLEEIV 324
R +A +P +A +++ + P L+ G+G + E V
Sbjct: 280 DRTKAEEPSDLIGPEAPKTLTSQDDKPLNYGHALLPGEGAAMAEYV 325
Score = 52.8 bits (125), Expect = 5e-07
Identities = 56/215 (26%), Positives = 90/215 (41%), Gaps = 31/215 (14%)
Query: 57 APLLASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEAS-SPPLPLEKARGGLSGP 115
AP+ S R G+ G R S + PS+ A +PR S S R GL+
Sbjct: 2 APVSGSRSPDREASGSGGRRRSSSKSPKPSKSAR--SPRGRRSRSHSCSRSGDRNGLTHQ 59
Query: 116 QGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTA-PG 174
GG ++G+ RSRSRSRSR R S R +S S S+ + P
Sbjct: 60 LGGLSQGSR---NQSYRSRSRSRSRERPSAPRGIPFASASSSVYYGSYSRPYGSDKPWPS 116
Query: 175 AEERSKQKARRRTRSS------------------------SSSSSSSSSSSSSSSSSSSS 210
++ ++++ R+ R S S + S++S+S
Sbjct: 117 LLDKEREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDEEPKKSTTSAS 176
Query: 211 SSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAE 245
+S + +KK+ +R KK++K+K K+K K+ +E
Sbjct: 177 TSEEEKKKKSSRSKERSKKRRKKKSSKRKHKKYSE 211
Score = 43.5 bits (101), Expect = 3e-04
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 94 PRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRK 153
P P+ S P+E S + SR + RS+ R + + S+++ KK +
Sbjct: 153 PEPD-SDEHTPVEDEEPKKSTTSASTSEEEKKKKSSRSKERSKKRRKKKSSKRKHKKYSE 211
Query: 154 DTSRNCSASTSQG-----RKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSS 206
D+ + + T R+A A E++ K ++++ + S S SS SSS S
Sbjct: 212 DSDSDSDSETDSSDEDNKRRAKKAKKKEKKKKHRSKKYKKKRSKKSRKESSDSSSKES 269
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 64.3 bits (155), Expect = 2e-10
Identities = 69/223 (30%), Positives = 95/223 (42%), Gaps = 15/223 (6%)
Query: 2 ERA-GPAGEEGGAREGRLLPRA---PGAWVLRACAERAALEVGAASADTGVRGCGARGPA 57
ERA P+ G A LLP A P + V A ++++ + + G + + A
Sbjct: 2422 ERAPSPSSRMGQAPSQSLLPPAQDQPRSPVPSAFSDQSRCLIAQTTPVAGSQSLSSGAVA 2481
Query: 58 PLLASAGGGRARDGTWGVRTKG-SGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQ 116
+SAG +G V G + + PAS A +P A + P ++ R S
Sbjct: 2482 TTTSSAGD---HNGMLSVPAPGVPHSDVGEPPASTGAQQPSALAALQPAKERRSSSSSSS 2538
Query: 117 GGRARGAMAHVGSRKRSRSRSRSRGRGS------EKRKKKSRKDTSRNCSASTSQGRKAS 170
+ + + S S S S GS E K+ T A +GR
Sbjct: 2539 SSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEA-VREGRPPE 2597
Query: 171 TAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSS 213
P +R + + SSSSSSSSSSSSSSSSSSSSSSSSS
Sbjct: 2598 PTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2640
Score = 58.2 bits (139), Expect = 1e-08
Identities = 75/304 (24%), Positives = 110/304 (36%), Gaps = 32/304 (10%)
Query: 20 PRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARDGTWGVRTKG 79
P+ PG W +R A + R RG + A GR+R T R
Sbjct: 537 PQRPG-WSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSR 595
Query: 80 SGAALPSRPASRAAPRPEASSPPLPLEKA------------------RGGLSGPQGGRAR 121
S R SR R S P + R G S + R
Sbjct: 596 SRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARR 655
Query: 122 GAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQ 181
G +R RSRSR+ R S + + ++ R+ S + +GR S + RS
Sbjct: 656 GRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHS 715
Query: 182 KARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKR-----RKKKKKRKKL 236
+ +R S SSS + S +S S S+SS + +K R + R R K K R L
Sbjct: 716 RTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLSL 775
Query: 237 KK--KGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAM-KPMTKEEWD 293
++ G Q+ + P S RS + T ++SR + P K +
Sbjct: 776 RRSLSGSSPCPKQKSQTPPRRS-----RSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTP 830
Query: 294 ARQS 297
+RQS
Sbjct: 831 SRQS 834
Score = 55.8 bits (133), Expect = 6e-08
Identities = 50/210 (23%), Positives = 87/210 (41%), Gaps = 9/210 (4%)
Query: 81 GAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSR 140
G++ + +R A +P A PP P R + +R +K+ + R R
Sbjct: 148 GSSFDPQRRAREAKQP-APEPPKPYSLVR------ESSSSRSPTPKQKKKKKKKDRGRRS 200
Query: 141 GRGSEKRKKKSRKDTSRNCSASTSQGRK-ASTAPGAEERSKQKARRRTRSSSSSSSSSSS 199
S +R++K ++ S S S+ RK S P ++ +SK K R+R+RS++ + S +
Sbjct: 201 ESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPKSRRA 260
Query: 200 SSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQ 259
S+S+ S+SSS + + R R G+ + E + PG + Q
Sbjct: 261 HRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPASGR-RGEGDAPFSEPGTTSTQ 319
Query: 260 WHRSAGEEEDGPVLTDEQKSRIQAMKPMTK 289
S P E K + + K T+
Sbjct: 320 RPSSPETATKQPSSPYEDKDKDKKEKSATR 349
Score = 55.5 bits (132), Expect = 7e-08
Identities = 57/208 (27%), Positives = 88/208 (42%), Gaps = 24/208 (11%)
Query: 54 RGPAPLLASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLS 113
R +P A G R+R T + S + P SR+A R S P + RG
Sbjct: 483 RSRSPATAKRGRSRSRTPT---KRGHSRSRSPQWRRSRSAQRWGRSRSP----QRRGRSR 535
Query: 114 GPQG------------GRARGAM---AHVGS-RKRSRSRSRSRGRGSEKRKKKSRKDTSR 157
PQ GR+R A +H S R RSRSR+ R R + + SR
Sbjct: 536 SPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSR 595
Query: 158 NCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRK 217
+ + + + R + A RS+ ARRR+R+ S S S S + S S S + R+
Sbjct: 596 SRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARR 655
Query: 218 KRGKYK-DKRRKKKKKRKKLKKKGKEKA 244
R + + RR + + R ++ G+ ++
Sbjct: 656 GRSRSRTPARRGRSRSRTPARRSGRSRS 683
Score = 54.7 bits (130), Expect = 1e-07
Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 21/196 (10%)
Query: 67 RARDGTWGVRTKGSGAALPSRPASRAAPRPEASSP-PLPLEKARGGLSGPQGGRARGAMA 125
R+R G+ AA ++ S ++P P+A +P LP G S +G G+ +
Sbjct: 1595 RSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSS 1654
Query: 126 HVGSRKRS-RSRSRSRG-RGSEKRKKKSRKDTSRNCSASTSQ----------GRKASTAP 173
S + +SR+ RG R S + K KSR R S S+ + R AS++P
Sbjct: 1655 TESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSP 1714
Query: 174 GAEERSKQKARRRTRSSSSSSSSSSSSS----SSSSSSSSSSSSDGR----KKRGKYKDK 225
R+ + RR SS + S SS S+SS + ++S GR K RG + +
Sbjct: 1715 ETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSR 1774
Query: 226 RRKKKKKRKKLKKKGK 241
R +++K + +++ +
Sbjct: 1775 SRSRREKTRTTRRRDR 1790
Score = 51.6 bits (122), Expect = 1e-06
Identities = 55/217 (25%), Positives = 82/217 (37%), Gaps = 38/217 (17%)
Query: 86 SRPASRAAPRP--------EASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRS 137
+R A + AP P E+SS P K + GR + + RK+S +
Sbjct: 157 AREAKQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKK 216
Query: 138 RSRGRG-SEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSSS 196
+ R S+KRK +S S+ S + R ST P + R +A R T + S+SSS
Sbjct: 217 KHRSESESKKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPKSR---RAHRSTSADSASSSD 273
Query: 197 SSSSSSSSSSSS---------SSSSSDGRKKRG-------------KYKDKRRKKKKKRK 234
+S S S S+++ S S + GR+ G + K+
Sbjct: 274 TSRSRSRSAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQRPSSPETATKQPSS 333
Query: 235 KLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGP 271
+ K K+K E P P S G E P
Sbjct: 334 PYEDKDKDKKEKSATRPSPSPE----RSSTGPEPPAP 366
Score = 51.6 bits (122), Expect = 1e-06
Identities = 62/265 (23%), Positives = 100/265 (37%), Gaps = 58/265 (21%)
Query: 77 TKGSGAALPSRPASRAAPRP----EASSPPLPLEKARGGLSGPQG---------GRARGA 123
TK S A S + + AP P E SS P ++ G + GR+R
Sbjct: 428 TKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSP 487
Query: 124 MAHVGSRKRSR-------SRSRS-------------RGRGSEKRKK----------KSRK 153
R RSR SRSRS R R ++R + +SR
Sbjct: 488 ATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRN 547
Query: 154 DTSRNCSASTSQGRKASTAPGAEERSKQKA-RRRTRSSSSSSSSSSSSSSSSSSSSSSSS 212
R S S +GR S +P RS+ + RR RS S + + S S + + S S
Sbjct: 548 TQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSR 607
Query: 213 SDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPV 272
+ R+ R + + R++ + R ++++ + ++ A+ RS P
Sbjct: 608 TPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPAR--------------RSGRSRSRTPA 653
Query: 273 LTDEQKSRIQAMKPMTKEEWDARQS 297
+SR A + ++ AR+S
Sbjct: 654 RRGRSRSRTPARRGRSRSRTPARRS 678
Score = 51.6 bits (122), Expect = 1e-06
Identities = 77/314 (24%), Positives = 114/314 (36%), Gaps = 44/314 (14%)
Query: 13 AREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARDGT 72
AR GR R P R R+ + + S R +R P A GR+R T
Sbjct: 610 ARRGRSRSRTPAR---RRSRTRSPVRRRSRSRSPARRSGRSRSRTP----ARRGRSRSRT 662
Query: 73 WGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKR 132
R + S + P+R + R+ R P + R P+ GR+R R
Sbjct: 663 PARRGR-SRSRTPARRSGRSRSRT-------PARRGRSRSRTPRRGRSRSRSLVRRGRSH 714
Query: 133 SRS-RSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKAS---------TAPGAEERS--- 179
SR+ + R R S +RK KSR R+ S S+ + +K+ ++P ++ +S
Sbjct: 715 SRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLS 774
Query: 180 ------------KQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRR 227
KQK++ R S S SS + S + S SSSS K++ K ++
Sbjct: 775 LRRSLSGSSPCPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQS 834
Query: 228 KKKKKRKKLKKKGKEKAEAQQVEALPG-PSLDQWHRSAGEEEDGPVLTDEQKSRIQ---A 283
K G + S+ RS E P L SR +
Sbjct: 835 HSSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSCFESSPDPELKSRTPSRHSCSGS 894
Query: 284 MKPMTKEEWDARQS 297
P K RQS
Sbjct: 895 SPPRVKSSTPPRQS 908
Score = 50.1 bits (118), Expect = 3e-06
Identities = 30/51 (58%), Positives = 37/51 (72%)
Query: 164 SQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSD 214
S G + +A A + +K++ + SSSSSSSSSSSSSSSSSSSS SSSSD
Sbjct: 2512 STGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSD 2562
Score = 49.3 bits (116), Expect = 5e-06
Identities = 60/215 (27%), Positives = 94/215 (43%), Gaps = 37/215 (17%)
Query: 47 GVRGCGARGPAPLLASAGGGRARDG------TWGVRTKGSGAALP-SRPASRAAPRPEAS 99
G G +R PA +S R R G T R++ + P R SRA+P
Sbjct: 1816 GGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRR 1875
Query: 100 SPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRS-----RSRGRGSEKRKKKSRKD 154
S ++R L + R+R + SR+RSRSR+ RSR R S +++SR
Sbjct: 1876 S------RSRTPLISRRRSRSRTSPV---SRRRSRSRTSVTRRRSRSRASPVSRRRSRSR 1926
Query: 155 T-------SRNCSASTSQGRKASTAPGAEERSKQK----ARRRTRSSSS-----SSSSSS 198
T SR+ + +T + ++ T P RS+ + RRR+RS +S S S +
Sbjct: 1927 TPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRT 1986
Query: 199 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKR 233
S + S S +S R+ R + R++ + R
Sbjct: 1987 SPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSR 2021
Score = 47.8 bits (112), Expect = 2e-05
Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 16/159 (10%)
Query: 86 SRPASRAAPRPEASSPPLPLEKARGGLSGPQ-------GGRARGAMAHVGSRKRSRSRSR 138
SR + A+ PE S P + +S P+ R R A + R RS
Sbjct: 1704 SRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSP 1763
Query: 139 S-RGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAE-ERSKQKARRRTRSSSSSSSS 196
S + RG ++ + +SR++ +R G ST+ + RS+ + RR R S S
Sbjct: 1764 SPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSR 1823
Query: 197 SSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 235
S + SS +SS R++RG+ + +K+ R +
Sbjct: 1824 SPARQESSRTSS-------RRRRGRSRTPPTSRKRSRSR 1855
Score = 45.8 bits (107), Expect = 6e-05
Identities = 60/252 (23%), Positives = 95/252 (37%), Gaps = 26/252 (10%)
Query: 83 ALPS--RPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSR 140
ALP RP SR+ PE ++ L ++ R G S + A +G R RS S
Sbjct: 1488 ALPQTPRPRSRSPSSPELNNKCLTPQRERSG-SESSVDQKTVARTPLGQRSRSGSSQELD 1546
Query: 141 GRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKAR---RRTRSSSSSSSSS 197
+ S +++S D+S + A T + + G+ K+R RR+RS SS
Sbjct: 1547 VKPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLSPRRSRSGSSPEVKD 1606
Query: 198 SSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSL 257
++ + S S SS + K R ++ R KG+ GPS
Sbjct: 1607 KPRAAPRAQSGSDSSPE-----PKAPAPRALPRRSRSGSSSKGR------------GPSP 1649
Query: 258 DQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPE-TGRTRLIKGD 316
+ + E P ++ + +P TK R+ R PE T + RL +
Sbjct: 1650 EGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRS--SPELTRKARLSRRS 1707
Query: 317 GEVLEEIVTKER 328
T+ R
Sbjct: 1708 RSASSSPETRSR 1719
Score = 44.3 bits (103), Expect = 2e-04
Identities = 47/196 (23%), Positives = 71/196 (36%), Gaps = 24/196 (12%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
+S+ + + + G++LP +P A + S P P E R G P+ A
Sbjct: 2545 SSSSSSSSSSSSGSSSSDSEGSSLPVQP--EVALKRVPSPTPAPKEAVREGRP-PEPTPA 2601
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPG------ 174
+ S S S S S S S +S + S+S+S + PG
Sbjct: 2602 KRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPK 2661
Query: 175 -AEERSKQKARRRTRSSSSSSSSSSSSSSSSSS--------------SSSSSSSDGRKKR 219
A + RR+RS S S S S S SSSS+ +R
Sbjct: 2662 PASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSSERGSRR 2721
Query: 220 GKYKDKRRKKKKKRKK 235
G+ D R K+R++
Sbjct: 2722 GQRGDSRSPSHKRRRE 2737
Score = 42.7 bits (99), Expect = 5e-04
Identities = 58/266 (21%), Positives = 105/266 (39%), Gaps = 25/266 (9%)
Query: 49 RGCGARGPAPLLASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKA 108
R P P S R R + RTK + SR +P+P +
Sbjct: 1726 RSPSVSSPEPAEKSRSSRRRRSAS-SPRTKTT-----SRRGRSPSPKPRGLQRSRSRSRR 1779
Query: 109 RGGLSGPQGGRARGAMAHVGSRKRSRSRS----RSRGRGSEKRKKKSRKDTSRNCSASTS 164
+ + R+ + + R+RSRSRS R RG + +R+++SR ++S
Sbjct: 1780 EKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSR--TSSRR 1837
Query: 165 QGRKASTAPGAEERSKQKAR----RRTRSSSSSSSSSSSSS-----SSSSSSSSSSSSDG 215
+ ++ T P + +RS+ + +R+RS +S ++ S S S S S +S
Sbjct: 1838 RRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSR 1897
Query: 216 RKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTD 275
R+ R + RR+ + + + ++ + ++ V S R PV
Sbjct: 1898 RRSRSRTSVTRRRSRSRASPVSRR-RSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRR 1956
Query: 276 EQKSRIQAMKPMTKEEWDARQSIIRK 301
+SR P+T+ +R S I +
Sbjct: 1957 RSRSR---TPPVTRRRSRSRTSPITR 1979
Score = 42.0 bits (97), Expect = 8e-04
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 6/153 (3%)
Query: 67 RARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAH 126
+A+ T R++ S + P + + + + +SS P P K + G + P+ G A+
Sbjct: 805 KAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPHP--KVKSG-TPPRQGSITSPQAN 861
Query: 127 VGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRR 186
S R RS S + KSR + +CS S+ K+ST P + +
Sbjct: 862 EQSVTPQR---RSCFESSPDPELKSRTPSRHSCSGSSPPRVKSSTPPRQSPSRSSSPQPK 918
Query: 187 TRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKR 219
++ S S S SSS S S +S + R+ R
Sbjct: 919 VKAIISPRQRSHSGSSSPSPSRVTSRTTPRRSR 951
Score = 40.4 bits (93), Expect = 0.002
Identities = 41/160 (25%), Positives = 54/160 (33%), Gaps = 20/160 (12%)
Query: 148 KKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSS 207
KK R + S S G A E +KQ A + S SSSS S +
Sbjct: 130 KKNERLRAAFGISDSYVDGSSFDPQRRARE-AKQPAPEPPKPYSLVRESSSSRSPTPKQK 188
Query: 208 SSSSSSD-GRKKRGKYKDKRRKKKKKRK------------------KLKKKGKEKAEAQQ 248
D GR+ + RKK K+K K K+K K+K +
Sbjct: 189 KKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKKRKRS 248
Query: 249 VEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMT 288
P P + HRS + T +SR A K T
Sbjct: 249 RSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHT 288
Score = 40.4 bits (93), Expect = 0.002
Identities = 47/187 (25%), Positives = 77/187 (41%), Gaps = 16/187 (8%)
Query: 67 RARDGTWGVRTKGSGAALPSRPASRA---APRPEASSPPLPLEKARGGLSGPQGGRARGA 123
R+R R S + SR SR+ R + S P+ + R P R R
Sbjct: 1877 RSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSR 1936
Query: 124 MAHVGSRKRSRSRS------RSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEE 177
+R+RSRSR+ RSR R +++SR TS T + ++ T+P
Sbjct: 1937 SRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTS----PITRRRSRSRTSPVTRR 1992
Query: 178 RSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLK 237
RS+ + TR S S +S + S S + + R+ R + RK+ + R L
Sbjct: 1993 RSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIR---RRSRSRTPLLPRKRSRSRSPLA 2049
Query: 238 KKGKEKA 244
+ + ++
Sbjct: 2050 IRRRSRS 2056
Score = 40.4 bits (93), Expect = 0.002
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 22/134 (16%)
Query: 87 RPASRAAP----RPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRS----- 137
R SR +P R + + P+ ++R S R+R + R+RSRSR+
Sbjct: 1981 RSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSR-SRTPPAIRRRSRSRTPLLPR 2039
Query: 138 -RSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSSS 196
RSR R +++SR T R T++G+++ T RS RRR+ S SSS S
Sbjct: 2040 KRSRSRSPLAIRRRSRSRTPR-----TARGKRSLT------RSPPAIRRRSASGSSSDRS 2088
Query: 197 SSSSSSSSSSSSSS 210
S++ ++ + S S
Sbjct: 2089 RSATPPATRNHSGS 2102
Score = 37.7 bits (86), Expect = 0.016
Identities = 52/196 (26%), Positives = 77/196 (39%), Gaps = 20/196 (10%)
Query: 67 RARDGTWGVRTKGSGAALP---SRPASRAAP---RPEASSPPLPLEKARGGLSGPQGGRA 120
R+R T R + A P R SR P R S P ++R R+
Sbjct: 1899 RSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRS 1958
Query: 121 RGAMAHVGSRK-RSRS----RSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGA 175
R V R+ RSR+ R RSR R S +++SR T S T + ++ T+P
Sbjct: 1959 RSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRT----SPVTRRRSRSRTSPVT 2014
Query: 176 EERSKQKA----RRRTRSSSS-SSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKK 230
RS+ + RRR+RS + S S S + S S R RGK R
Sbjct: 2015 RRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRTARGKRSLTRSPPA 2074
Query: 231 KKRKKLKKKGKEKAEA 246
+R+ +++ +
Sbjct: 2075 IRRRSASGSSSDRSRS 2090
Score = 37.0 bits (84), Expect = 0.027
Identities = 65/293 (22%), Positives = 101/293 (34%), Gaps = 63/293 (21%)
Query: 32 AERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARDGTWGVRTKGSGAALPSRPASR 91
A R+ A+S+DT R A +A GR+ G R G G A S P +
Sbjct: 260 AHRSTSADSASSSDTS-RSRSRSAAAKTHTTALAGRSPSPASGRR--GEGDAPFSEPGTT 316
Query: 92 AAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
+ RP S P+ + + + K + +S +R S +R
Sbjct: 317 STQRP----------------SSPETATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTG 360
Query: 152 ------------RKDTSRNCSASTSQGRKASTAPG----AEERSKQKARRRTRSSSSSSS 195
R S A+T ++ P +RS K+ + SSSS S
Sbjct: 361 PEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQSSSSES 420
Query: 196 S------------SSSSSSS-------------SSSSSSSSSSDGRKKRGK---YKDKRR 227
S +SSS S SSS +S + S GR KR K + RR
Sbjct: 421 SPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRR 480
Query: 228 KKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSR 280
+ + K+G+ ++ QW RS + G + +++ R
Sbjct: 481 MGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGR 533
Score = 35.0 bits (79), Expect = 0.10
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 9/122 (7%)
Query: 87 RPASRAAP----RPEASSPPLPLEKARGG--LSGPQGGRARGAMAHVGSRKRSRSRSRSR 140
R SR +P R + +PP ++R L + R+R +A R+RSRSR+
Sbjct: 2005 RSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLA---IRRRSRSRTPRT 2061
Query: 141 GRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSS 200
RG + R+ S S+S +++T P S + +SS S S S
Sbjct: 2062 ARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVALNSSRMSCFSRPS 2121
Query: 201 SS 202
S
Sbjct: 2122 MS 2123
Score = 32.0 bits (71), Expect = 0.86
Identities = 49/218 (22%), Positives = 80/218 (36%), Gaps = 38/218 (17%)
Query: 79 GSGAALPSRPASRAAPRPEASSPPLPLEKAR-------GGLSGPQGG---RARGAMAHVG 128
GS + PSR SR PR S P ++R G S P +H G
Sbjct: 932 GSSSPSPSRVTSRTTPRRSRSVSPCSNVESRLLPRYSHSGSSSPDTKVKPETPPRQSHSG 991
Query: 129 S-------RKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTS--QGRKASTAPGA---- 175
S + ++ G S ++KS+ ++C S S G K+ST PG
Sbjct: 992 SISPYPKVKAQTPPGPSLSGSKSPCPQEKSKDSLVQSCPGSLSLCAGVKSSTPPGESYFG 1051
Query: 176 --------------EERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGK 221
+ RS + +S S S S S S +S S SSS + +
Sbjct: 1052 VSSLQLKGQSQTSPDHRSDTSSPEVRQSHSESPSLQSKSQTSPKGGRSRSSSPVTELASR 1111
Query: 222 YKDKRRKKKKKRKKLKKKGKEKAEAQ-QVEALPGPSLD 258
++ + + + K G +++ Q ++ P++D
Sbjct: 1112 SPIRQDRGEFSASPMLKSGMSPEQSRFQSDSSSYPTVD 1149
Score = 30.0 bits (66), Expect = 3.3
Identities = 37/132 (28%), Positives = 49/132 (37%), Gaps = 23/132 (17%)
Query: 85 PSRPASRAAPRPEASS--PPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGR 142
PSR S +A PE P P ++R G S G R S + SR
Sbjct: 1414 PSRERSSSASSPEMKDGLPRTPSRRSRSGSSP-------------GLRDGSGTPSRHSLS 1460
Query: 143 GSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSS 202
GS KD R + S+GR + + Q R R+RS SS ++ +
Sbjct: 1461 GSSP----GMKDIPR----TPSRGRSECDSSPEPKALPQTPRPRSRSPSSPELNNKCLTP 1512
Query: 203 SSSSSSSSSSSD 214
S S SS D
Sbjct: 1513 QRERSGSESSVD 1524
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 63.5 bits (153), Expect = 3e-10
Identities = 79/337 (23%), Positives = 134/337 (39%), Gaps = 42/337 (12%)
Query: 8 GEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLLASAGGGR 67
G E R+ RL+ PG+ R+ + + + + + G + S R
Sbjct: 162 GTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSR 221
Query: 68 ARDGTWGVRTKGSGAALPSRPASRAAPRPEAS-SPPLPLEKARGGLSGPQGGRARGAMA- 125
+R G+ R+K SR SR+ + E S SP ++R +G +++
Sbjct: 222 SRSGSRS-RSKSR-----SRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEE 275
Query: 126 ------HVGSRK-----RSRSRSRSRGRGSEKR---KKKSRKDTSRNCSASTSQGRKAST 171
+VG K R +S+S+SR R E+R +K+ R+ S Q R S
Sbjct: 276 KIQNNDNVGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSR 335
Query: 172 APG---------AEERSKQKARRRTRSSSSSSSSSSSSSSSS---SSSSSSSSSDGRKKR 219
+ G ++ + K+K R+R+R S S S S S S S S S + +KK+
Sbjct: 336 SKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKK 395
Query: 220 GKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEAL-----PGPSLDQWHRSAGEEEDGPVLT 274
+ D+ + + R K++ K+E+ Q E G + + RS + P L
Sbjct: 396 KEDTDRSQSRSPSRSVSKEREHAKSESSQREGRGESENAGTNQETRSRSRSNSKSKPNLP 455
Query: 275 DEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTR 311
E +SR ++ +S R P R+R
Sbjct: 456 SESRSRSKSASKTRSRSKSRSRSASR---SPSRSRSR 489
Score = 57.8 bits (138), Expect = 1e-08
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 2/161 (1%)
Query: 86 SRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSE 145
SR S+ R + S +K +G + R+R R R R R GS
Sbjct: 332 SRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSS 391
Query: 146 KRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSS 205
K+KKK +DT R+ S S S+ E S+++ R + ++ ++ + S S S+S
Sbjct: 392 KKKKK--EDTDRSQSRSPSRSVSKEREHAKSESSQREGRGESENAGTNQETRSRSRSNSK 449
Query: 206 SSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEA 246
S + S + + K + R K + R + + ++ +
Sbjct: 450 SKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSRS 490
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 63.5 bits (153), Expect = 3e-10
Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTR 188
++K+S RSRS+ R S R S + S S S+ R +S+ ++ RS+ +R R+R
Sbjct: 194 NKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSS---SQSRSRSSSRERSR 250
Query: 189 SSSSSSSSSSSSSSSSSS------SSSSSSSDGRKKRGKYKDKRRKKKKKRK 234
S S S SSS S SSS SSSSSS + +KR + + +KKR+
Sbjct: 251 SRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRR 302
Score = 54.3 bits (129), Expect = 2e-07
Identities = 42/118 (35%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Query: 113 SGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSAS---TSQGRKA 169
S P R+R SR RS S S+SR R S + + +SR SR+ S S +S RK
Sbjct: 218 SSPSSSRSRSR-----SRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKR 272
Query: 170 STAPGAEERSKQKARRRTRSSSSS--------SSSSSSSSSSSSSSSSSSSSDGRKKR 219
S + + + + R R+RSSSS S S SSS SS S S KK+
Sbjct: 273 SYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPERRHRSSSGSSHSGSRSSSKKK 330
Score = 53.1 bits (126), Expect = 4e-07
Identities = 42/117 (35%), Positives = 61/117 (52%), Gaps = 11/117 (9%)
Query: 119 RARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEER 178
R++ +H S RS S S SR R S R + S SR+ S+S R+ S + G++ R
Sbjct: 203 RSKSRSSHSRSSSRSSSPSSSRSR-SRSRSRSSSSSQSRSRSSS----RERSRSRGSKSR 257
Query: 179 SKQKARR-----RTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKK 230
S ++ R R RS S SSSSS + S S SSSS D +K+R + + R+ +
Sbjct: 258 SSSRSHRGSSSPRKRSYS-SSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPERRHR 313
Score = 52.4 bits (124), Expect = 6e-07
Identities = 42/122 (34%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 90 SRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSR-SRSRGRGSEKRK 148
SR++ R + S ++R S R+R + SR+RSRSR S+SR R
Sbjct: 211 SRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSS-----SRERSRSRGSKSRSSSRSHRG 265
Query: 149 KKS-RKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSS 207
S RK + + S+S + RK S + + ++K R R+RS SSS SS S S S
Sbjct: 266 SSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPERRHRSSSGSSHSGSRS 325
Query: 208 SS 209
SS
Sbjct: 326 SS 327
Score = 51.2 bits (121), Expect = 1e-06
Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 144 SEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSS-SSSSSSS 202
SE+ +K R+ S S S ++S+ + S+ ++R R+RSSSSS S S SSS
Sbjct: 188 SEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRE 247
Query: 203 SSSSSSSSSSSDGRKKRGKYKDKRR-------KKKKKRKKLKKKGKEKAEAQQVEALPGP 255
S S S S S R RG ++R ++ RK+ + + + ++
Sbjct: 248 RSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKK-RRTRSR 306
Query: 256 SLDQWHR-SAGEEEDGPVLTDEQK 278
S ++ HR S+G G + ++K
Sbjct: 307 SPERRHRSSSGSSHSGSRSSSKKK 330
Score = 45.4 bits (106), Expect = 7e-05
Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 4/151 (2%)
Query: 118 GRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEE 177
G+A G + + + S + K K +D + + + AS E+
Sbjct: 136 GKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEE---ED 192
Query: 178 RSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLK 237
+K+K+ RR+RS S SS S SSS SS S SSS S S R + R + + +
Sbjct: 193 SNKKKSNRRSRSKSRSSHSRSSSRSS-SPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRS 251
Query: 238 KKGKEKAEAQQVEALPGPSLDQWHRSAGEEE 268
+ K ++ ++ P + S+ E
Sbjct: 252 RGSKSRSSSRSHRGSSSPRKRSYSSSSSSPE 282
Score = 37.4 bits (85), Expect = 0.020
Identities = 37/123 (30%), Positives = 49/123 (39%), Gaps = 26/123 (21%)
Query: 80 SGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRS 139
S ++ S+ SR++ R + S + G R R + S +R+R RSRS
Sbjct: 231 SRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRS 290
Query: 140 RGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSS 199
R S RKK+ R S +P RR RSSS SS S S
Sbjct: 291 RSSSSGDRKKR----------------RTRSRSP----------ERRHRSSSGSSHSGSR 324
Query: 200 SSS 202
SSS
Sbjct: 325 SSS 327
>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
Length = 320
Score = 63.5 bits (153), Expect = 3e-10
Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTR 188
++K+S RSRS+ R S R S + S S S+ R +S+ ++ RS+ +R R+R
Sbjct: 194 NKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSS---SQSRSRSSSRERSR 250
Query: 189 SSSSSSSSSSSSSSSSSS------SSSSSSSDGRKKRGKYKDKRRKKKKKRK 234
S S S SSS S SSS SSSSSS + +KR + + +KKR+
Sbjct: 251 SRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRR 302
Score = 52.8 bits (125), Expect = 5e-07
Identities = 41/104 (39%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 119 RARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEER 178
R++ +H S RS S S SR R S R + S SR+ S+S R+ S + G++ R
Sbjct: 203 RSKSRSSHSRSSSRSSSPSSSRSR-SRSRSRSSSSSQSRSRSSS----RERSRSRGSKSR 257
Query: 179 SKQKARRRTRSSSSSSSSSSSSS---SSSSSSSSSSSSDGRKKR 219
S ++ R + S S SSSSSS + S S SSSS RKKR
Sbjct: 258 SSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKR 301
Score = 50.4 bits (119), Expect = 2e-06
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Query: 144 SEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSS-SSSSSSS 202
SE+ +K R+ S S S ++S+ + S+ ++R R+RSSSSS S S SSS
Sbjct: 188 SEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRE 247
Query: 203 SSSSSSSSSSSDGRKKRGKYKDKR-----------RKKKKKRKKLKKKGKEK 243
S S S S S R RG ++ R +K+ R + G K
Sbjct: 248 RSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRK 299
Score = 49.3 bits (116), Expect = 5e-06
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 113 SGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSAS---TSQGRKA 169
S P R+R SR RS S S+SR R S + + +SR SR+ S S +S RK
Sbjct: 218 SSPSSSRSRSR-----SRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKR 272
Query: 170 STAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKK 218
S + + S ++ R+R+RS SSSS + S S S + K+
Sbjct: 273 SYSSSSS--SPERNRKRSRSRSSSSGDRKKRRTRSRSPESQVIGENTKQ 319
Score = 45.4 bits (106), Expect = 7e-05
Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 4/151 (2%)
Query: 118 GRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEE 177
G+A G + + + S + K K +D + + + AS E+
Sbjct: 136 GKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEE---ED 192
Query: 178 RSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLK 237
+K+K+ RR+RS S SS S SSS SS S SSS S S R + R + + +
Sbjct: 193 SNKKKSNRRSRSKSRSSHSRSSSRSS-SPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRS 251
Query: 238 KKGKEKAEAQQVEALPGPSLDQWHRSAGEEE 268
+ K ++ ++ P + S+ E
Sbjct: 252 RGSKSRSSSRSHRGSSSPRKRSYSSSSSSPE 282
Score = 40.8 bits (94), Expect = 0.002
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 90 SRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSR-SRSRGRGSEKRK 148
SR++ R + S ++R S R+R + SR+RSRSR S+SR R
Sbjct: 211 SRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSS-----SRERSRSRGSKSRSSSRSHRG 265
Query: 149 KKS-RKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSS 192
S RK + + S+S + RK S + + ++K R R+RS S
Sbjct: 266 SSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPES 310
Score = 32.3 bits (72), Expect = 0.66
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 80 SGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRS 139
S ++ S+ SR++ R + S + G R R + S +R+R RSRS
Sbjct: 231 SRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRS 290
Query: 140 RGRGS---EKRKKKSRKDTSRNCSASTSQ 165
R S +KR+ +SR S+ +T Q
Sbjct: 291 RSSSSGDRKKRRTRSRSPESQVIGENTKQ 319
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 62.8 bits (151), Expect = 5e-10
Identities = 68/221 (30%), Positives = 92/221 (41%), Gaps = 17/221 (7%)
Query: 2 ERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLLA 61
E +G G E LL + V +++A E D G G + P LL+
Sbjct: 2444 EESGAKGPRRPGEEAELLVKLDHEGVTSPKSKKAK-EALLLREDPGAGGW--QEPKSLLS 2500
Query: 62 -----SAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQ 116
A G W T G A P + E S P +KA+ G +
Sbjct: 2501 LGSYPPAAGSSEPKAPWPKATDGDLAQEPGPGLTF-----EDSGNPKSPDKAQAEQDGAE 2555
Query: 117 GGRARGAMAHVGSRKRSRSRSR-SRGRGSEKRKKKSRKDTS---RNCSASTSQGRKASTA 172
+ + + S S S S S G E+ K RNCSA++S+ +++
Sbjct: 2556 ESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASS 2615
Query: 173 PGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSS 213
+ S + + SSSSSSSSSSSSSSSSSSSSSSSSS
Sbjct: 2616 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2656
Score = 59.3 bits (142), Expect = 5e-09
Identities = 58/203 (28%), Positives = 86/203 (42%), Gaps = 10/203 (4%)
Query: 13 AREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARDGT 72
A+E LL PGA + ++ L +G+ G + AP + G A++
Sbjct: 2477 AKEALLLREDPGAGGWQE--PKSLLSLGSYPPAAG----SSEPKAPWPKATDGDLAQEPG 2530
Query: 73 WGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSR-- 130
G+ + SG P P A + A + G S + G+
Sbjct: 2531 PGLTFEDSGN--PKSPDKAQAEQDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGD 2588
Query: 131 KRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSS 190
K + GR ++ S + S+S+S +S++ + S + + SS
Sbjct: 2589 KNGDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2648
Query: 191 SSSSSSSSSSSSSSSSSSSSSSS 213
SSSSSSSSSSSSSSSSSSSSSSS
Sbjct: 2649 SSSSSSSSSSSSSSSSSSSSSSS 2671
Score = 55.8 bits (133), Expect = 6e-08
Identities = 51/211 (24%), Positives = 81/211 (38%), Gaps = 10/211 (4%)
Query: 94 PRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRK 153
P +S P P KA G + G G +S ++++ G+E+ + S
Sbjct: 2506 PAAGSSEPKAPWPKATDGDLAQEPGP--GLTFEDSGNPKSPDKAQAEQDGAEESESSS-S 2562
Query: 154 DTSRNCSASTSQGRKASTAPGAEERSKQK-------ARRRTRSSSSSSSSSSSSSSSSSS 206
+S + S+S+S S G EE K R + +SS ++S +SSSSSSSSS
Sbjct: 2563 SSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSSSSS 2622
Query: 207 SSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGE 266
SSSSSSS + + + + D+ + +
Sbjct: 2623 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSD 2682
Query: 267 EEDGPVLTDEQKSRIQAMKPMTKEEWDARQS 297
+E P T ++ TK+ AR S
Sbjct: 2683 DEAAPAPTAGPSAQAALPTKATKQAGKARPS 2713
Score = 48.5 bits (114), Expect = 9e-06
Identities = 43/201 (21%), Positives = 78/201 (38%), Gaps = 2/201 (0%)
Query: 55 GPAPLLASAGGGRARDGTWGVR--TKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGL 112
GP +G ++ D + + S ++ S S ++ +SS + G
Sbjct: 2530 GPGLTFEDSGNPKSPDKAQAEQDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDK 2589
Query: 113 SGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTA 172
+G G G S + + S S S S +S + S+S+S +S++
Sbjct: 2590 NGDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2649
Query: 173 PGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKK 232
+ S + + SSSSSS++ SS SS ++ + + G + K K+ K
Sbjct: 2650 SSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAGPSAQAALPTKATKQAGK 2709
Query: 233 RKKLKKKGKEKAEAQQVEALP 253
+ +K A Q +A P
Sbjct: 2710 ARPSAHSPGKKTPAPQPQAPP 2730
Score = 41.6 bits (96), Expect = 0.001
Identities = 42/179 (23%), Positives = 69/179 (38%), Gaps = 5/179 (2%)
Query: 43 SADTGVRGCGARGPAPLLASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPP 102
+ + G + RGP AG + D W T+ + AS AAP P +++P
Sbjct: 1964 AVEKGRKARKLRGPKEPGFEAGPEASDDDLW---TRRRSERIFLHDASAAAPAPVSTAPA 2020
Query: 103 LPLEK-ARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSA 161
+ A+GG P+ R A RK+ + + G G + + +R A
Sbjct: 2021 TKTSRCAKGGPLSPRKDAGR-AKDRKDPRKKKKGKEAGPGAGLPPPRAPALPSEARAPHA 2079
Query: 162 STSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRG 220
S+ K S A + K++ R + + S S ++ + SS S D RG
Sbjct: 2080 SSLTAAKRSKAKAKGKEVKKENRGKGGAVSKLMESMAAEEDFEPNQDSSFSEDEHLPRG 2138
Score = 33.9 bits (76), Expect = 0.23
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 19/103 (18%)
Query: 37 LEVGAASADTGVRGCGARGPAPLLASAGGGRARDGTWGVRTKGS---------GAALPSR 87
+++ + + D R A P L A G R D G+R K S A P+
Sbjct: 388 IQIASQARDARAREREAGRPGVLQAPPGSPRPLDRPEGLREKNSVIRSLKRPPPADAPTV 447
Query: 88 PASRAAPRPEASSP----------PLPLEKARGGLSGPQGGRA 120
A+RA+P P A P P P E+A G +GP +A
Sbjct: 448 RATRASPDPRAYVPAKELLKPEADPRPCERAPRGPAGPAAQQA 490
Score = 32.0 bits (71), Expect = 0.86
Identities = 60/283 (21%), Positives = 103/283 (36%), Gaps = 50/283 (17%)
Query: 61 ASAGGGR--ARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGG 118
AS GG R AR+ + SG L +R A+ A P P P L + + +
Sbjct: 1842 ASGGGYRLGARERALSPGLEESGLGLLARFAASALPSPTVG-PSLSVVQLEAKQKARKKE 1900
Query: 119 RARGAMAHVGSRKRSRS--RSRSRGRGSEKRKKKSRKDTSRNCSAST------------- 163
+ + S S + R R R KK + + +A T
Sbjct: 1901 ERQSLLGTEFEYTDSESEVKVRKRSPAGLLRPKKGLGEPGPSLAAPTPGARGPDPSSPDK 1960
Query: 164 -----SQGRKASTAPGAEERSKQKA----------RRRTR-------SSSSSSSSSSSSS 201
+GRKA G +E + RRR+ S+++ + S++ +
Sbjct: 1961 AKLAVEKGRKARKLRGPKEPGFEAGPEASDDDLWTRRRSERIFLHDASAAAPAPVSTAPA 2020
Query: 202 SSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWH 261
+ +S + RK G+ KD++ +K KKKGKE + P+L
Sbjct: 2021 TKTSRCAKGGPLSPRKDAGRAKDRKDPRK------KKKGKEAGPGAGLPPPRAPALP--- 2071
Query: 262 RSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVD 304
S LT ++S+ +A K+E + + K+++
Sbjct: 2072 -SEARAPHASSLTAAKRSKAKAKGKEVKKENRGKGGAVSKLME 2113
Score = 30.4 bits (67), Expect = 2.5
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 151 SRKDTSRNCSASTSQGRKASTA----PGAEERSK-----QKARRRTRSSSSSSSSSSSSS 201
S K SR S T +G+ TA PGA+ R + KA+ ++ + +
Sbjct: 2299 SAKRRSRKTSKDTGEGKDGGTAGSEEPGAKARGRGRKPSAKAKGDRAATLEEGNPTDEVP 2358
Query: 202 SSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKR 233
S+ + SS+ +K + DKR K K R
Sbjct: 2359 STPLALEPSSTPGSKKSPPEPVDKRAKAPKAR 2390
Score = 30.0 bits (66), Expect = 3.3
Identities = 36/153 (23%), Positives = 55/153 (35%), Gaps = 13/153 (8%)
Query: 33 ERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARDGTWGVRTKGSGAALPSRPASRA 92
+ A+ G + G G P P SAG RA+ + G AA R R
Sbjct: 598 DAVAVRPGGCGKKSPFGGLGTMKPEPAPTSAGASRAQA---RLPHSGGPAAGGGRQLKRD 654
Query: 93 APRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSR 152
RPE++ KA G G A VG + + +R + G R
Sbjct: 655 PERPESA-------KAFGREGSGAQGEAEVRHPPVGI---AVAVARQKDSGGSGRLGPGL 704
Query: 153 KDTSRNCSASTSQGRKASTAPGAEERSKQKARR 185
D R+ S S +G + ++R++ + R
Sbjct: 705 VDQERSLSLSNVKGHGRADEDCVDDRARHREER 737
>gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens]
Length = 1512
Score = 62.8 bits (151), Expect = 5e-10
Identities = 64/251 (25%), Positives = 90/251 (35%), Gaps = 29/251 (11%)
Query: 20 PRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARDGTWGVRTKG 79
P P + A AA AA+A + C + GP + G+ R G R +G
Sbjct: 52 PPPPPPLLFLAAPGTAAAAAAAAAASSS---CFSPGPPLEVKRLARGKRRAGGRQKRRRG 108
Query: 80 SGAAL------------PSRPASRAAPRPEASSPPLPLEKAR---------GGLSGPQGG 118
A P + A +P + E GG S
Sbjct: 109 PRAGQEAEKRRVFSLPQPQQDGGGGASSGGGVTPLVEYEDVSSQSEQGLLLGGASAATAA 168
Query: 119 RARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEER 178
A G G S S ++ RG GSE+R ++ R+ +S + R+ G E
Sbjct: 169 TAAGGTGGSGGSPASSSGTQRRGEGSERRPRRDRRSSSGRSKERHREHRRRDGQRGGSEA 228
Query: 179 SKQKAR-----RRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKR 233
SK ++R + S SSSSS S+S++SSSS RK R + R K K
Sbjct: 229 SKSRSRHSHSGEERAEVAKSGSSSSSGGRRKSASATSSSSSSRKDRDSKAHRSRTKSSKE 288
Query: 234 KKLKKKGKEKA 244
K KA
Sbjct: 289 PPSAYKEPPKA 299
Score = 43.1 bits (100), Expect = 4e-04
Identities = 42/186 (22%), Positives = 80/186 (43%), Gaps = 15/186 (8%)
Query: 116 QGGRARGAMAHVGSRKRSRSRSR---SRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTA 172
+ G++R + S + SRSRSR SR R S + +A ++ +KA A
Sbjct: 405 RSGKSRSRSPY--SSRHSRSRSRHRLSRSRSRHSSISPSTLTLKSSLAAELNKNKKARAA 462
Query: 173 PGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKK 232
A KA T+++ +++ ++ +S++S+ + ++ +S + KD ++ K +
Sbjct: 463 EAARAAEAAKAAEATKAAEAAAKAAKASNTSTPTKGNTETSASASQTNHVKDVKKIKIEH 522
Query: 233 RKK------LKK-KGKEKAEAQQVEALPGPSLDQWHRSA---GEEEDGPVLTDEQKSRIQ 282
LK K K K Q + +D+ + A G+E +E S +
Sbjct: 523 APSPSSGGTLKNDKAKTKPPLQVTKVENNLIVDKATKKAVIVGKESKSAATKEESVSLKE 582
Query: 283 AMKPMT 288
KP+T
Sbjct: 583 KTKPLT 588
Score = 38.5 bits (88), Expect = 0.009
Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 23/180 (12%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPL-----PLEKARGGLSGP 115
+S+ GGR + + T S ++ R + R ++S P P + R + P
Sbjct: 251 SSSSGGRRKSAS---ATSSSSSSRKDRDSKAHRSRTKSSKEPPSAYKEPPKAYREDKTEP 307
Query: 116 QGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGA 175
+ R R +++ +G R S R+ + +SRK S S+ R+ +P
Sbjct: 308 KAYRRRRSLSPLGGRDDSPVSHRA------SQSLRSRKSPSPAGGGSSPYSRRLPRSPSP 361
Query: 176 EERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 235
+RRR+ S S SS S S SSSS R+ R Y R+ K R +
Sbjct: 362 Y------SRRRSPSYSRHSSYERGGDVSPSPYSSSS---WRRSRSPYSPVLRRSGKSRSR 412
>gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens]
Length = 1452
Score = 62.8 bits (151), Expect = 5e-10
Identities = 64/251 (25%), Positives = 90/251 (35%), Gaps = 29/251 (11%)
Query: 20 PRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARDGTWGVRTKG 79
P P + A AA AA+A + C + GP + G+ R G R +G
Sbjct: 52 PPPPPPLLFLAAPGTAAAAAAAAAASSS---CFSPGPPLEVKRLARGKRRAGGRQKRRRG 108
Query: 80 SGAAL------------PSRPASRAAPRPEASSPPLPLEKAR---------GGLSGPQGG 118
A P + A +P + E GG S
Sbjct: 109 PRAGQEAEKRRVFSLPQPQQDGGGGASSGGGVTPLVEYEDVSSQSEQGLLLGGASAATAA 168
Query: 119 RARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEER 178
A G G S S ++ RG GSE+R ++ R+ +S + R+ G E
Sbjct: 169 TAAGGTGGSGGSPASSSGTQRRGEGSERRPRRDRRSSSGRSKERHREHRRRDGQRGGSEA 228
Query: 179 SKQKAR-----RRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKR 233
SK ++R + S SSSSS S+S++SSSS RK R + R K K
Sbjct: 229 SKSRSRHSHSGEERAEVAKSGSSSSSGGRRKSASATSSSSSSRKDRDSKAHRSRTKSSKE 288
Query: 234 KKLKKKGKEKA 244
K KA
Sbjct: 289 PPSAYKEPPKA 299
Score = 43.1 bits (100), Expect = 4e-04
Identities = 42/186 (22%), Positives = 80/186 (43%), Gaps = 15/186 (8%)
Query: 116 QGGRARGAMAHVGSRKRSRSRSR---SRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTA 172
+ G++R + S + SRSRSR SR R S + +A ++ +KA A
Sbjct: 405 RSGKSRSRSPY--SSRHSRSRSRHRLSRSRSRHSSISPSTLTLKSSLAAELNKNKKARAA 462
Query: 173 PGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKK 232
A KA T+++ +++ ++ +S++S+ + ++ +S + KD ++ K +
Sbjct: 463 EAARAAEAAKAAEATKAAEAAAKAAKASNTSTPTKGNTETSASASQTNHVKDVKKIKIEH 522
Query: 233 RKK------LKK-KGKEKAEAQQVEALPGPSLDQWHRSA---GEEEDGPVLTDEQKSRIQ 282
LK K K K Q + +D+ + A G+E +E S +
Sbjct: 523 APSPSSGGTLKNDKAKTKPPLQVTKVENNLIVDKATKKAVIVGKESKSAATKEESVSLKE 582
Query: 283 AMKPMT 288
KP+T
Sbjct: 583 KTKPLT 588
Score = 38.5 bits (88), Expect = 0.009
Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 23/180 (12%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPL-----PLEKARGGLSGP 115
+S+ GGR + + T S ++ R + R ++S P P + R + P
Sbjct: 251 SSSSGGRRKSAS---ATSSSSSSRKDRDSKAHRSRTKSSKEPPSAYKEPPKAYREDKTEP 307
Query: 116 QGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGA 175
+ R R +++ +G R S R+ + +SRK S S+ R+ +P
Sbjct: 308 KAYRRRRSLSPLGGRDDSPVSHRA------SQSLRSRKSPSPAGGGSSPYSRRLPRSPSP 361
Query: 176 EERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 235
+RRR+ S S SS S S SSSS R+ R Y R+ K R +
Sbjct: 362 Y------SRRRSPSYSRHSSYERGGDVSPSPYSSSS---WRRSRSPYSPVLRRSGKSRSR 412
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.123 0.343
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,199,223
Number of Sequences: 37866
Number of extensions: 842062
Number of successful extensions: 36051
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 1285
Number of HSP's that attempted gapping in prelim test: 12580
Number of HSP's gapped (non-prelim): 10725
length of query: 352
length of database: 18,247,518
effective HSP length: 103
effective length of query: 249
effective length of database: 14,347,320
effective search space: 3572482680
effective search space used: 3572482680
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.