Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SCARB2 Sequence: fasta or formatted (478aa) NCBI GI: 5031631
Description:

scavenger receptor class B, member 2

Referenced in:

Collagen
Lysosomes and Related Organelles
Additional Membrane Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         23           2
 C cysteine            1.7          8           2
 D aspartate           6.1         29           2
 E glutamate           6.5         31           2
 F phenylalanine       6.5         31           2
 G glycine             6.3         30           1
 H histidine           1.7          8           1
 I isoleucine          8.2         39           2
 K lysine              5.0         24           2
 L leucine             8.6         41           4
 M methionine          2.1         10           1
 N asparagine          5.2         25           1
 P proline             4.6         22           2
 Q glutamine           2.7         13           2
 R arginine            4.0         19           1
 S serine              5.4         26           1
 T threonine           7.3         35           2
 V valine              7.7         37           1
 W tryptophan          1.5          7           2
 Y tyrosine            4.2         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   scavenger receptor class B, member 2 
SCARB1                0.274   scavenger receptor class B, member 1 isoform 2 [Hom...
SCARB1                0.271   scavenger receptor class B, member 1 isoform 1 [Hom...
CD36                  0.258   CD36 antigen 
CD36                  0.258   CD36 antigen 
CD36                  0.258   CD36 antigen 
CD36                  0.258   CD36 antigen 
CD36                  0.258   CD36 antigen 
CCDC37                0.005   coiled-coil domain containing 37 
LARP1                 0.004   la related protein isoform 2 
LARP1                 0.004   la related protein isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press