Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 50083289
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50083289 selenoprotein I [Homo sapiens]
(397 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50083289 selenoprotein I [Homo sapiens] 815 0.0
gi|5174415 choline/ethanolaminephosphotransferase [Homo sapiens] 131 1e-30
gi|56118223 choline/ethanolaminephosphotransferase [Homo sapiens] 131 1e-30
gi|50726996 choline phosphotransferase 1 [Homo sapiens] 125 5e-29
gi|63054832 cytochrome b-561 [Homo sapiens] 33 0.59
gi|63054830 cytochrome b-561 [Homo sapiens] 33 0.59
gi|63054828 cytochrome b-561 [Homo sapiens] 33 0.59
gi|33589846 membrane-associated ring finger (C3HC4) 6 [Homo sapi... 32 1.0
gi|119943110 cystinosis, nephropathic isoform 2 [Homo sapiens] 31 2.2
gi|119943118 cystinosis, nephropathic isoform 1 [Homo sapiens] 31 2.2
gi|9966787 solute carrier family 24 (sodium/potassium/calcium ex... 30 2.9
gi|221219017 olfactory receptor, family 52, subfamily N, member ... 30 2.9
gi|16418361 RFT1 homolog [Homo sapiens] 30 5.0
gi|4759128 solute carrier family 24 (sodium/potassium/calcium ex... 29 6.5
>gi|50083289 selenoprotein I [Homo sapiens]
Length = 397
Score = 815 bits (2106), Expect = 0.0
Identities = 397/397 (100%), Positives = 397/397 (100%)
Query: 1 MAGYEYVSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTIVKVFPTWLAPNLITFSGFLL 60
MAGYEYVSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTIVKVFPTWLAPNLITFSGFLL
Sbjct: 1 MAGYEYVSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTIVKVFPTWLAPNLITFSGFLL 60
Query: 61 VVFNFLLMAYFDPDFYASAPGHKHVPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPL 120
VVFNFLLMAYFDPDFYASAPGHKHVPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPL
Sbjct: 61 VVFNFLLMAYFDPDFYASAPGHKHVPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPL 120
Query: 121 GELFDHGLDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYNTGIL 180
GELFDHGLDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYNTGIL
Sbjct: 121 GELFDHGLDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYNTGIL 180
Query: 181 FLPWGYDISQVTISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIGCALCVTLPMSLL 240
FLPWGYDISQVTISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIGCALCVTLPMSLL
Sbjct: 181 FLPWGYDISQVTISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIGCALCVTLPMSLL 240
Query: 241 NFFRSYKNNTLKLNSVYEAMVPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMVGTAF 300
NFFRSYKNNTLKLNSVYEAMVPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMVGTAF
Sbjct: 241 NFFRSYKNNTLKLNSVYEAMVPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMVGTAF 300
Query: 301 ANSTCQLIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVASYVESILLYTLTTAFTLAHIH 360
ANSTCQLIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVASYVESILLYTLTTAFTLAHIH
Sbjct: 301 ANSTCQLIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVASYVESILLYTLTTAFTLAHIH 360
Query: 361 YGVRVVKQLSSHFQIYPFSLRKPNSDULGMEEKNIGL 397
YGVRVVKQLSSHFQIYPFSLRKPNSD LGMEEKNIGL
Sbjct: 361 YGVRVVKQLSSHFQIYPFSLRKPNSDULGMEEKNIGL 397
>gi|5174415 choline/ethanolaminephosphotransferase [Homo sapiens]
Length = 416
Score = 131 bits (329), Expect = 1e-30
Identities = 102/383 (26%), Positives = 182/383 (47%), Gaps = 26/383 (6%)
Query: 7 VSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTIVKVFPTWLAPNLITFSGFLLVVFNFL 66
+S QL ++++Y + + L +M +W +V+ P+W+APNLIT G + + +
Sbjct: 43 LSRHQLKRLEEHRYQSAGRSLLEP-LMQGYWEWLVRRVPSWIAPNLITIIGLSINICTTI 101
Query: 67 LMAYFDPDFYASAPGHKHVPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPLGELFDH 126
L+ ++ P AP W +I F+ +LD +DGKQARRTNSS+PLGELFDH
Sbjct: 102 LLVFYCPTATEQAPL------WAYIACACGLFIYQSLDAIDGKQARRTNSSSPLGELFDH 155
Query: 127 GLDSWSCVYFVV-TVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWG 185
G DS S V+ V+ T ++ G + ++ + F F +HW+ Y +G L
Sbjct: 156 GCDSLSTVFVVLGTCIAV----QLGTNPDWMFFCCFAGTFMFYCAHWQTYVSGTLRFGI- 210
Query: 186 YDISQVTISFV--YIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIGCALCVTLPMSLLNFF 243
D+++V I + +++ + G W + +F A+ C + T+ S N+F
Sbjct: 211 IDVTEVQIFIIIMHLLAVIGGPPFWQSMIPVLNIQMKIFPAL---CTVAGTI-FSCTNYF 266
Query: 244 RSYKNNTLKLNSVYEAMVPLFSPCLLF--ILSTAWILWSPS--DILELHPRVFYFMVGTA 299
R + N A + SP L +++ A +++ S + E HP ++ G
Sbjct: 267 RVIFTGGVGKNGSTIAGTSVLSPFLHIGSVITLAAMIYKKSAVQLFEKHPCLYILTFGFV 326
Query: 300 FANSTCQLIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVASYVESILLYTLTTAFTLAH- 358
A T +L+V M+ + + + L L ++ S+++ ++ + F+
Sbjct: 327 SAKITNKLVVAHMTKSEMHLHDTAFIGPAL--LFLDQYFNSFIDEYIVLWIALVFSFFDL 384
Query: 359 IHYGVRVVKQLSSHFQIYPFSLR 381
I Y V V Q++SH I+ F ++
Sbjct: 385 IRYCVSVCNQIASHLHIHVFRIK 407
>gi|56118223 choline/ethanolaminephosphotransferase [Homo sapiens]
Length = 416
Score = 131 bits (329), Expect = 1e-30
Identities = 102/383 (26%), Positives = 182/383 (47%), Gaps = 26/383 (6%)
Query: 7 VSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTIVKVFPTWLAPNLITFSGFLLVVFNFL 66
+S QL ++++Y + + L +M +W +V+ P+W+APNLIT G + + +
Sbjct: 43 LSRHQLKRLEEHRYQSAGRSLLEP-LMQGYWEWLVRRVPSWIAPNLITIIGLSINICTTI 101
Query: 67 LMAYFDPDFYASAPGHKHVPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPLGELFDH 126
L+ ++ P AP W +I F+ +LD +DGKQARRTNSS+PLGELFDH
Sbjct: 102 LLVFYCPTATEQAPL------WAYIACACGLFIYQSLDAIDGKQARRTNSSSPLGELFDH 155
Query: 127 GLDSWSCVYFVV-TVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWG 185
G DS S V+ V+ T ++ G + ++ + F F +HW+ Y +G L
Sbjct: 156 GCDSLSTVFVVLGTCIAV----QLGTNPDWMFFCCFAGTFMFYCAHWQTYVSGTLRFGI- 210
Query: 186 YDISQVTISFV--YIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIGCALCVTLPMSLLNFF 243
D+++V I + +++ + G W + +F A+ C + T+ S N+F
Sbjct: 211 IDVTEVQIFIIIMHLLAVIGGPPFWQSMIPVLNIQMKIFPAL---CTVAGTI-FSCTNYF 266
Query: 244 RSYKNNTLKLNSVYEAMVPLFSPCLLF--ILSTAWILWSPS--DILELHPRVFYFMVGTA 299
R + N A + SP L +++ A +++ S + E HP ++ G
Sbjct: 267 RVIFTGGVGKNGSTIAGTSVLSPFLHIGSVITLAAMIYKKSAVQLFEKHPCLYILTFGFV 326
Query: 300 FANSTCQLIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVASYVESILLYTLTTAFTLAH- 358
A T +L+V M+ + + + L L ++ S+++ ++ + F+
Sbjct: 327 SAKITNKLVVAHMTKSEMHLHDTAFIGPAL--LFLDQYFNSFIDEYIVLWIALVFSFFDL 384
Query: 359 IHYGVRVVKQLSSHFQIYPFSLR 381
I Y V V Q++SH I+ F ++
Sbjct: 385 IRYCVSVCNQIASHLHIHVFRIK 407
>gi|50726996 choline phosphotransferase 1 [Homo sapiens]
Length = 406
Score = 125 bits (315), Expect = 5e-29
Identities = 97/320 (30%), Positives = 152/320 (47%), Gaps = 27/320 (8%)
Query: 5 EYVSPEQLAGFDKYKYSAVDTN----PLSLYVMHPFWNTIVKVFPTWLAPNLITFSGFLL 60
E +S QL ++++YSA + PL LY W +++ P W+APN IT G +
Sbjct: 19 EPLSAAQLRRLEEHRYSAAGVSLLEPPLQLY-----WTWLLQWIPLWMAPNSITLLGLAV 73
Query: 61 VVFNFLLMAYFDPDFYASAPGHKHVPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPL 120
V L++ + P AP W +++ + F+ +LD +DGKQARRTNS +PL
Sbjct: 74 NVVTTLVLISYCPTATEEAPY------WTYLLCALGLFIYQSLDAIDGKQARRTNSCSPL 127
Query: 121 GELFDHGLDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYNTGIL 180
GELFDHG DS S V+ V SI R T F + ++ +F F +HW+ Y +G+L
Sbjct: 128 GELFDHGCDSLSTVFMAVGA-SIAARLGTYPDWF--FFCSFIGMFVFYCAHWQTYVSGML 184
Query: 181 -FLPWGYDISQVTISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIGCALCVTLPMSL 239
F Q+ + V++++A G W + L L ++G V S
Sbjct: 185 RFGKVDVTEIQIALVIVFVLSAFGGATMW--DYTIPILEIKLKILPVLGFLGGVIFSCS- 241
Query: 240 LNFFRSYKNNTLKLNSVYEAMVPLFSP----CLLFILSTAWILWSPSDILELHPRVFYFM 295
N+F + + N A + SP L+ IL+ S +D+ E HP ++ M
Sbjct: 242 -NYFHVILHGGVGKNGSTIAGTSVLSPGLHIGLIIILAIMIYKKSATDVFEKHPCLYILM 300
Query: 296 VGTAFANSTCQLIVCQMSST 315
G FA + +L+V M+ +
Sbjct: 301 FGCVFAKVSQKLVVAHMTKS 320
>gi|63054832 cytochrome b-561 [Homo sapiens]
Length = 251
Score = 32.7 bits (73), Expect = 0.59
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 150 GVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQVTISFVYIVTAVVGVEAWY 209
G+ VFVLY + W+V FSF L ++ + P + TI + + TA++G++
Sbjct: 125 GILVFVLYFVQWLVGFSFFLFPGASFSLRSRYRP-QHIFFGATIFLLSVGTALLGLK--- 180
Query: 210 EPFLFN 215
E LFN
Sbjct: 181 EALLFN 186
>gi|63054830 cytochrome b-561 [Homo sapiens]
Length = 251
Score = 32.7 bits (73), Expect = 0.59
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 150 GVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQVTISFVYIVTAVVGVEAWY 209
G+ VFVLY + W+V FSF L ++ + P + TI + + TA++G++
Sbjct: 125 GILVFVLYFVQWLVGFSFFLFPGASFSLRSRYRP-QHIFFGATIFLLSVGTALLGLK--- 180
Query: 210 EPFLFN 215
E LFN
Sbjct: 181 EALLFN 186
>gi|63054828 cytochrome b-561 [Homo sapiens]
Length = 251
Score = 32.7 bits (73), Expect = 0.59
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 150 GVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQVTISFVYIVTAVVGVEAWY 209
G+ VFVLY + W+V FSF L ++ + P + TI + + TA++G++
Sbjct: 125 GILVFVLYFVQWLVGFSFFLFPGASFSLRSRYRP-QHIFFGATIFLLSVGTALLGLK--- 180
Query: 210 EPFLFN 215
E LFN
Sbjct: 181 EALLFN 186
>gi|33589846 membrane-associated ring finger (C3HC4) 6 [Homo
sapiens]
Length = 910
Score = 32.0 bits (71), Expect = 1.0
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 225 MIIGCALCVTLPMSLLNFFRSYKNNTLKLNSVYEAMVPLFSPCLLFILSTAWILWSP 281
++I +C+TLP+ + S+ T K++ +Y A L+ L T + W P
Sbjct: 644 LLIASLICLTLPVFAGRWLMSFWTGTAKIHELYTAACGLYVCWLTIRAVTVMVAWMP 700
>gi|119943110 cystinosis, nephropathic isoform 2 [Homo sapiens]
Length = 367
Score = 30.8 bits (68), Expect = 2.2
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 155 VLYLLLWVVLFSFILSHWEKYNTGILFLPW---GYDISQVTISFVYIVTAVVGVEAWYEP 211
V + L VVL I+ Y G + W G+ + +FV ++ A VGV W +
Sbjct: 206 VFFSLHAVVLTLIIIVQCCLYERGGQRVSWPAIGFLVLAWLFAFVTMIVAAVGVTTWLQ- 264
Query: 212 FLFNFLYRDLFTAMIIGCALCVTLPMSLLNFF 243
FLF F Y L ++ P + +NF+
Sbjct: 265 FLFCFSYIKLAVTLV------KYFPQAYMNFY 290
>gi|119943118 cystinosis, nephropathic isoform 1 [Homo sapiens]
Length = 400
Score = 30.8 bits (68), Expect = 2.2
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 155 VLYLLLWVVLFSFILSHWEKYNTGILFLPW---GYDISQVTISFVYIVTAVVGVEAWYEP 211
V + L VVL I+ Y G + W G+ + +FV ++ A VGV W +
Sbjct: 206 VFFSLHAVVLTLIIIVQCCLYERGGQRVSWPAIGFLVLAWLFAFVTMIVAAVGVTTWLQ- 264
Query: 212 FLFNFLYRDLFTAMIIGCALCVTLPMSLLNFF 243
FLF F Y L ++ P + +NF+
Sbjct: 265 FLFCFSYIKLAVTLV------KYFPQAYMNFY 290
>gi|9966787 solute carrier family 24 (sodium/potassium/calcium
exchanger), member 2 [Homo sapiens]
Length = 661
Score = 30.4 bits (67), Expect = 2.9
Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 7/158 (4%)
Query: 159 LLWVVLFSFILSHWEKY---NTGILFLPWGYDISQVTISFVYIVTAVVGVEAWYEPFLFN 215
+ W+ +FS+++ W GI G I S ++T+V+ L +
Sbjct: 507 ITWIAVFSYLMVWWAHQVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKG----LGD 562
Query: 216 FLYRDLFTAMIIGCALCVTLPMSLLNFFRSYKNNTLKLNSVYEAMVPLFSPCLLFILSTA 275
+ I + + LP L ++ + N ++ A+V LF L ILS A
Sbjct: 563 MAVSSSVGSNIFDITVGLPLPWLLYTVIHRFQPVAVSSNGLFCAIVLLFIMLLFVILSIA 622
Query: 276 WILWSPSDILELHPRVFYFMVGTAFANSTCQLIVCQMS 313
W + IL YF+ +++ C +S
Sbjct: 623 LCKWRMNKILGFIMFGLYFVFLVVSVLLEDRILTCPVS 660
>gi|221219017 olfactory receptor, family 52, subfamily N, member 4
[Homo sapiens]
Length = 321
Score = 30.4 bits (67), Expect = 2.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 175 YNTGILFLPWGYDISQVTISFVYIVTAVVGVEA 207
Y + L WG+DI +TIS+ I+ AVV + +
Sbjct: 200 YGLMVALLIWGFDILCITISYTMILRAVVSLSS 232
>gi|16418361 RFT1 homolog [Homo sapiens]
Length = 541
Score = 29.6 bits (65), Expect = 5.0
Identities = 51/233 (21%), Positives = 103/233 (44%), Gaps = 29/233 (12%)
Query: 148 STGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQVTISFVYIVTAVVGVEA 207
S+G+ + VL+ L+ VL +FIL K G++ V ++ +Y T + EA
Sbjct: 15 SSGLLLQVLFRLITFVLNAFILRFLSKEIVGVV---------NVRLTLLYSTTLFLAREA 65
Query: 208 WYEPFLFNFLYRDLFTAMIIGCALCVTLPMSLLNFFRSYKNNTLKLNSVYEAMVPLFSPC 267
+ L RD + + L +T+P+ + +L L ++ ++ + P
Sbjct: 66 FRRACLSGGTQRDWSQTLNL---LWLTVPLGVF--------WSLFLGWIWLQLLEVPDPN 114
Query: 268 LLFILSTAWILWSPSDILELHPRVFYFMVGTAFANSTCQLIVCQMSSTRCPTLNWLLVPL 327
++ +T +L+ S ++EL F+ + A A+ +L V S + + ++
Sbjct: 115 VVPHYATGVVLFGLSAVVELLGEPFWVL---AQAHMFVKLKVIAESLS---VILKSVLTA 168
Query: 328 FLVVLVVNLGVASYVESILLYTLTTAFTLAHIHYGVRVV-KQLSSHFQIYPFS 379
FLV+ + + G+ Y+ S+ TT L ++ Y +++ S+ Q P S
Sbjct: 169 FLVLWLPHWGL--YIFSLAQLFYTTVLVLCYVIYFTKLLGSPESTKLQTLPVS 219
>gi|4759128 solute carrier family 24 (sodium/potassium/calcium
exchanger), member 1 [Homo sapiens]
Length = 1099
Score = 29.3 bits (64), Expect = 6.5
Identities = 32/158 (20%), Positives = 60/158 (37%), Gaps = 7/158 (4%)
Query: 159 LLWVVLFSFILSHWEKY---NTGILFLPWGYDISQVTISFVYIVTAVVGVEAWYEPFLFN 215
++W+ +FS+++ W GI G I S ++T+V+ L +
Sbjct: 945 IMWIAMFSYLMVWWAHQVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKG----LGD 1000
Query: 216 FLYRDLFTAMIIGCALCVTLPMSLLNFFRSYKNNTLKLNSVYEAMVPLFSPCLLFILSTA 275
+ I + + +P L + + + N ++ A+V LF L I S A
Sbjct: 1001 MAVSSSVGSNIFDITVGLPVPWLLFSLINGLQPVPVSSNGLFCAIVLLFLMLLFVISSIA 1060
Query: 276 WILWSPSDILELHPRVFYFMVGTAFANSTCQLIVCQMS 313
W + IL + YF+ ++I C +S
Sbjct: 1061 SCKWRMNKILGFTMFLLYFVFLIISVMLEDRIISCPVS 1098
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.329 0.142 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,510,703
Number of Sequences: 37866
Number of extensions: 604633
Number of successful extensions: 1682
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1659
Number of HSP's gapped (non-prelim): 14
length of query: 397
length of database: 18,247,518
effective HSP length: 104
effective length of query: 293
effective length of database: 14,309,454
effective search space: 4192670022
effective search space used: 4192670022
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.