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Search of human proteins with 4885179
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4885179 defensin, alpha 3 preproprotein [Homo sapiens]
(94 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4885179 defensin, alpha 3 preproprotein [Homo sapiens] 195 7e-51
gi|4758146 defensin, alpha 1 preproprotein [Homo sapiens] 192 6e-50
gi|124248516 alpha-defensin 1 [Homo sapiens] 192 6e-50
gi|4503303 defensin, alpha 4 preproprotein [Homo sapiens] 82 7e-17
gi|10337585 defensin, alpha 5 preproprotein [Homo sapiens] 81 2e-16
gi|4503305 defensin, alpha 6 preproprotein [Homo sapiens] 74 2e-14
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 27 4.6
gi|169202788 PREDICTED: hypothetical protein [Homo sapiens] 26 6.0
gi|89034671 PREDICTED: hypothetical protein [Homo sapiens] 26 6.0
gi|51470873 PREDICTED: hypothetical protein [Homo sapiens] 26 6.0
gi|145580617 fucosyltransferase 11 (alpha (1,3) fucosyltransfera... 26 6.0
gi|29294649 dicer1 [Homo sapiens] 26 7.9
gi|29294651 dicer1 [Homo sapiens] 26 7.9
gi|111118978 ephrin receptor EphB2 isoform 1 precursor [Homo sap... 26 7.9
gi|21396504 ephrin receptor EphB2 isoform 2 precursor [Homo sapi... 26 7.9
gi|38201692 RAS p21 protein activator 3 [Homo sapiens] 26 7.9
>gi|4885179 defensin, alpha 3 preproprotein [Homo sapiens]
Length = 94
Score = 195 bits (495), Expect = 7e-51
Identities = 94/94 (100%), Positives = 94/94 (100%)
Query: 1 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS 60
MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS
Sbjct: 1 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS 60
Query: 61 RKNMDCYCRIPACIAGERRYGTCIYQGRLWAFCC 94
RKNMDCYCRIPACIAGERRYGTCIYQGRLWAFCC
Sbjct: 61 RKNMDCYCRIPACIAGERRYGTCIYQGRLWAFCC 94
>gi|4758146 defensin, alpha 1 preproprotein [Homo sapiens]
Length = 94
Score = 192 bits (487), Expect = 6e-50
Identities = 93/94 (98%), Positives = 93/94 (98%)
Query: 1 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS 60
MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS
Sbjct: 1 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS 60
Query: 61 RKNMDCYCRIPACIAGERRYGTCIYQGRLWAFCC 94
RKNM CYCRIPACIAGERRYGTCIYQGRLWAFCC
Sbjct: 61 RKNMACYCRIPACIAGERRYGTCIYQGRLWAFCC 94
>gi|124248516 alpha-defensin 1 [Homo sapiens]
Length = 94
Score = 192 bits (487), Expect = 6e-50
Identities = 93/94 (98%), Positives = 93/94 (98%)
Query: 1 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS 60
MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS
Sbjct: 1 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS 60
Query: 61 RKNMDCYCRIPACIAGERRYGTCIYQGRLWAFCC 94
RKNM CYCRIPACIAGERRYGTCIYQGRLWAFCC
Sbjct: 61 RKNMACYCRIPACIAGERRYGTCIYQGRLWAFCC 94
>gi|4503303 defensin, alpha 4 preproprotein [Homo sapiens]
Length = 97
Score = 82.4 bits (202), Expect = 7e-17
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 1 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS 60
MR +A+LAAILLVALQ +A PLQAR DE A EQ + ++ +S AWD+S A + GS
Sbjct: 1 MRIIALLAAILLVALQVRAGPLQARGDE-APGQEQRGPEDQDISISFAWDKSSALQVSGS 59
Query: 61 RKNMDCYCRIPACIAGERRYGTCIYQGRLWAFCC 94
+ M C CR+ C E R G C+ G + +CC
Sbjct: 60 TRGMVCSCRLVFCRRTELRVGNCLIGGVSFTYCC 93
>gi|10337585 defensin, alpha 5 preproprotein [Homo sapiens]
Length = 94
Score = 81.3 bits (199), Expect = 2e-16
Identities = 46/94 (48%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 1 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS 60
MRT+AILAAILLVALQAQAE LQ RADE A +Q D ++ +S A + A + GS
Sbjct: 1 MRTIAILAAILLVALQAQAESLQERADE-ATTQKQSGEDNQDLAISFAGNGLSALRTSGS 59
Query: 61 RKNMDCYCRIPACIAGERRYGTCIYQGRLWAFCC 94
+ CYCR C E G C GRL+ CC
Sbjct: 60 QARATCYCRTGRCATRESLSGVCEISGRLYRLCC 93
>gi|4503305 defensin, alpha 6 preproprotein [Homo sapiens]
Length = 100
Score = 74.3 bits (181), Expect = 2e-14
Identities = 46/100 (46%), Positives = 57/100 (57%), Gaps = 7/100 (7%)
Query: 1 MRTLAILAAILLVALQAQAEPLQARADEVAA------APEQIAADIPEVVVSLAWDESLA 54
MRTL IL A+LLVALQA+AEPLQA D + A A EQ A+ + VS A D S +
Sbjct: 1 MRTLTILTAVLLVALQAKAEPLQAEDDPLQAKAYEADAQEQRGANDQDFAVSFAEDASSS 60
Query: 55 PKHPGSRKNMDCYCRIPACIAGERRYGTCIYQGRLWAFCC 94
+ GS + C+CR +C + E YGTC G FCC
Sbjct: 61 LRALGSTRAFTCHCR-RSCYSTEYSYGTCTVMGINHRFCC 99
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 26.6 bits (57), Expect = 4.6
Identities = 21/51 (41%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 7 LAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKH 57
LAA AL A A P A AAAP A P V + A S AP H
Sbjct: 522 LAAAAAPALAAAAAPALA----AAAAPAPAPAAAPAVAAAPAAAASAAPSH 568
>gi|169202788 PREDICTED: hypothetical protein [Homo sapiens]
Length = 224
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 14/56 (25%)
Query: 39 DIPEVVVSLAW--------------DESLAPKHPGSRKNMDCYCRIPACIAGERRY 80
+ PEV+ L W DE LA HPG R + +P+ + G ++
Sbjct: 86 EAPEVMFELLWAGLELDVMGQLHIQDEELASTHPGRRLRLLLQHHVPSDLEGTEQW 141
>gi|89034671 PREDICTED: hypothetical protein [Homo sapiens]
Length = 224
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 14/56 (25%)
Query: 39 DIPEVVVSLAW--------------DESLAPKHPGSRKNMDCYCRIPACIAGERRY 80
+ PEV+ L W DE LA HPG R + +P+ + G ++
Sbjct: 86 EAPEVMFELLWAGLELDVMGQLHIQDEELASTHPGRRLRLLLQHHVPSDLEGTEQW 141
>gi|51470873 PREDICTED: hypothetical protein [Homo sapiens]
Length = 224
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 14/56 (25%)
Query: 39 DIPEVVVSLAW--------------DESLAPKHPGSRKNMDCYCRIPACIAGERRY 80
+ PEV+ L W DE LA HPG R + +P+ + G ++
Sbjct: 86 EAPEVMFELLWAGLELDVMGQLHIQDEELASTHPGRRLRLLLQHHVPSDLEGTEQW 141
>gi|145580617 fucosyltransferase 11 (alpha (1,3) fucosyltransferase)
[Homo sapiens]
Length = 492
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 37 AADIPEVVVSLAWDESLAPKHPGSRKNMDCYCRIPACIAGERR 79
A D+P V L W L P PG + ++ C AC+A R
Sbjct: 72 AGDLP---VLLWWSPGLFPHFPGDSERIE--CARGACVASRNR 109
>gi|29294649 dicer1 [Homo sapiens]
Length = 1922
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 50 DESLAPKHPGSRKNMDCYCR-IPACI 74
+E+ P PGS K CY + IP C+
Sbjct: 732 EETSVPGRPGSTKRRQCYPKAIPECL 757
>gi|29294651 dicer1 [Homo sapiens]
Length = 1922
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 50 DESLAPKHPGSRKNMDCYCR-IPACI 74
+E+ P PGS K CY + IP C+
Sbjct: 732 EETSVPGRPGSTKRRQCYPKAIPECL 757
>gi|111118978 ephrin receptor EphB2 isoform 1 precursor [Homo
sapiens]
Length = 986
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 16 QAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGSRKNMDCYCRIPACIA 75
+A +PL + +AP+ + + + E + L W P+ G R+++ +C +
Sbjct: 311 RADLDPLDMPCTTIPSAPQAVISSVNETSLMLEW---TPPRDSGGREDLVYNIICKSCGS 367
Query: 76 GERRYGTC 83
G G C
Sbjct: 368 GR---GAC 372
>gi|21396504 ephrin receptor EphB2 isoform 2 precursor [Homo
sapiens]
Length = 987
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 16 QAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGSRKNMDCYCRIPACIA 75
+A +PL + +AP+ + + + E + L W P+ G R+++ +C +
Sbjct: 311 RADLDPLDMPCTTIPSAPQAVISSVNETSLMLEW---TPPRDSGGREDLVYNIICKSCGS 367
Query: 76 GERRYGTC 83
G G C
Sbjct: 368 GR---GAC 372
>gi|38201692 RAS p21 protein activator 3 [Homo sapiens]
Length = 834
Score = 25.8 bits (55), Expect = 7.9
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 55 PKHPGSRKNMDCYCRI 70
P +PG K DCYC +
Sbjct: 25 PSYPGPSKMRDCYCTV 40
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.135 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,567,427
Number of Sequences: 37866
Number of extensions: 136129
Number of successful extensions: 433
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 422
Number of HSP's gapped (non-prelim): 16
length of query: 94
length of database: 18,247,518
effective HSP length: 65
effective length of query: 29
effective length of database: 15,786,228
effective search space: 457800612
effective search space used: 457800612
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.