Search of human proteins with 4826976

Search of human proteins with 4826976

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4826976 prenyl protein peptidase RCE1 isoform 1 [Homo
sapiens]
         (329 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4826976 prenyl protein peptidase RCE1 isoform 1 [Homo sapiens]     674   0.0  
gi|73858575 prenyl protein peptidase RCE1 isoform 2 [Homo sapiens]    464   e-131
gi|40254434 phosphodiesterase 3B [Homo sapiens]                        31   1.7  
gi|13699859 prostaglandin I2 (prostacyclin) synthase [Homo sapiens]    31   1.7  
gi|13899338 activin beta E [Homo sapiens]                              30   3.9  
gi|126131104 fibrocystin isoform 2 [Homo sapiens]                      29   5.0  
gi|126131102 fibrocystin isoform 1 [Homo sapiens]                      29   5.0  
gi|239754468 PREDICTED: hypothetical protein [Homo sapiens]            28   8.6  
gi|239749023 PREDICTED: hypothetical protein XP_002346884 [Homo ...    28   8.6  
gi|239743042 PREDICTED: hypothetical protein XP_002342725 [Homo ...    28   8.6  

>gi|4826976 prenyl protein peptidase RCE1 isoform 1 [Homo sapiens]
          Length = 329

 Score =  674 bits (1738), Expect = 0.0
 Identities = 329/329 (100%), Positives = 329/329 (100%)

Query: 1   MAALGGDGLRLLSVSRPERPPESAALGGLGPGLCCWVSVFSCLSLACSYVGSLYVWKSEL 60
           MAALGGDGLRLLSVSRPERPPESAALGGLGPGLCCWVSVFSCLSLACSYVGSLYVWKSEL
Sbjct: 1   MAALGGDGLRLLSVSRPERPPESAALGGLGPGLCCWVSVFSCLSLACSYVGSLYVWKSEL 60

Query: 61  PRDHPAVIKRRFTSVLVVSSLSPLCVLLWRELTGIQPGTSLLTLMGFRLEGIFPAALLPL 120
           PRDHPAVIKRRFTSVLVVSSLSPLCVLLWRELTGIQPGTSLLTLMGFRLEGIFPAALLPL
Sbjct: 61  PRDHPAVIKRRFTSVLVVSSLSPLCVLLWRELTGIQPGTSLLTLMGFRLEGIFPAALLPL 120

Query: 121 LLTMILFLGPLMQLSMDCPCDLADGLKVVLAPRSWARCLTDMRWLRNQVIAPLTEELVFR 180
           LLTMILFLGPLMQLSMDCPCDLADGLKVVLAPRSWARCLTDMRWLRNQVIAPLTEELVFR
Sbjct: 121 LLTMILFLGPLMQLSMDCPCDLADGLKVVLAPRSWARCLTDMRWLRNQVIAPLTEELVFR 180

Query: 181 ACMLPMLAPCMGLGPAVFTCPLFFGVAHFHHIIEQLRFRQSSVGNIFLSAAFQFSYTAVF 240
           ACMLPMLAPCMGLGPAVFTCPLFFGVAHFHHIIEQLRFRQSSVGNIFLSAAFQFSYTAVF
Sbjct: 181 ACMLPMLAPCMGLGPAVFTCPLFFGVAHFHHIIEQLRFRQSSVGNIFLSAAFQFSYTAVF 240

Query: 241 GAYTAFLFIRTGHLIGPVLCHSFCNYMGFPAVCAALEHPQRRPLLAGYALGVGLFLLLLQ 300
           GAYTAFLFIRTGHLIGPVLCHSFCNYMGFPAVCAALEHPQRRPLLAGYALGVGLFLLLLQ
Sbjct: 241 GAYTAFLFIRTGHLIGPVLCHSFCNYMGFPAVCAALEHPQRRPLLAGYALGVGLFLLLLQ 300

Query: 301 PLTDPKLYGSLPLCVLLERAGDSEAPLCS 329
           PLTDPKLYGSLPLCVLLERAGDSEAPLCS
Sbjct: 301 PLTDPKLYGSLPLCVLLERAGDSEAPLCS 329


>gi|73858575 prenyl protein peptidase RCE1 isoform 2 [Homo sapiens]
          Length = 225

 Score =  464 bits (1195), Expect = e-131
 Identities = 225/225 (100%), Positives = 225/225 (100%)

Query: 105 MGFRLEGIFPAALLPLLLTMILFLGPLMQLSMDCPCDLADGLKVVLAPRSWARCLTDMRW 164
           MGFRLEGIFPAALLPLLLTMILFLGPLMQLSMDCPCDLADGLKVVLAPRSWARCLTDMRW
Sbjct: 1   MGFRLEGIFPAALLPLLLTMILFLGPLMQLSMDCPCDLADGLKVVLAPRSWARCLTDMRW 60

Query: 165 LRNQVIAPLTEELVFRACMLPMLAPCMGLGPAVFTCPLFFGVAHFHHIIEQLRFRQSSVG 224
           LRNQVIAPLTEELVFRACMLPMLAPCMGLGPAVFTCPLFFGVAHFHHIIEQLRFRQSSVG
Sbjct: 61  LRNQVIAPLTEELVFRACMLPMLAPCMGLGPAVFTCPLFFGVAHFHHIIEQLRFRQSSVG 120

Query: 225 NIFLSAAFQFSYTAVFGAYTAFLFIRTGHLIGPVLCHSFCNYMGFPAVCAALEHPQRRPL 284
           NIFLSAAFQFSYTAVFGAYTAFLFIRTGHLIGPVLCHSFCNYMGFPAVCAALEHPQRRPL
Sbjct: 121 NIFLSAAFQFSYTAVFGAYTAFLFIRTGHLIGPVLCHSFCNYMGFPAVCAALEHPQRRPL 180

Query: 285 LAGYALGVGLFLLLLQPLTDPKLYGSLPLCVLLERAGDSEAPLCS 329
           LAGYALGVGLFLLLLQPLTDPKLYGSLPLCVLLERAGDSEAPLCS
Sbjct: 181 LAGYALGVGLFLLLLQPLTDPKLYGSLPLCVLLERAGDSEAPLCS 225


>gi|40254434 phosphodiesterase 3B [Homo sapiens]
          Length = 1112

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 35/129 (27%), Positives = 49/129 (37%), Gaps = 25/129 (19%)

Query: 28  GLGPGLCC---WVSVFSCLSLACSYVGSLYVWK------------SELPRDHPAVIKRRF 72
           G GPG  C   W+        AC Y+G   VW+            S  P   P     R 
Sbjct: 142 GPGPGRSCGSWWLLALP----ACCYLGDFLVWQWWSWPWGDGDAGSAAPHTPPEAAAGRL 197

Query: 73  TSVLVVSSLSPLCVLLW----RELTGIQPGTSLLTLMGFRLEGIFPAALLPLLLTMILFL 128
             +LV+S +  L  L      R    +    S +  + F   G  P+AL PLL  ++   
Sbjct: 198 --LLVLSCVGLLLTLAHPLRLRHCVLVLLLASFVWWVSFTSLGSLPSALRPLLSGLVGGA 255

Query: 129 GPLMQLSMD 137
           G L+ L +D
Sbjct: 256 GCLLALGLD 264


>gi|13699859 prostaglandin I2 (prostacyclin) synthase [Homo sapiens]
          Length = 500

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 117 LLPLLLTMILFLGPLMQLSMDCPCDLADGLKVVLAPRSWARCLTDMRWLRNQVI----AP 172
           LLP L    L +G       D  C +   L  +L+P   AR     +WL + ++      
Sbjct: 213 LLPKLARGSLSVG-----DKDHMCSVKSRLWKLLSPARLARRAHRSKWLESYLLHLEEMG 267

Query: 173 LTEELVFRACMLPMLAPCMGLGPAVFTCPLF 203
           ++EE+  RA +L + A    +GPA F   LF
Sbjct: 268 VSEEMQARALVLQLWATQGNMGPAAFWLLLF 298


>gi|13899338 activin beta E [Homo sapiens]
          Length = 350

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 10/93 (10%)

Query: 7   DGLRLLSVSRPERPPESAAL---------GGLGPGLCCWVSVFSCLSLACSYVGSLYVWK 57
           DGL L S  R   PP  AAL         G + PG    V  F+ ++ + S   SL  + 
Sbjct: 53  DGLHLTSRPRITHPPPQAALTRALRRLQPGSVAPGNGEEVISFATVTDSTSAYSSLLTFH 112

Query: 58  SELPRDHPAVIKRRFTSVLVVSSLSPLCVLLWR 90
              PR H     R +  VL       LC+ ++R
Sbjct: 113 LSTPRSHHLYHARLWLHVLPTLP-GTLCLRIFR 144


>gi|126131104 fibrocystin isoform 2 [Homo sapiens]
          Length = 3396

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 63   DHPAVIKRRFTSVLVVSSLSPLCVLLWRELTGIQPGTSLL 102
            D+ AV+ R FT    VSSL+P+ V L R ++ I  G +L+
Sbjct: 1091 DYSAVLPRAFT---YVSSLNPVIVTLSRNISNIAGGETLV 1127


>gi|126131102 fibrocystin isoform 1 [Homo sapiens]
          Length = 4074

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 63   DHPAVIKRRFTSVLVVSSLSPLCVLLWRELTGIQPGTSLL 102
            D+ AV+ R FT    VSSL+P+ V L R ++ I  G +L+
Sbjct: 1091 DYSAVLPRAFT---YVSSLNPVIVTLSRNISNIAGGETLV 1127


>gi|239754468 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 146

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 13/22 (59%), Positives = 14/22 (63%)

Query: 15  SRPERPPESAALGGLGPGLCCW 36
           SR ERP  +A L GL  G CCW
Sbjct: 89  SRGERPWLAAQLRGLQVGQCCW 110


>gi|239749023 PREDICTED: hypothetical protein XP_002346884 [Homo
           sapiens]
          Length = 159

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 13/22 (59%), Positives = 14/22 (63%)

Query: 15  SRPERPPESAALGGLGPGLCCW 36
           SR ERP  +A L GL  G CCW
Sbjct: 102 SRGERPWLAAQLRGLQVGQCCW 123


>gi|239743042 PREDICTED: hypothetical protein XP_002342725 [Homo
           sapiens]
          Length = 159

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 13/22 (59%), Positives = 14/22 (63%)

Query: 15  SRPERPPESAALGGLGPGLCCW 36
           SR ERP  +A L GL  G CCW
Sbjct: 102 SRGERPWLAAQLRGLQVGQCCW 123


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.330    0.144    0.472 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,593,749
Number of Sequences: 37866
Number of extensions: 606928
Number of successful extensions: 1721
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1714
Number of HSP's gapped (non-prelim): 11
length of query: 329
length of database: 18,247,518
effective HSP length: 103
effective length of query: 226
effective length of database: 14,347,320
effective search space: 3242494320
effective search space used: 3242494320
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.