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Search of human proteins with 4826860
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4826860 NHP2 non-histone chromosome protein 2-like 1 [Homo
sapiens]
(128 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|51317376 NHP2 non-histone chromosome protein 2-like 1 [Homo s... 251 8e-68
gi|4826860 NHP2 non-histone chromosome protein 2-like 1 [Homo sa... 251 8e-68
gi|8923444 nucleolar protein family A, member 2 isoform a [Homo ... 96 8e-21
gi|4506661 ribosomal protein L7a [Homo sapiens] 50 4e-07
gi|77812674 nucleolar protein family A, member 2 isoform b [Homo... 41 2e-04
gi|83779010 SECIS binding protein 2 [Homo sapiens] 32 0.14
gi|148222745 ribonuclease P/MRP 38 subunit [Homo sapiens] 30 0.51
gi|33859837 ribonuclease P/MRP 38 subunit [Homo sapiens] 30 0.51
gi|148238078 ribonuclease P/MRP 38 subunit [Homo sapiens] 30 0.51
gi|60685227 SECIS binding protein 2-like [Homo sapiens] 30 0.67
gi|157502193 proteasome 26S non-ATPase subunit 13 isoform 1 [Hom... 28 1.5
gi|30025026 osteopetrosis associated transmembrane protein 1 [Ho... 27 5.7
gi|239758001 PREDICTED: similar to facioscapulohumeral muscular ... 27 5.7
gi|61835172 fragile X mental retardation-related protein 1 isofo... 27 5.7
gi|61835164 fragile X mental retardation-related protein 1 isofo... 27 5.7
gi|61835148 fragile X mental retardation-related protein 1 isofo... 27 5.7
gi|62526031 neurochondrin isoform 2 [Homo sapiens] 26 7.4
gi|24307949 neurochondrin isoform 1 [Homo sapiens] 26 7.4
gi|62526029 neurochondrin isoform 1 [Homo sapiens] 26 7.4
gi|239758067 PREDICTED: similar to facioscapulohumeral muscular ... 26 9.7
gi|239752536 PREDICTED: hypothetical protein XP_002346688 [Homo ... 26 9.7
>gi|51317376 NHP2 non-histone chromosome protein 2-like 1 [Homo
sapiens]
Length = 128
Score = 251 bits (642), Expect = 8e-68
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60
MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA
Sbjct: 1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60
Query: 61 EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120
EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ
Sbjct: 61 EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120
Query: 121 QSIERLLV 128
QSIERLLV
Sbjct: 121 QSIERLLV 128
>gi|4826860 NHP2 non-histone chromosome protein 2-like 1 [Homo
sapiens]
Length = 128
Score = 251 bits (642), Expect = 8e-68
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60
MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA
Sbjct: 1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60
Query: 61 EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120
EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ
Sbjct: 61 EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120
Query: 121 QSIERLLV 128
QSIERLLV
Sbjct: 121 QSIERLLV 128
>gi|8923444 nucleolar protein family A, member 2 isoform a [Homo
sapiens]
Length = 153
Score = 95.9 bits (237), Expect = 8e-21
Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 2/120 (1%)
Query: 7 NPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEII 66
NP A PLA LT+KL ++++ KQ+R+G E K +N+G +V+A D P+E+
Sbjct: 32 NPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVY 91
Query: 67 LHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERL 126
HLP++CED+N+PYV++ SK LG A G RP C + +K + ++ + ++ L
Sbjct: 92 CHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRP--TCVIMVKPHEEYQEAYDECLEEVQSL 149
>gi|4506661 ribosomal protein L7a [Homo sapiens]
Length = 266
Score = 50.4 bits (119), Expect = 4e-07
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 35 LRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGR 91
LR G N T + ++ +V+A D +P+E+++ LP LC VPY ++ K LGR
Sbjct: 136 LRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGR 192
>gi|77812674 nucleolar protein family A, member 2 isoform b [Homo
sapiens]
Length = 90
Score = 41.2 bits (95), Expect = 2e-04
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 7 NPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRG 49
NP A PLA LT+KL ++++ KQ+R+G E K +N+G
Sbjct: 32 NPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKG 74
>gi|83779010 SECIS binding protein 2 [Homo sapiens]
Length = 854
Score = 32.0 bits (71), Expect = 0.14
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 33 KQLRKGANEATKTLNRGISEFIVMAADAEP------LEIILH--LPLLCEDKNVPYVFVR 84
++L G E K L + ++++ + E L+ LH + CE +N+P+VF
Sbjct: 671 RRLVLGLREVLKHLKLKKLKCVIISPNCEKIQSKGGLDDTLHTIIDYACE-QNIPFVFAL 729
Query: 85 SKQALGRACGVSRPVIACSVTIKEGSQ 111
+++ALGR+ + PV + +G+Q
Sbjct: 730 NRKALGRSLNKAVPVSVVGIFSYDGAQ 756
>gi|148222745 ribonuclease P/MRP 38 subunit [Homo sapiens]
Length = 283
Score = 30.0 bits (66), Expect = 0.51
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 17 HLTKKLLDLVQQSCNY------KQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLP 70
+L +K D QQ + KQL G NE T+ L R +++ +P I HL
Sbjct: 89 NLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLI 148
Query: 71 LLCEDKNVP 79
L ++VP
Sbjct: 149 QLSLSRSVP 157
>gi|33859837 ribonuclease P/MRP 38 subunit [Homo sapiens]
Length = 283
Score = 30.0 bits (66), Expect = 0.51
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 17 HLTKKLLDLVQQSCNY------KQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLP 70
+L +K D QQ + KQL G NE T+ L R +++ +P I HL
Sbjct: 89 NLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLI 148
Query: 71 LLCEDKNVP 79
L ++VP
Sbjct: 149 QLSLSRSVP 157
>gi|148238078 ribonuclease P/MRP 38 subunit [Homo sapiens]
Length = 283
Score = 30.0 bits (66), Expect = 0.51
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 17 HLTKKLLDLVQQSCNY------KQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLP 70
+L +K D QQ + KQL G NE T+ L R +++ +P I HL
Sbjct: 89 NLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLI 148
Query: 71 LLCEDKNVP 79
L ++VP
Sbjct: 149 QLSLSRSVP 157
>gi|60685227 SECIS binding protein 2-like [Homo sapiens]
Length = 1056
Score = 29.6 bits (65), Expect = 0.67
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 33 KQLRKGANEATKTLNRGISEFIVMAADAEPL-------EIILHLPLLCEDKNVPYVFVRS 85
++L G E TK + + ++++ + E + E + ++ + ++ +P+VF
Sbjct: 671 RRLVMGLREVTKHMKLNKIKCVIISPNCEKIQSKGGLDEALYNVIAMAREQEIPFVFALG 730
Query: 86 KQALGRACGVSRPV 99
++ALGR PV
Sbjct: 731 RKALGRCVNKLVPV 744
>gi|157502193 proteasome 26S non-ATPase subunit 13 isoform 1 [Homo
sapiens]
Length = 376
Score = 28.5 bits (62), Expect = 1.5
Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 10/109 (9%)
Query: 18 LTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKN 77
LT ++LD VQ C + + K ISEF +EIILH+ D N
Sbjct: 37 LTLQVLDFVQDPCFAQ-----GDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPN 91
Query: 78 VPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERL 126
V F+ + + VI C I LK I +Q + E +
Sbjct: 92 VALTFLEKTRE--KVKSSDEAVILCKTAI---GALKLNIGDLQVTKETI 135
>gi|30025026 osteopetrosis associated transmembrane protein 1 [Homo
sapiens]
Length = 334
Score = 26.6 bits (57), Expect = 5.7
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 28 QSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCED-KNVPYVFVRSK 86
Q+ NY ++ K EA KTL+ SE M E HL + ED N+
Sbjct: 213 QTKNYSEVCKNCREAYKTLSSLYSEMQKMNELENKAEPGTHLCIDVEDAMNITRKLWSRT 272
Query: 87 QALGRACGVSRPVIACSVTI 106
C + PVIA SV I
Sbjct: 273 FNCSVPCSDTVPVIAVSVFI 292
>gi|239758001 PREDICTED: similar to facioscapulohumeral muscular
dystrophy [Homo sapiens]
Length = 300
Score = 26.6 bits (57), Expect = 5.7
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 73 CEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQ 117
C ++N PY+ + +++ L +A G+ P + + SQL+Q Q
Sbjct: 131 CFERN-PYLGITTREQLAQAIGILEPRVQIWFQNERSSQLRQHRQ 174
>gi|61835172 fragile X mental retardation-related protein 1 isoform
c [Homo sapiens]
Length = 536
Score = 26.6 bits (57), Expect = 5.7
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 74 EDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERL 126
ED VP+VFV +K+++G + IA +KE QL+ + I + + ++
Sbjct: 244 EDGMVPFVFVGTKESIGNVQVLLEYHIA---YLKEVEQLRMERLQIDEQLRQI 293
>gi|61835164 fragile X mental retardation-related protein 1 isoform
b [Homo sapiens]
Length = 539
Score = 26.6 bits (57), Expect = 5.7
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 74 EDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERL 126
ED VP+VFV +K+++G + IA +KE QL+ + I + + ++
Sbjct: 329 EDGMVPFVFVGTKESIGNVQVLLEYHIA---YLKEVEQLRMERLQIDEQLRQI 378
>gi|61835148 fragile X mental retardation-related protein 1 isoform
a [Homo sapiens]
Length = 621
Score = 26.6 bits (57), Expect = 5.7
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 74 EDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERL 126
ED VP+VFV +K+++G + IA +KE QL+ + I + + ++
Sbjct: 329 EDGMVPFVFVGTKESIGNVQVLLEYHIA---YLKEVEQLRMERLQIDEQLRQI 378
>gi|62526031 neurochondrin isoform 2 [Homo sapiens]
Length = 712
Score = 26.2 bits (56), Expect = 7.4
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 48 RGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQA-LGRACG 94
RG+SE A DA E+ LPL VP R QA L R G
Sbjct: 206 RGLSEDFQKAEDASKFELCQLLPLFLPPTTVPPECYRDLQAGLARILG 253
>gi|24307949 neurochondrin isoform 1 [Homo sapiens]
Length = 729
Score = 26.2 bits (56), Expect = 7.4
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 48 RGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQA-LGRACG 94
RG+SE A DA E+ LPL VP R QA L R G
Sbjct: 223 RGLSEDFQKAEDASKFELCQLLPLFLPPTTVPPECYRDLQAGLARILG 270
>gi|62526029 neurochondrin isoform 1 [Homo sapiens]
Length = 729
Score = 26.2 bits (56), Expect = 7.4
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 48 RGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQA-LGRACG 94
RG+SE A DA E+ LPL VP R QA L R G
Sbjct: 223 RGLSEDFQKAEDASKFELCQLLPLFLPPTTVPPECYRDLQAGLARILG 270
>gi|239758067 PREDICTED: similar to facioscapulohumeral muscular
dystrophy [Homo sapiens]
Length = 468
Score = 25.8 bits (55), Expect = 9.7
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 73 CEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQ 114
C ++N PY+ + +++ L +A G+ P + + SQL+Q
Sbjct: 131 CFERN-PYLGITTREQLAQAIGILEPRVPIWFQNERSSQLRQ 171
>gi|239752536 PREDICTED: hypothetical protein XP_002346688 [Homo
sapiens]
Length = 236
Score = 25.8 bits (55), Expect = 9.7
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 73 CEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQ 114
C ++N PY+ + +++ L +A G+ P + + SQL+Q
Sbjct: 75 CFERN-PYLGITTREQLAQAIGILEPRVPIWFQNERSSQLRQ 115
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,120,208
Number of Sequences: 37866
Number of extensions: 142251
Number of successful extensions: 426
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 414
Number of HSP's gapped (non-prelim): 21
length of query: 128
length of database: 18,247,518
effective HSP length: 90
effective length of query: 38
effective length of database: 14,839,578
effective search space: 563903964
effective search space used: 563903964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.