Search of human proteins with 4759270

Search of human proteins with 4759270

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4759270 translin [Homo sapiens]
         (228 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4759270 translin [Homo sapiens]                                    447   e-126
gi|5174731 translin-associated factor X [Homo sapiens]                 65   4e-11
gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta ...    30   2.2  
gi|30794216 tripartite motif-containing 56 [Homo sapiens]              29   2.9  
gi|34304336 ring finger protein 8 isoform 2 [Homo sapiens]             28   6.5  
gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens]              28   6.5  
gi|7661690 coiled-coil domain containing 9 [Homo sapiens]              28   6.5  
gi|23943928 hypothetical protein LOC140680 [Homo sapiens]              28   6.5  
gi|4758646 kinesin family member 3B [Homo sapiens]                     28   8.5  
gi|71773415 annexin VI isoform 2 [Homo sapiens]                        28   8.5  
gi|81295809 pericentrin [Homo sapiens]                                 28   8.5  

>gi|4759270 translin [Homo sapiens]
          Length = 228

 Score =  447 bits (1151), Expect = e-126
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query: 1   MSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLK 60
           MSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLK
Sbjct: 1   MSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLK 60

Query: 61  AREHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVT 120
           AREHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVT
Sbjct: 61  AREHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVT 120

Query: 121 EILGIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAGDYSRPLHISTFINELDSG 180
           EILGIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAGDYSRPLHISTFINELDSG
Sbjct: 121 EILGIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAGDYSRPLHISTFINELDSG 180

Query: 181 FRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDLSIRGFNKETAAACVEK 228
           FRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDLSIRGFNKETAAACVEK
Sbjct: 181 FRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDLSIRGFNKETAAACVEK 228


>gi|5174731 translin-associated factor X [Homo sapiens]
          Length = 290

 Score = 65.5 bits (158), Expect = 4e-11
 Identities = 57/229 (24%), Positives = 97/229 (42%), Gaps = 22/229 (9%)

Query: 7   FVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFG 66
           F   Q  L A  D  E + K+ + +   ++  + LL  +      +DI     ++     
Sbjct: 39  FKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDI---LTESEIKLD 95

Query: 67  TVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAV------- 119
            V+  +  +  +   E  ++FH      LQ  V   +F  +++T +L++ + +       
Sbjct: 96  GVRQKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFT 155

Query: 120 TEILGIE--------PDREKG---FHLDVEDYLSGVLILASELSRLSVNSVTAGDYSRPL 168
           TE  G E         D++ G     +   DYL GV  L  EL R+ +NSV  GD   P 
Sbjct: 156 TEDNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPF 215

Query: 169 HISTFINELDSGFRLL-NLKNDSLRKRYDGLKYDVKKVEEVVYDLSIRG 216
            +S F+ ++  GF  + N     + K+   LK  + KVE   Y L +RG
Sbjct: 216 EVSQFLRQVYDGFSFIGNTGPYEVSKKLYTLKQSLAKVENACYALKVRG 264


>gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta [Homo
            sapiens]
          Length = 1983

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 14   LAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGA---GFQDIPKRCLKARE 63
            L  EQD    + ++ ++LEQT RE+   L+   Q A   G + + K   K RE
Sbjct: 1818 LKKEQDTSAHLERMKKTLEQTVRELQARLEEAEQAALRGGKKQVQKLEAKVRE 1870


>gi|30794216 tripartite motif-containing 56 [Homo sapiens]
          Length = 755

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 15/40 (37%), Positives = 25/40 (62%)

Query: 10  LQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGA 49
           L+  LA +Q++  ++R  V++ E+ ARE L  L+G  Q A
Sbjct: 263 LRALLAQKQEVLGQLRAHVEAAEEAARERLAELEGREQVA 302


>gi|34304336 ring finger protein 8 isoform 2 [Homo sapiens]
          Length = 448

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 3/73 (4%)

Query: 9   ELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTV 68
           +LQ  L AEQ  +++ R  V+ LE+T +E    LQG+    G +D+ ++  +A +    +
Sbjct: 294 DLQSQLCAEQ-AQQQAR--VEQLEKTFQEEEQHLQGLEIAQGEKDLKQQLAQALQEHWAL 350

Query: 69  KTHLTSLKTKFPA 81
              L   K  F A
Sbjct: 351 MEELNRSKKDFEA 363


>gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens]
          Length = 485

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 3/73 (4%)

Query: 9   ELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTV 68
           +LQ  L AEQ  +++ R  V+ LE+T +E    LQG+    G +D+ ++  +A +    +
Sbjct: 294 DLQSQLCAEQ-AQQQAR--VEQLEKTFQEEEQHLQGLEIAQGEKDLKQQLAQALQEHWAL 350

Query: 69  KTHLTSLKTKFPA 81
              L   K  F A
Sbjct: 351 MEELNRSKKDFEA 363


>gi|7661690 coiled-coil domain containing 9 [Homo sapiens]
          Length = 531

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 176 ELDSGFRLLNLKNDSLRKRYDGLKYDVKKVE----EVVYDLSIRGFNKETAAACVEK 228
           ELD     L  KN++L +RY  ++ D KK E     V      R   KE  A   EK
Sbjct: 16  ELDKRIEALRRKNEALIRRYQEIEEDRKKAELEGVAVTAPRKGRSVEKENVAVESEK 72


>gi|23943928 hypothetical protein LOC140680 [Homo sapiens]
          Length = 363

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 14/59 (23%), Positives = 33/59 (55%)

Query: 149 SELSRLSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEE 207
           S+L+R  + ++   + S  LH+   + + D+   ++++   S +KR   LK ++++ EE
Sbjct: 123 SKLNRELIETIQEMENSTTLHVRALLQQQDTLATIIDILEYSNKKRLQQLKSELQEWEE 181


>gi|4758646 kinesin family member 3B [Homo sapiens]
          Length = 747

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 3   VSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVH 46
           + ++F +LQ   A   D++EE  K  Q LEQT  E+   L+  H
Sbjct: 541 LKKLFSKLQAVKAEIHDLQEEHIKERQELEQTQNELTRELKLKH 584


>gi|71773415 annexin VI isoform 2 [Homo sapiens]
          Length = 667

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 15/148 (10%)

Query: 36  REILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVL 95
           R IL  L   H+  G +++ +    A+E   T     TSL+T+F      R + H R V 
Sbjct: 498 RRILISLATGHREEGGENLDQAREDAQEIADTPSGDKTSLETRFMTILCTRSYPHLRRVF 557

Query: 96  QRLVFLAAFVVYLETETLVT---REAVTEILGIEPDRE-----------KGFHLDVEDYL 141
           Q  + +  + V    +  ++   R+A   I+    ++            KG   D E  L
Sbjct: 558 QEFIKMTNYDVEHTIKKEMSGDVRDAFVAIVQSVKNKPLFFADKLYKSMKGAGTD-EKTL 616

Query: 142 SGVLILASELSRLSVNSVTAGDYSRPLH 169
           + +++  SE+  L++       Y + LH
Sbjct: 617 TRIMVSRSEIDLLNIRREFIEKYDKSLH 644


>gi|81295809 pericentrin [Homo sapiens]
          Length = 3336

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 13   FLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKTHL 72
            +L+  Q IREE R+ ++ L     E L     +HQ    Q++ K  LK R+H G +++  
Sbjct: 975  YLSEFQTIREEHRQALELLRADFEEQLWKKDSLHQTILTQELEK--LK-RKHEGELQSVR 1031

Query: 73   TSLKTKFPAE 82
              L+T+   E
Sbjct: 1032 DHLRTEVSTE 1041


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.137    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,305,089
Number of Sequences: 37866
Number of extensions: 285661
Number of successful extensions: 954
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 941
Number of HSP's gapped (non-prelim): 16
length of query: 228
length of database: 18,247,518
effective HSP length: 99
effective length of query: 129
effective length of database: 14,498,784
effective search space: 1870343136
effective search space used: 1870343136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.