Guide to the Human Genome
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Name: SLC25A40 Sequence: fasta or formatted (338aa) NCBI GI: 46094065
Description:

mitochondrial carrier family protein

Referenced in:

Mitochondria
Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         21           2
 C cysteine            2.4          8           1
 D aspartate           2.4          8           1
 E glutamate           4.4         15           2
 F phenylalanine       5.3         18           2
 G glycine             6.5         22           2
 H histidine           1.2          4           1
 I isoleucine          7.7         26           2
 K lysine              7.7         26           2
 L leucine             9.5         32           2
 M methionine          3.3         11           1
 N asparagine          3.6         12           2
 P proline             5.3         18           2
 Q glutamine           4.4         15           2
 R arginine            3.6         12           2
 S serine              7.1         24           1
 T threonine           6.2         21           1
 V valine              7.1         24           2
 W tryptophan          2.7          9           1
 Y tyrosine            3.6         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mitochondrial carrier family protein 
SLC25A39              0.486   solute carrier family 25, member 39 isoform b 
SLC25A39              0.484   solute carrier family 25, member 39 isoform a [Homo...
SLC25A24              0.113   solute carrier family 25 member 24 isoform 1 
SLC25A24              0.113   solute carrier family 25 member 24 isoform 2 
SLC25A28              0.113   solute carrier family 25, member 28 
SLC25A43              0.107   mitochondrial solute carrier protein 
SLC25A38              0.107   solute carrier family 25, member 38 
SLC25A23              0.105   solute carrier family 25, member 23 
SLC25A19              0.102   solute carrier family 25, member 19 
SLC25A19              0.102   solute carrier family 25, member 19 
SLC25A19              0.102   solute carrier family 25, member 19 
SLC25A42              0.101   solute carrier family 25, member 42 
LOC100292202          0.101   PREDICTED: similar to solute carrier family 25, mem...
LOC100292202          0.101   PREDICTED: similar to solute carrier family 25, mem...
SLC25A25              0.101   solute carrier family 25, member 25 isoform c 
SLC25A25              0.101   solute carrier family 25, member 25 isoform a 
SLC25A25              0.101   solute carrier family 25, member 25 isoform d 
SLC25A25              0.101   solute carrier family 25, member 25 isoform b 
SLC25A21              0.096   solute carrier family 25 (mitochondrial oxodicarboxy...
SLC25A37              0.096   solute carrier family 25, member 37 
SLC25A41              0.095   solute carrier family 25, member 41 
SLC25A14              0.093   solute carrier family 25, member 14 isoform UCP5L [Ho...
SLC25A14              0.093   solute carrier family 25, member 14 isoform UCP5S [H...
SLC25A13              0.093   solute carrier family 25, member 13 isoform 2 
SLC25A13              0.093   solute carrier family 25, member 13 isoform 1 [Homo...
SLC25A16              0.090   solute carrier family 25, member 16 
SLC25A36              0.089   solute carrier family 25, member 36 isoform a [Homo...
SLC25A20              0.089   carnitine/acylcarnitine translocase 
SLC25A12              0.086   solute carrier family 25, member 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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