Search of human proteins with 13129148

Search of human proteins with 13129148

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13129148 apolipoprotein O [Homo sapiens]
         (198 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13129148 apolipoprotein O [Homo sapiens]                           406   e-114
gi|116812610 apolipoprotein O-like [Homo sapiens]                     122   2e-28
gi|55741845 valyl-tRNA synthetase 2, mitochondrial [Homo sapiens]      30   1.0  
gi|20270387 hypothetical protein LOC159091 [Homo sapiens]              29   3.0  
gi|208022622 ubiquitin and ribosomal protein S27a precursor [Hom...    28   5.1  
gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo ...    28   5.1  
gi|222831647 KIAA1680 protein isoform 1 [Homo sapiens]                 28   6.7  
gi|5031977 nicotinamide phosphoribosyltransferase precursor [Hom...    27   8.7  
gi|38044112 restin isoform b [Homo sapiens]                            27   8.7  
gi|4506751 restin isoform a [Homo sapiens]                             27   8.7  
gi|20631980 DOM-3 homolog Z [Homo sapiens]                             27   8.7  
gi|205360949 fatty acid 2-hydroxylase [Homo sapiens]                   27   8.7  
gi|4503035 cAMP responsive element binding protein-like 2 [Homo ...    27   8.7  

>gi|13129148 apolipoprotein O [Homo sapiens]
          Length = 198

 Score =  406 bits (1044), Expect = e-114
 Identities = 198/198 (100%), Positives = 198/198 (100%)

Query: 1   MFKVIQRSVGPASLSLLTFKVYAAPKKDSPPKNSVKVDELSLYSVPEGQSKYVEEARSQL 60
           MFKVIQRSVGPASLSLLTFKVYAAPKKDSPPKNSVKVDELSLYSVPEGQSKYVEEARSQL
Sbjct: 1   MFKVIQRSVGPASLSLLTFKVYAAPKKDSPPKNSVKVDELSLYSVPEGQSKYVEEARSQL 60

Query: 61  EESISQLRHYCEPYTTWCQETYSQTKPKMQSLVQWGLDSYDYLQNAPPGFFPRLGVIGFA 120
           EESISQLRHYCEPYTTWCQETYSQTKPKMQSLVQWGLDSYDYLQNAPPGFFPRLGVIGFA
Sbjct: 61  EESISQLRHYCEPYTTWCQETYSQTKPKMQSLVQWGLDSYDYLQNAPPGFFPRLGVIGFA 120

Query: 121 GLIGLLLARGSKIKKLVYPPGFMGLAASLYYPQQAIVFAQVSGERLYDWGLRGYIVIEDL 180
           GLIGLLLARGSKIKKLVYPPGFMGLAASLYYPQQAIVFAQVSGERLYDWGLRGYIVIEDL
Sbjct: 121 GLIGLLLARGSKIKKLVYPPGFMGLAASLYYPQQAIVFAQVSGERLYDWGLRGYIVIEDL 180

Query: 181 WKENFQKPGNVKNSPGTK 198
           WKENFQKPGNVKNSPGTK
Sbjct: 181 WKENFQKPGNVKNSPGTK 198


>gi|116812610 apolipoprotein O-like [Homo sapiens]
          Length = 268

 Score =  122 bits (306), Expect = 2e-28
 Identities = 68/189 (35%), Positives = 108/189 (57%), Gaps = 2/189 (1%)

Query: 11  PASLSLLTFKVYAAPKKDSPPKNSVKVDELSLYSVPEGQSKYVEEARSQLEESISQLRHY 70
           PA L   +  V+AA +++S  K  VK ++L +Y+ P  QSKYVEE    L+   + +R  
Sbjct: 13  PAGLIYASVSVHAAKQEESK-KQLVKPEQLPIYTAPPLQSKYVEEQPGHLQMGFASIRTA 71

Query: 71  CEPYTTWCQETYSQTKPKMQSLVQWGLDSYDYLQNAPPGFFPRLGVIGFAGLIGLLLAR- 129
              Y  WC+  Y   K  +   VQ+G D+Y YL+N P  F P++GVI  +GL GL+ AR 
Sbjct: 72  TGCYIGWCKGVYVFVKNGIMDTVQFGKDAYVYLKNPPRDFLPKMGVITVSGLAGLVSARK 131

Query: 130 GSKIKKLVYPPGFMGLAASLYYPQQAIVFAQVSGERLYDWGLRGYIVIEDLWKENFQKPG 189
           GSK KK+ YP G   L A++ YP Q+++ A+V+ +++Y    + +  ++ LW ++ ++  
Sbjct: 132 GSKFKKITYPLGLATLGATVCYPVQSVIIAKVTAKKVYATSQQIFGAVKSLWTKSSKEES 191

Query: 190 NVKNSPGTK 198
             K    TK
Sbjct: 192 LPKPKEKTK 200


>gi|55741845 valyl-tRNA synthetase 2, mitochondrial [Homo sapiens]
          Length = 1063

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 12/103 (11%)

Query: 25  PKKDSPPKNSVKVDEL-SLYSVPEGQSKYVEEARSQLEESISQLRHYCEPYTTWCQETYS 83
           P+   PP  S+ V    S  S+   +   +E   S+++E +  LR          + TY 
Sbjct: 870 PRPGCPPAPSISVAPYPSACSLEHWRQPELERRFSRVQEVVQVLRAL--------RATYQ 921

Query: 84  QTKPKMQSLVQWGLDSYDYLQNAPPGFFPRLGVIGFAGLIGLL 126
            TK + + L+Q    S    Q     F   LG +G+ G +GLL
Sbjct: 922 LTKARPRVLLQ---SSEPGDQGLFEAFLEPLGTLGYCGAVGLL 961


>gi|20270387 hypothetical protein LOC159091 [Homo sapiens]
          Length = 152

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 15/55 (27%), Positives = 26/55 (47%)

Query: 136 LVYPPGFMGLAASLYYPQQAIVFAQVSGERLYDWGLRGYIVIEDLWKENFQKPGN 190
           L+ PP F G  + L+  +Q      ++ E + +W L+  I I   W+E  +   N
Sbjct: 64  LLPPPPFHGSISRLHQIKQEEAMDLINRETMSEWKLQSEIQISHSWEEGLKLNDN 118


>gi|208022622 ubiquitin and ribosomal protein S27a precursor [Homo
           sapiens]
          Length = 156

 Score = 28.1 bits (61), Expect = 5.1
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 20  KVYAAPKKDSPPKNSVKVDELSLYSVPEGQ--SKYVEEARS-QLEESISQLRHYCEPYTT 76
           K Y  PKK+   +  VK+  L  Y V E    S+   E  S +    +    H+   Y  
Sbjct: 83  KSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCG 142

Query: 77  WCQETYSQTKPK 88
            C  TY   KP+
Sbjct: 143 KCCLTYCFNKPE 154


>gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo
           sapiens]
          Length = 156

 Score = 28.1 bits (61), Expect = 5.1
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 20  KVYAAPKKDSPPKNSVKVDELSLYSVPEGQ--SKYVEEARS-QLEESISQLRHYCEPYTT 76
           K Y  PKK+   +  VK+  L  Y V E    S+   E  S +    +    H+   Y  
Sbjct: 83  KSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCG 142

Query: 77  WCQETYSQTKPK 88
            C  TY   KP+
Sbjct: 143 KCCLTYCFNKPE 154


>gi|222831647 KIAA1680 protein isoform 1 [Homo sapiens]
          Length = 900

 Score = 27.7 bits (60), Expect = 6.7
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 1   MFKVIQRSVGPASLSLLTFKVYAAPKKDSPPKNSVKVDELSLYSVPEGQSKYVEEARSQL 60
           M +V+Q S   +  S  T    +   ++  P   +  DE S+  +   Q K  +E  SQL
Sbjct: 638 MKRVLQESADMSPASSTTSLPVSPLTEEPVPFKDIMKDECSMLKL---QLKEKDELISQL 694

Query: 61  EESISQLRH 69
           +E + ++RH
Sbjct: 695 QEELGKVRH 703


>gi|5031977 nicotinamide phosphoribosyltransferase precursor [Homo
           sapiens]
          Length = 491

 Score = 27.3 bits (59), Expect = 8.7
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 17  LTFKVYAAPKKDSPPKNSVKVDELSLYSVPEGQSKYVEEARSQLEESISQLRH 69
           L   V+  P  D  P    K   LSL+  P G    +EE +  LEE    L H
Sbjct: 409 LGINVFKDPVAD--PNKRSKKGRLSLHRTPAGNFVTLEEGKGDLEEYGQDLLH 459


>gi|38044112 restin isoform b [Homo sapiens]
          Length = 1392

 Score = 27.3 bits (59), Expect = 8.7
 Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 16/112 (14%)

Query: 6    QRSVGPASLSLLTFKVYAAPKKDSPPKNSVKVDELSLYSVPEGQSKYVEEARSQLEESIS 65
            +R V    L L      A+  + S    +VK ++    S  E   K+ EE + +LE  +S
Sbjct: 909  ERDVEELQLKLTKANENASFLQKSIEDMTVKAEQ----SQQEAAKKH-EEEKKELERKLS 963

Query: 66   QLRHYCEPYTTWCQE-------TYSQTKPK----MQSLVQWGLDSYDYLQNA 106
             L    E     CQE         S+TK K    +Q+L +  LD+ D L+ A
Sbjct: 964  DLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKTLLDTEDKLKGA 1015


>gi|4506751 restin isoform a [Homo sapiens]
          Length = 1427

 Score = 27.3 bits (59), Expect = 8.7
 Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 16/112 (14%)

Query: 6    QRSVGPASLSLLTFKVYAAPKKDSPPKNSVKVDELSLYSVPEGQSKYVEEARSQLEESIS 65
            +R V    L L      A+  + S    +VK ++    S  E   K+ EE + +LE  +S
Sbjct: 944  ERDVEELQLKLTKANENASFLQKSIEDMTVKAEQ----SQQEAAKKH-EEEKKELERKLS 998

Query: 66   QLRHYCEPYTTWCQE-------TYSQTKPK----MQSLVQWGLDSYDYLQNA 106
             L    E     CQE         S+TK K    +Q+L +  LD+ D L+ A
Sbjct: 999  DLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKTLLDTEDKLKGA 1050


>gi|20631980 DOM-3 homolog Z [Homo sapiens]
          Length = 396

 Score = 27.3 bits (59), Expect = 8.7
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 51  KYVEEARSQLEESISQLRHYCEPYTTWCQETYSQTKPKMQSLVQW---GLDSYDYLQNAP 107
           +YV   R     S+    ++C  + ++ Q T  Q  P++  L  W   G  +    Q+AP
Sbjct: 313 EYVRNDRDGWNPSVCM--NFCAAFLSFAQSTVVQDDPRLVHLFSWEPGGPVTVSVHQDAP 370

Query: 108 PGFFP 112
             F P
Sbjct: 371 YAFLP 375


>gi|205360949 fatty acid 2-hydroxylase [Homo sapiens]
          Length = 372

 Score = 27.3 bits (59), Expect = 8.7
 Identities = 11/44 (25%), Positives = 23/44 (52%)

Query: 135 KLVYPPGFMGLAASLYYPQQAIVFAQVSGERLYDWGLRGYIVIE 178
           +LV+PP    L   ++Y    ++  +  G  ++  GL GY++ +
Sbjct: 269 RLVFPPVPASLVIGVFYLCMQLILPEAVGGTVFAGGLLGYVLYD 312


>gi|4503035 cAMP responsive element binding protein-like 2 [Homo
          sapiens]
          Length = 120

 Score = 27.3 bits (59), Expect = 8.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 51 KYVEEARSQLEESISQLRHYCEPYTTWC 78
          +Y+EE  S  E +I  LR   E Y  WC
Sbjct: 49 QYLEELVSSRERAICALREELEMYKQWC 76


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,520,760
Number of Sequences: 37866
Number of extensions: 367385
Number of successful extensions: 929
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 923
Number of HSP's gapped (non-prelim): 13
length of query: 198
length of database: 18,247,518
effective HSP length: 97
effective length of query: 101
effective length of database: 14,574,516
effective search space: 1472026116
effective search space used: 1472026116
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.