Guide to the Human Genome
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Name: ICT1 Sequence: fasta or formatted (206aa) NCBI GI: 4557657
Description:

immature colon carcinoma transcript 1

Referenced in:

Additional Conserved Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         16           2
 C cysteine            1.9          4           1
 D aspartate           5.3         11           1
 E glutamate           5.8         12           1
 F phenylalanine       1.5          3           1
 G glycine             4.4          9           2
 H histidine           2.4          5           1
 I isoleucine          6.3         13           1
 K lysine              7.8         16           1
 L leucine             8.3         17           2
 M methionine          1.9          4           1
 N asparagine          4.4          9           1
 P proline             5.3         11           3
 Q glutamine           4.4          9           1
 R arginine           11.2         23           2
 S serine              7.8         16           2
 T threonine           5.3         11           1
 V valine              4.4          9           1
 W tryptophan          1.9          4           1
 Y tyrosine            1.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   immature colon carcinoma transcript 1 
POLR3E                0.030   polymerase (RNA) III (DNA directed) polypeptide E [Ho...
C5orf42               0.015   hypothetical protein LOC65250 
MAZ                   0.013   MYC-associated zinc finger protein isoform 2 
MAZ                   0.013   MYC-associated zinc finger protein isoform 1 
MYO9A                 0.013   myosin IXA 
TAOK3                 0.010   TAO kinase 3 
CDC2L1                0.008   cell division cycle 2-like 1 (PITSLRE proteins) isof...
AHCTF1                0.008   transcription factor ELYS 
REST                  0.005   RE1-silencing transcription factor 
TUBB                  0.005   tubulin, beta 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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