Search of human proteins with 4506701

Search of human proteins with 4506701

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4506701 ribosomal protein S23 [Homo sapiens]
         (143 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4506701 ribosomal protein S23 [Homo sapiens]                       291   1e-79
gi|11056056 mitochondrial ribosomal protein S12 precursor [Homo ...    53   1e-07
gi|16950589 mitochondrial ribosomal protein S12 precursor [Homo ...    53   1e-07
gi|16950591 mitochondrial ribosomal protein S12 precursor [Homo ...    53   1e-07
gi|239755004 PREDICTED: hypothetical protein [Homo sapiens]            31   0.31 
gi|239743710 PREDICTED: hypothetical protein XP_002342931 [Homo ...    31   0.31 
gi|239749560 PREDICTED: hypothetical protein XP_002347086 [Homo ...    30   0.90 
gi|206597515 ArfGAP with RhoGAP domain, ankyrin repeat and PH do...    27   7.6  
gi|62241026 doublesex and mab-3 related transcription factor 1 [...    27   7.6  
gi|166706868 synaptopodin 2-like isoform a [Homo sapiens]              26   9.9  
gi|50301232 synaptopodin 2-like isoform b [Homo sapiens]               26   9.9  

>gi|4506701 ribosomal protein S23 [Homo sapiens]
          Length = 143

 Score =  291 bits (745), Expect = 1e-79
 Identities = 143/143 (100%), Positives = 143/143 (100%)

Query: 1   MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
           MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1   MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60

Query: 61  QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
           QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120

Query: 121 KVVKVANVSLLALYKGKKERPRS 143
           KVVKVANVSLLALYKGKKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143


>gi|11056056 mitochondrial ribosomal protein S12 precursor [Homo
           sapiens]
          Length = 138

 Score = 52.8 bits (125), Expect = 1e-07
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 8/88 (9%)

Query: 37  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 96
           K  P  G    KG+VL     + K+PNSA RKC RV+L   G++   F+P +G  + ++E
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104

Query: 97  NDEVLVAGFGRKGHAVGDIPGVRFKVVK 124
           +  VLV G GR      D+PGV+  VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127


>gi|16950589 mitochondrial ribosomal protein S12 precursor [Homo
           sapiens]
          Length = 138

 Score = 52.8 bits (125), Expect = 1e-07
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 8/88 (9%)

Query: 37  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 96
           K  P  G    KG+VL     + K+PNSA RKC RV+L   G++   F+P +G  + ++E
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104

Query: 97  NDEVLVAGFGRKGHAVGDIPGVRFKVVK 124
           +  VLV G GR      D+PGV+  VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127


>gi|16950591 mitochondrial ribosomal protein S12 precursor [Homo
           sapiens]
          Length = 138

 Score = 52.8 bits (125), Expect = 1e-07
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 8/88 (9%)

Query: 37  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 96
           K  P  G    KG+VL     + K+PNSA RKC RV+L   G++   F+P +G  + ++E
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104

Query: 97  NDEVLVAGFGRKGHAVGDIPGVRFKVVK 124
           +  VLV G GR      D+PGV+  VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127


>gi|239755004 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 558

 Score = 31.2 bits (69), Expect = 0.31
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 13  LRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAK--GIVLEKVGVEAKQPN 63
           L  HRR     D+  +  HLGTAL+ N F G S  +  G    + G  AK P+
Sbjct: 444 LPRHRRGTARPDQSERPGHLGTALRLNHFLGGSTEEWGGAAQGRQGGGAKSPS 496


>gi|239743710 PREDICTED: hypothetical protein XP_002342931 [Homo
           sapiens]
          Length = 522

 Score = 31.2 bits (69), Expect = 0.31
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 13  LRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAK--GIVLEKVGVEAKQPN 63
           L  HRR     D+  +  HLGTAL+ N F G S  +  G    + G  AK P+
Sbjct: 408 LPRHRRGTARPDQSERPGHLGTALRLNHFLGGSTEEWGGAAQGRQGGGAKSPS 460


>gi|239749560 PREDICTED: hypothetical protein XP_002347086 [Homo
           sapiens]
          Length = 443

 Score = 29.6 bits (65), Expect = 0.90
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 13  LRSHRRDQKWHDKQYKKAHLGTALKANPFGGAS 45
           L  HRR     D+  +  HLGTAL+ N F G S
Sbjct: 408 LPRHRRGTARPDQSERPGHLGTALRLNHFLGGS 440


>gi|206597515 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain
            1 isoform d [Homo sapiens]
          Length = 1133

 Score = 26.6 bits (57), Expect = 7.6
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 7    LRTARKLRSHRRDQKWHDKQYKKAHLGTALKANP 40
            LR  +++RSHR +++W  K   K +LG   K  P
Sbjct: 1005 LRLYKEVRSHRPEKEWPIKSL-KVYLGVKKKLRP 1037


>gi|62241026 doublesex and mab-3 related transcription factor 1
           [Homo sapiens]
          Length = 373

 Score = 26.6 bits (57), Expect = 7.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 3   KCRGLRTARKLRSHRRDQKWHDKQYKKAHL 32
           +CR    A  L+ H+R   W D Q KK +L
Sbjct: 78  RCRNHGYASPLKGHKRFCMWRDCQCKKCNL 107


>gi|166706868 synaptopodin 2-like isoform a [Homo sapiens]
          Length = 977

 Score = 26.2 bits (56), Expect = 9.9
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 40  PFGGASHAKGIVLEKVGVEAKQPN---SAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 96
           P  GA        +++ V A +      A R+  R Q+ + GK+ T   PN   L+ ++ 
Sbjct: 599 PGPGAPEPPSAREQRISVPAARTGILQEARRRGTRKQMFRPGKEETKNSPNPELLSLVQN 658

Query: 97  NDEVLVAGFGRKG 109
            DE   AG    G
Sbjct: 659 LDEKPRAGGAESG 671


>gi|50301232 synaptopodin 2-like isoform b [Homo sapiens]
          Length = 753

 Score = 26.2 bits (56), Expect = 9.9
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 40  PFGGASHAKGIVLEKVGVEAKQPN---SAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 96
           P  GA        +++ V A +      A R+  R Q+ + GK+ T   PN   L+ ++ 
Sbjct: 375 PGPGAPEPPSAREQRISVPAARTGILQEARRRGTRKQMFRPGKEETKNSPNPELLSLVQN 434

Query: 97  NDEVLVAGFGRKG 109
            DE   AG    G
Sbjct: 435 LDEKPRAGGAESG 447


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,266,021
Number of Sequences: 37866
Number of extensions: 203331
Number of successful extensions: 371
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 363
Number of HSP's gapped (non-prelim): 11
length of query: 143
length of database: 18,247,518
effective HSP length: 92
effective length of query: 51
effective length of database: 14,763,846
effective search space: 752956146
effective search space used: 752956146
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.