Search of human proteins with 4506633

Search of human proteins with 4506633

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4506633 ribosomal protein L31 isoform 1 [Homo sapiens]
         (125 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4506633 ribosomal protein L31 isoform 1 [Homo sapiens]             252   4e-68
gi|153252132 ribosomal protein L31 isoform 3 [Homo sapiens]           233   3e-62
gi|148746199 ribosomal protein L31 isoform 2 [Homo sapiens]           233   4e-62
gi|21687224 solute carrier family 30 (zinc transporter), member ...    34   0.025
gi|154689719 hypothetical protein LOC23231 [Homo sapiens]              30   0.62 
gi|212276104 leucine rich repeat (in FLII) interacting protein 1...    28   1.4  
gi|212276088 leucine rich repeat (in FLII) interacting protein 1...    28   1.4  
gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [H...    27   3.1  
gi|169214102 PREDICTED: similar to hCG92381 [Homo sapiens]             27   5.2  
gi|169214479 PREDICTED: similar to hCG92381 [Homo sapiens]             27   5.2  
gi|169213433 PREDICTED: hypothetical protein LOC646698 [Homo sap...    27   5.2  
gi|54144631 phosphatase and actin regulator 1 [Homo sapiens]           27   5.2  
gi|51873055 fibulin 2 isoform b precursor [Homo sapiens]               26   6.8  
gi|51873053 fibulin 2 isoform a precursor [Homo sapiens]               26   6.8  
gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo sapi...    26   8.9  
gi|34878787 ring finger protein 25 [Homo sapiens]                      26   8.9  

>gi|4506633 ribosomal protein L31 isoform 1 [Homo sapiens]
          Length = 125

 Score =  252 bits (644), Expect = 4e-68
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP 60
           MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP
Sbjct: 1   MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP 60

Query: 61  DVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTV 120
           DVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTV
Sbjct: 61  DVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTV 120

Query: 121 NVDEN 125
           NVDEN
Sbjct: 121 NVDEN 125


>gi|153252132 ribosomal protein L31 isoform 3 [Homo sapiens]
          Length = 121

 Score =  233 bits (594), Expect = 3e-62
 Identities = 115/116 (99%), Positives = 116/116 (100%)

Query: 1   MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP 60
           MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP
Sbjct: 1   MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP 60

Query: 61  DVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKN 116
           DVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFK+
Sbjct: 61  DVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKS 116


>gi|148746199 ribosomal protein L31 isoform 2 [Homo sapiens]
          Length = 128

 Score =  233 bits (593), Expect = 4e-62
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 1   MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP 60
           MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP
Sbjct: 1   MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP 60

Query: 61  DVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFK 115
           DVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFK
Sbjct: 61  DVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFK 115


>gi|21687224 solute carrier family 30 (zinc transporter), member 6
           [Homo sapiens]
          Length = 461

 Score = 34.3 bits (77), Expect = 0.025
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 43  PRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNED---EDSP 99
           P  + ++ K  ++E+ T D  ++ R N+  W  G  ++   + VR+ R  NE        
Sbjct: 260 PHVIGQLDKL-IREVSTLDGVLEVR-NEHFWTLGFGSLAGSVHVRIRRDANEQMVLAHVT 317

Query: 100 NKLYTLVTYVPVTTFKN 116
           N+LYTLV+ + V  FK+
Sbjct: 318 NRLYTLVSTLTVQIFKD 334


>gi|154689719 hypothetical protein LOC23231 [Homo sapiens]
          Length = 1132

 Score = 29.6 bits (65), Expect = 0.62
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 6   KGGEKKKGRSAINEVVTREYTINIHKRIHGVG-----FKKRAPRALKEIRKFAMKEMGTP 60
           KG   KK R    E++ +  +  +H+ ++G+G     FKK   +A K   K   +EMG P
Sbjct: 739 KGQGVKKNRRLALELMKKAASKGLHQAVNGLGWYYHKFKKNYAKAAKYWLK--AEEMGNP 796

Query: 61  D 61
           D
Sbjct: 797 D 797


>gi|212276104 leucine rich repeat (in FLII) interacting protein 1
          isoform 5 [Homo sapiens]
          Length = 752

 Score = 28.5 bits (62), Expect = 1.4
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 40 KRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVP 81
          KRA RA  E R+  MKE+      ++ R  K    KG RN+P
Sbjct: 30 KRAARA--EAREIRMKELERQQKEVEERPEKDFTEKGSRNMP 69


>gi|212276088 leucine rich repeat (in FLII) interacting protein 1
          isoform 2 [Homo sapiens]
          Length = 394

 Score = 28.5 bits (62), Expect = 1.4
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 40 KRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVP 81
          KRA RA  E R+  MKE+      ++ R  K    KG RN+P
Sbjct: 30 KRAARA--EAREIRMKELERQQKEVEERPEKDFTEKGSRNMP 69


>gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [Homo
           sapiens]
          Length = 1570

 Score = 27.3 bits (59), Expect = 3.1
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 15  SAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWA 74
           S+I E VT EY  +IH +  G GF       +   ++    E     + + TRL  + WA
Sbjct: 420 SSIEEDVTVEYGADIHSKEFGSGF------PVSNSKQNLSPEEKRQSLTVLTRLISSFWA 473

Query: 75  KGI 77
           + +
Sbjct: 474 QAV 476


>gi|169214102 PREDICTED: similar to hCG92381 [Homo sapiens]
          Length = 497

 Score = 26.6 bits (57), Expect = 5.2
 Identities = 14/44 (31%), Positives = 20/44 (45%)

Query: 8   GEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRK 51
           GEK       N+V T    +N HK IH      + P+ L+  R+
Sbjct: 432 GEKPYKCKDCNQVFTYRKNLNEHKLIHSGEKPYKCPKCLRAFRR 475


>gi|169214479 PREDICTED: similar to hCG92381 [Homo sapiens]
          Length = 497

 Score = 26.6 bits (57), Expect = 5.2
 Identities = 14/44 (31%), Positives = 20/44 (45%)

Query: 8   GEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRK 51
           GEK       N+V T    +N HK IH      + P+ L+  R+
Sbjct: 432 GEKPYKCKDCNQVFTYRKNLNEHKLIHSGEKPYKCPKCLRAFRR 475


>gi|169213433 PREDICTED: hypothetical protein LOC646698 [Homo
           sapiens]
          Length = 497

 Score = 26.6 bits (57), Expect = 5.2
 Identities = 14/44 (31%), Positives = 20/44 (45%)

Query: 8   GEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRK 51
           GEK       N+V T    +N HK IH      + P+ L+  R+
Sbjct: 432 GEKPYKCKDCNQVFTYRKNLNEHKLIHSGEKPYKCPKCLRAFRR 475


>gi|54144631 phosphatase and actin regulator 1 [Homo sapiens]
          Length = 580

 Score = 26.6 bits (57), Expect = 5.2
 Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 22/78 (28%)

Query: 35  GVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYR--------IRV 86
           G G  K  P  L EIR+        P V I+   NK        NVP+         +  
Sbjct: 348 GDGVTKAGPMGLPEIRQ-------VPTVVIECDDNK-------ENVPHESDYEDSSCLYT 393

Query: 87  RLSRKRNEDEDSPNKLYT 104
           R   +  EDED  + LYT
Sbjct: 394 REEEEEEEDEDDDSSLYT 411


>gi|51873055 fibulin 2 isoform b precursor [Homo sapiens]
          Length = 1184

 Score = 26.2 bits (56), Expect = 6.8
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 59  TPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNL 117
           +P   + T L  A W    R VP + +V L     E++  PN ++++    P  + K+L
Sbjct: 384 SPHNILSTSLPDAAWIPPTREVPRKPQV-LPHSHVEEDTDPNSVHSIPRSSPEGSTKDL 441


>gi|51873053 fibulin 2 isoform a precursor [Homo sapiens]
          Length = 1231

 Score = 26.2 bits (56), Expect = 6.8
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 59  TPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNL 117
           +P   + T L  A W    R VP + +V L     E++  PN ++++    P  + K+L
Sbjct: 384 SPHNILSTSLPDAAWIPPTREVPRKPQV-LPHSHVEEDTDPNSVHSIPRSSPEGSTKDL 441


>gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo
           sapiens]
          Length = 820

 Score = 25.8 bits (55), Expect = 8.9
 Identities = 17/59 (28%), Positives = 25/59 (42%)

Query: 7   GGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRID 65
           G E ++GR  I E   +   ++  K  +  G KKR        RKF  +   + D  ID
Sbjct: 227 GNEDEEGRQKIREEKDKSKELHAIKERYLGGIKKRRRTRHLNDRKFVFEWDASEDTSID 285


>gi|34878787 ring finger protein 25 [Homo sapiens]
          Length = 459

 Score = 25.8 bits (55), Expect = 8.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 78  RNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVP 110
           R  P+ I + L     ED+DS    +TLV  VP
Sbjct: 39  RTSPWEIYITLHPATAEDQDSQYVCFTLVLQVP 71


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,422,981
Number of Sequences: 37866
Number of extensions: 169200
Number of successful extensions: 470
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 461
Number of HSP's gapped (non-prelim): 16
length of query: 125
length of database: 18,247,518
effective HSP length: 90
effective length of query: 35
effective length of database: 14,839,578
effective search space: 519385230
effective search space used: 519385230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.