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Search of human proteins with 4506031
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506031 palmitoyl-protein thioesterase 1 isoform 1 precursor
[Homo sapiens]
(306 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4506031 palmitoyl-protein thioesterase 1 isoform 1 precursor ... 631 0.0
gi|217272890 palmitoyl-protein thioesterase 1 isoform 2 precurso... 337 1e-92
gi|18677774 palmitoyl-protein thioesterase 2 isoform a precursor... 79 7e-15
gi|20336251 palmitoyl-protein thioesterase 2 isoform b precursor... 79 7e-15
gi|35493952 ubiquitin protein ligase E3B [Homo sapiens] 32 0.92
gi|35493959 ubiquitin protein ligase E3B [Homo sapiens] 32 0.92
gi|30425524 hypothetical protein LOC339669 [Homo sapiens] 30 2.0
gi|33239440 zinc finger protein, Y-linked isoform 1 [Homo sapiens] 29 4.6
gi|223717965 zinc finger protein, Y-linked isoform 2 [Homo sapiens] 29 4.6
gi|5901962 MYST histone acetyltransferase 2 [Homo sapiens] 29 4.6
gi|83715968 sarcoma antigen NY-SAR-79 [Homo sapiens] 29 4.6
gi|34147522 chaperone, ABC1 activity of bc1 complex like precurs... 29 4.6
gi|55953063 SET domain containing 4 isoform c [Homo sapiens] 29 4.6
gi|13435127 TRAF3-interacting JNK-activating modulator [Homo sap... 29 4.6
gi|8393013 SET domain containing 4 isoform a [Homo sapiens] 29 4.6
>gi|4506031 palmitoyl-protein thioesterase 1 isoform 1 precursor
[Homo sapiens]
Length = 306
Score = 631 bits (1628), Expect = 0.0
Identities = 306/306 (100%), Positives = 306/306 (100%)
Query: 1 MASPGCLWLLAVALLPWTCASRALQHLDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEK 60
MASPGCLWLLAVALLPWTCASRALQHLDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEK
Sbjct: 1 MASPGCLWLLAVALLPWTCASRALQHLDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEK 60
Query: 61 KIPGIYVLSLEIGKTLMEDVENSFFLNVNSQVTTVCQALAKDPKLQQGYNAMGFSQGGQF 120
KIPGIYVLSLEIGKTLMEDVENSFFLNVNSQVTTVCQALAKDPKLQQGYNAMGFSQGGQF
Sbjct: 61 KIPGIYVLSLEIGKTLMEDVENSFFLNVNSQVTTVCQALAKDPKLQQGYNAMGFSQGGQF 120
Query: 121 LRAVAQRCPSPPMINLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYSKVVQERL 180
LRAVAQRCPSPPMINLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYSKVVQERL
Sbjct: 121 LRAVAQRCPSPPMINLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYSKVVQERL 180
Query: 181 VQAEYWHDPIKEDVYRNHSIFLADINQERGINESYKKNLMALKKFVMVKFLNDSIVDPVD 240
VQAEYWHDPIKEDVYRNHSIFLADINQERGINESYKKNLMALKKFVMVKFLNDSIVDPVD
Sbjct: 181 VQAEYWHDPIKEDVYRNHSIFLADINQERGINESYKKNLMALKKFVMVKFLNDSIVDPVD 240
Query: 241 SEWFGFYRSGQAKETIPLQETSLYTQDRLGLKEMDNAGQLVFLATEGDHLQLSEEWFYAH 300
SEWFGFYRSGQAKETIPLQETSLYTQDRLGLKEMDNAGQLVFLATEGDHLQLSEEWFYAH
Sbjct: 241 SEWFGFYRSGQAKETIPLQETSLYTQDRLGLKEMDNAGQLVFLATEGDHLQLSEEWFYAH 300
Query: 301 IIPFLG 306
IIPFLG
Sbjct: 301 IIPFLG 306
>gi|217272890 palmitoyl-protein thioesterase 1 isoform 2 precursor
[Homo sapiens]
Length = 203
Score = 337 bits (863), Expect = 1e-92
Identities = 168/185 (90%), Positives = 171/185 (92%), Gaps = 3/185 (1%)
Query: 122 RAVAQRCPSPPMINLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYSKVVQERLV 181
RA+ P P+ +I G GVFGLPRCPGESSHICDFIRKTLNAGAYSKVVQERLV
Sbjct: 22 RALQHLDPPAPLPLVIWHG---MGVFGLPRCPGESSHICDFIRKTLNAGAYSKVVQERLV 78
Query: 182 QAEYWHDPIKEDVYRNHSIFLADINQERGINESYKKNLMALKKFVMVKFLNDSIVDPVDS 241
QAEYWHDPIKEDVYRNHSIFLADINQERGINESYKKNLMALKKFVMVKFLNDSIVDPVDS
Sbjct: 79 QAEYWHDPIKEDVYRNHSIFLADINQERGINESYKKNLMALKKFVMVKFLNDSIVDPVDS 138
Query: 242 EWFGFYRSGQAKETIPLQETSLYTQDRLGLKEMDNAGQLVFLATEGDHLQLSEEWFYAHI 301
EWFGFYRSGQAKETIPLQETSLYTQDRLGLKEMDNAGQLVFLATEGDHLQLSEEWFYAHI
Sbjct: 139 EWFGFYRSGQAKETIPLQETSLYTQDRLGLKEMDNAGQLVFLATEGDHLQLSEEWFYAHI 198
Query: 302 IPFLG 306
IPFLG
Sbjct: 199 IPFLG 203
Score = 97.4 bits (241), Expect = 1e-20
Identities = 48/77 (62%), Positives = 54/77 (70%), Gaps = 15/77 (19%)
Query: 1 MASPGCLWLLAVALLPWTCASRALQHLDPPAPLPLVIWHGMG---------------DSC 45
MASPGCLWLLAVALLPWTCASRALQHLDPPAPLPLVIWHGMG D
Sbjct: 1 MASPGCLWLLAVALLPWTCASRALQHLDPPAPLPLVIWHGMGVFGLPRCPGESSHICDFI 60
Query: 46 CNPLSMGAIKKMVEKKI 62
L+ GA K+V++++
Sbjct: 61 RKTLNAGAYSKVVQERL 77
>gi|18677774 palmitoyl-protein thioesterase 2 isoform a precursor
[Homo sapiens]
Length = 302
Score = 78.6 bits (192), Expect = 7e-15
Identities = 81/292 (27%), Positives = 131/292 (44%), Gaps = 41/292 (14%)
Query: 4 PGCLWLLAVALLPWTCASRALQHLDPPAP-----LPLVIWHGMGDSCCNPLSMGAIKKMV 58
P LL + LP L L PAP P+++ HG+ DS S + + +
Sbjct: 10 PAAWVLLLLPFLP-------LLLLAAPAPHRASYKPVIVVHGLFDSS---YSFRHLLEYI 59
Query: 59 EKKIPGIYVLSLEI--GKTLMEDVENSFFLNVNSQVTTVCQALAKDPKLQQGYNAMGFSQ 116
+ PG V L++ G+ + + + V V +AK P QG + + +SQ
Sbjct: 60 NETHPGTVVTVLDLFDGRESLRPL----WEQVQGFREAVVPIMAKAP---QGVHLICYSQ 112
Query: 117 GGQFLRAVAQRCPSPPMINLISVGGQHQGVFGLPRCPGESSHIC----DFIRKTLNAGAY 172
GG RA+ + + IS+ G +G ++ ++ +R L Y
Sbjct: 113 GGLVCRALLSVMDDHNVDSFISLSSPQMGQYG------DTDYLKWLFPTSMRSNLYRICY 166
Query: 173 SKVVQERLVQAEYWHDPIKEDVYRNHSIFLADINQERGINES--YKKNLMALKKFVMVKF 230
S QE + YWHDP +D+Y N S FLA IN ER + ++KN + + V++
Sbjct: 167 SPWGQEFSI-CNYWHDPHHDDLYLNASSFLALINGERDHPNATVWRKNFLRVGHLVLIGG 225
Query: 231 LNDSIVDPVDSEWFGFYRSGQAKETI-PLQETSLYTQDRLGLKEMDNAGQLV 281
+D ++ P S +FGFY A ET+ ++E +Y +D GLK + G +V
Sbjct: 226 PDDGVITPWQSSFFGFY---DANETVLEMEEQLVYLRDSFGLKTLLARGAIV 274
>gi|20336251 palmitoyl-protein thioesterase 2 isoform b precursor
[Homo sapiens]
Length = 308
Score = 78.6 bits (192), Expect = 7e-15
Identities = 81/292 (27%), Positives = 131/292 (44%), Gaps = 41/292 (14%)
Query: 4 PGCLWLLAVALLPWTCASRALQHLDPPAP-----LPLVIWHGMGDSCCNPLSMGAIKKMV 58
P LL + LP L L PAP P+++ HG+ DS S + + +
Sbjct: 16 PAAWVLLLLPFLP-------LLLLAAPAPHRASYKPVIVVHGLFDSS---YSFRHLLEYI 65
Query: 59 EKKIPGIYVLSLEI--GKTLMEDVENSFFLNVNSQVTTVCQALAKDPKLQQGYNAMGFSQ 116
+ PG V L++ G+ + + + V V +AK P QG + + +SQ
Sbjct: 66 NETHPGTVVTVLDLFDGRESLRPL----WEQVQGFREAVVPIMAKAP---QGVHLICYSQ 118
Query: 117 GGQFLRAVAQRCPSPPMINLISVGGQHQGVFGLPRCPGESSHIC----DFIRKTLNAGAY 172
GG RA+ + + IS+ G +G ++ ++ +R L Y
Sbjct: 119 GGLVCRALLSVMDDHNVDSFISLSSPQMGQYG------DTDYLKWLFPTSMRSNLYRICY 172
Query: 173 SKVVQERLVQAEYWHDPIKEDVYRNHSIFLADINQERGINES--YKKNLMALKKFVMVKF 230
S QE + YWHDP +D+Y N S FLA IN ER + ++KN + + V++
Sbjct: 173 SPWGQEFSI-CNYWHDPHHDDLYLNASSFLALINGERDHPNATVWRKNFLRVGHLVLIGG 231
Query: 231 LNDSIVDPVDSEWFGFYRSGQAKETI-PLQETSLYTQDRLGLKEMDNAGQLV 281
+D ++ P S +FGFY A ET+ ++E +Y +D GLK + G +V
Sbjct: 232 PDDGVITPWQSSFFGFY---DANETVLEMEEQLVYLRDSFGLKTLLARGAIV 280
>gi|35493952 ubiquitin protein ligase E3B [Homo sapiens]
Length = 1068
Score = 31.6 bits (70), Expect = 0.92
Identities = 24/123 (19%), Positives = 55/123 (44%), Gaps = 10/123 (8%)
Query: 108 GYNAMGFSQGG---QFLRAVAQRCPSPPMINLISVGGQHQGVFGLPRCPGESSHI--CDF 162
G + G Q G +FL + +R P +NL + ++ P +++ +F
Sbjct: 719 GVDEAGIDQDGVFKEFLEEIIKRV-FDPALNLFKTTSGDERLYPSPTSYIHENYLQLFEF 777
Query: 163 IRKTLNAGAYSKVVQERLVQAEYWHDPIKEDVYRNHSIFLADINQERGINESYKKNLMAL 222
+ K L Y +V V + + + + +HS+F + +++ ++ + KNL ++
Sbjct: 778 VGKMLGKAVYEGIV----VDVPFASFFLSQLLGHHHSVFYSSVDELPSLDSEFYKNLTSI 833
Query: 223 KKF 225
K++
Sbjct: 834 KRY 836
>gi|35493959 ubiquitin protein ligase E3B [Homo sapiens]
Length = 1068
Score = 31.6 bits (70), Expect = 0.92
Identities = 24/123 (19%), Positives = 55/123 (44%), Gaps = 10/123 (8%)
Query: 108 GYNAMGFSQGG---QFLRAVAQRCPSPPMINLISVGGQHQGVFGLPRCPGESSHI--CDF 162
G + G Q G +FL + +R P +NL + ++ P +++ +F
Sbjct: 719 GVDEAGIDQDGVFKEFLEEIIKRV-FDPALNLFKTTSGDERLYPSPTSYIHENYLQLFEF 777
Query: 163 IRKTLNAGAYSKVVQERLVQAEYWHDPIKEDVYRNHSIFLADINQERGINESYKKNLMAL 222
+ K L Y +V V + + + + +HS+F + +++ ++ + KNL ++
Sbjct: 778 VGKMLGKAVYEGIV----VDVPFASFFLSQLLGHHHSVFYSSVDELPSLDSEFYKNLTSI 833
Query: 223 KKF 225
K++
Sbjct: 834 KRY 836
>gi|30425524 hypothetical protein LOC339669 [Homo sapiens]
Length = 195
Score = 30.4 bits (67), Expect = 2.0
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 165 KTLNAGAYSKVVQERLVQ-AEYWHDPIKEDVYRNHSIFLADINQERGINESYKKN 218
K+L +Y+ V E+ V+ E+WH +D+ R H ++N ++ + E Y +N
Sbjct: 133 KSLMKASYTPEVIEKSVRDLEHWHGRKTDDLGRWHQKNAMNLNLQKALEEKYGEN 187
>gi|33239440 zinc finger protein, Y-linked isoform 1 [Homo sapiens]
Length = 801
Score = 29.3 bits (64), Expect = 4.6
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 155 ESSHICDFIRKTLNAGAYSKVVQERLVQAEYWHDPIKEDVYRNHSIFLADINQERGINES 214
ES H+CD G +V + +V+AE DP+ D+ + + +AD E I+ S
Sbjct: 139 ESMHVCDI-------GHVEHMVHDSVVEAEIITDPLTSDIV-SEEVLVADCAPEAVIDAS 190
>gi|223717965 zinc finger protein, Y-linked isoform 2 [Homo sapiens]
Length = 724
Score = 29.3 bits (64), Expect = 4.6
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 155 ESSHICDFIRKTLNAGAYSKVVQERLVQAEYWHDPIKEDVYRNHSIFLADINQERGINES 214
ES H+CD G +V + +V+AE DP+ D+ + + +AD E I+ S
Sbjct: 113 ESMHVCDI-------GHVEHMVHDSVVEAEIITDPLTSDIV-SEEVLVADCAPEAVIDAS 164
>gi|5901962 MYST histone acetyltransferase 2 [Homo sapiens]
Length = 611
Score = 29.3 bits (64), Expect = 4.6
Identities = 30/150 (20%), Positives = 64/150 (42%), Gaps = 14/150 (9%)
Query: 127 RCPSPPMINLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYSKVVQERLVQAEYW 186
+CP+P +L + G+H+ F + CP + D + + A + K ++ER++ +
Sbjct: 184 KCPTPGCNSLGHLTGKHERHFSISGCPLYHNLSADECK--VRAQSRDKQIEERML--SHR 239
Query: 187 HDPIKEDVYRNHSIFLADINQERGINESYKKNLMALKKFVMVKFL---------NDSIVD 237
D R+ + + + + E KK L K K++ + +++
Sbjct: 240 QDDNNRHATRHQAPTERQLRYKEKVAELRKKRNSGLSKEQKEKYMEHRQTYGNTREPLLE 299
Query: 238 PVDSEW-FGFYRSGQAKETIPLQETSLYTQ 266
+ SE+ +R QA+ + L++ L Q
Sbjct: 300 NLTSEYDLDLFRRAQARASEDLEKLRLQGQ 329
>gi|83715968 sarcoma antigen NY-SAR-79 [Homo sapiens]
Length = 1079
Score = 29.3 bits (64), Expect = 4.6
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 253 KETIPLQETSLYTQDRLGLKEMDNAGQLVFLATEGDHLQLSE-EWFYAHI 301
KET+ + S Y+ + + EM+ QL LA E H QLSE E +YA I
Sbjct: 123 KETLKALQVSKYSLQKK-VSEMEQKVQLHLLAKEDYHKQLSEIEKYYATI 171
>gi|34147522 chaperone, ABC1 activity of bc1 complex like precursor
[Homo sapiens]
Length = 647
Score = 29.3 bits (64), Expect = 4.6
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 167 LNAGAYSKVVQERLVQAEYWHDPIKEDVYRNHSIFLADINQERGINESYKKNLMALKKFV 226
L GA ++V ++ L DP + S FL++ N ER + K ALK
Sbjct: 224 LGFGALAEVAKKSLRS----EDPSGKKAVLGSSPFLSEANAERIVRTLCKVRGAALKLGQ 279
Query: 227 MVKFLNDSIVDPVDSEWFGFYRSGQAKETIPLQETSLYTQDRLG 270
M+ +D+ ++P ++ F R Q+ + +PL++ + LG
Sbjct: 280 MLSIQDDAFINPHLAKI--FERVRQSADFMPLKQMMKTLNNDLG 321
>gi|55953063 SET domain containing 4 isoform c [Homo sapiens]
Length = 307
Score = 29.3 bits (64), Expect = 4.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 202 LADINQERGINESYKKNLMALKKFVMVKFLNDSIVDP 238
L ++ RG+NES+K + L+K++ + DS + P
Sbjct: 16 LCGSSESRGVNESHKSEFIELRKWLKARKFQDSNLAP 52
>gi|13435127 TRAF3-interacting JNK-activating modulator [Homo
sapiens]
Length = 531
Score = 29.3 bits (64), Expect = 4.6
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 211 INESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAKETIPLQETSLYT 265
+ E+ ++ L+ +K V+++ L +++ DS W G + K + E LYT
Sbjct: 181 LKEALQRELVLKQKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKLRSLENQLYT 235
>gi|8393013 SET domain containing 4 isoform a [Homo sapiens]
Length = 440
Score = 29.3 bits (64), Expect = 4.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 202 LADINQERGINESYKKNLMALKKFVMVKFLNDSIVDP 238
L ++ RG+NES+K + L+K++ + DS + P
Sbjct: 16 LCGSSESRGVNESHKSEFIELRKWLKARKFQDSNLAP 52
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,770,208
Number of Sequences: 37866
Number of extensions: 507281
Number of successful extensions: 1167
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1154
Number of HSP's gapped (non-prelim): 18
length of query: 306
length of database: 18,247,518
effective HSP length: 102
effective length of query: 204
effective length of database: 14,385,186
effective search space: 2934577944
effective search space used: 2934577944
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.