Search of human proteins with 4505693

Search of human proteins with 4505693

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4505693 pyruvate dehydrogenase kinase 4 [Homo sapiens]
         (411 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4505693 pyruvate dehydrogenase kinase 4 [Homo sapiens]             825   0.0  
gi|4505689 pyruvate dehydrogenase kinase 1 [Homo sapiens]             559   e-159
gi|19923736 pyruvate dehydrogenase kinase 2 [Homo sapiens]            551   e-157
gi|215422338 pyruvate dehydrogenase kinase 3 isoform 1 [Homo sap...   521   e-148
gi|4885545 pyruvate dehydrogenase kinase 3 isoform 2 [Homo sapiens]   521   e-148
gi|171906589 branched chain ketoacid dehydrogenase kinase isofor...   154   2e-37
gi|171906593 branched chain ketoacid dehydrogenase kinase isofor...   119   5e-27
gi|62953116 BTB (POZ) domain containing 11 isoform b [Homo sapiens]    30   5.2  
gi|65786661 BTB (POZ) domain containing 11 isoform a [Homo sapiens]    30   5.2  
gi|33469964 splicing factor 4 [Homo sapiens]                           29   6.8  
gi|30425394 hypothetical protein LOC128876 [Homo sapiens]              29   8.9  

>gi|4505693 pyruvate dehydrogenase kinase 4 [Homo sapiens]
          Length = 411

 Score =  825 bits (2131), Expect = 0.0
 Identities = 411/411 (100%), Positives = 411/411 (100%)

Query: 1   MKAARFVLRSAGSLNGAGLVPREVEHFSRYSPSPLSMKQLLDFGSENACERTSFAFLRQE 60
           MKAARFVLRSAGSLNGAGLVPREVEHFSRYSPSPLSMKQLLDFGSENACERTSFAFLRQE
Sbjct: 1   MKAARFVLRSAGSLNGAGLVPREVEHFSRYSPSPLSMKQLLDFGSENACERTSFAFLRQE 60

Query: 61  LPVRLANILKEIDILPTQLVNTSSVQLVKSWYIQSLMDLVEFHEKSPDDQKALSDFVDTL 120
           LPVRLANILKEIDILPTQLVNTSSVQLVKSWYIQSLMDLVEFHEKSPDDQKALSDFVDTL
Sbjct: 61  LPVRLANILKEIDILPTQLVNTSSVQLVKSWYIQSLMDLVEFHEKSPDDQKALSDFVDTL 120

Query: 121 IKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRMLMNQHILIF 180
           IKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRMLMNQHILIF
Sbjct: 121 IKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRMLMNQHILIF 180

Query: 181 SDSQTGNPSHIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIH 240
           SDSQTGNPSHIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIH
Sbjct: 181 SDSQTGNPSHIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIH 240

Query: 241 IVYVPSHLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPL 300
           IVYVPSHLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPL
Sbjct: 241 IVYVPSHLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPL 300

Query: 301 RIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDA 360
           RIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDA
Sbjct: 301 RIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDA 360

Query: 361 IIYLKALSSESIEKLPVFNKSAFKHYQMSSEADDWCIPSREPKNLAKEVAM 411
           IIYLKALSSESIEKLPVFNKSAFKHYQMSSEADDWCIPSREPKNLAKEVAM
Sbjct: 361 IIYLKALSSESIEKLPVFNKSAFKHYQMSSEADDWCIPSREPKNLAKEVAM 411


>gi|4505689 pyruvate dehydrogenase kinase 1 [Homo sapiens]
          Length = 436

 Score =  559 bits (1440), Expect = e-159
 Identities = 263/389 (67%), Positives = 330/389 (84%), Gaps = 3/389 (0%)

Query: 20  VPREVEHFSRYSPSPLSMKQLLDFGSENACERTSFAFLRQELPVRLANILKEIDILPTQL 79
           VP +V+ ++R+SPSPLSMKQ LDFGS NACE+TSF FLRQELPVRLANI+KEI +LP  L
Sbjct: 42  VPGQVDFYARFSPSPLSMKQFLDFGSVNACEKTSFMFLRQELPVRLANIMKEISLLPDNL 101

Query: 80  VNTSSVQLVKSWYIQSLMDLVEFHEKSPDDQKALSDFVDTLIKVRNRHHNVVPTMAQGII 139
           + T SVQLV+SWYIQSL +L++F +KS +D KA+ DF DT+I++RNRH++V+PTMAQG+I
Sbjct: 102 LRTPSVQLVQSWYIQSLQELLDFKDKSAEDAKAIYDFTDTVIRIRNRHNDVIPTMAQGVI 161

Query: 140 EYKDACTVDPVTNQNLQYFLDRFYMNRISTRMLMNQHILIFSDSQTGNPSH---IGSIDP 196
           EYK++  VDPVT+QN+QYFLDRFYM+RIS RML+NQH L+F     G+PSH   IGSI+P
Sbjct: 162 EYKESFGVDPVTSQNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGKGSPSHRKHIGSINP 221

Query: 197 NCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELF 256
           NC+V+ V++D +E +R LCD YY++SPEL+L ++N K P QPI +VYVPSHL+HM+FELF
Sbjct: 222 NCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELF 281

Query: 257 KNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPT 316
           KNAMRAT+EH  N+    PI+V V LG EDLT+K+SDRGGGVPLR IDRLF+Y YSTAP 
Sbjct: 282 KNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPR 341

Query: 317 PVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALSSESIEKLP 376
           P ++ SR  PLAGFGYGLPISRLYA+YFQGDL LYSL GYGTDA+IY+KALS++SIE+LP
Sbjct: 342 PRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALSTDSIERLP 401

Query: 377 VFNKSAFKHYQMSSEADDWCIPSREPKNL 405
           V+NK+A+KHY  + EADDWC+PSREPK++
Sbjct: 402 VYNKAAWKHYNTNHEADDWCVPSREPKDM 430


>gi|19923736 pyruvate dehydrogenase kinase 2 [Homo sapiens]
          Length = 407

 Score =  551 bits (1419), Expect = e-157
 Identities = 262/400 (65%), Positives = 332/400 (83%), Gaps = 5/400 (1%)

Query: 6   FVLRSAGSLNGAGLVPREVEHFSRYSPSPLSMKQLLDFGSENACERTSFAFLRQELPVRL 65
           + L    SL GA   P+ +EHFS++SPSPLSMKQ LDFGS NACE+TSF FLRQELPVRL
Sbjct: 5   WALLKNASLAGA---PKYIEHFSKFSPSPLSMKQFLDFGSSNACEKTSFTFLRQELPVRL 61

Query: 66  ANILKEIDILPTQLVNTSSVQLVKSWYIQSLMDLVEFHEKSPDDQKALSDFVDTLIKVRN 125
           ANI+KEI++LP ++++T SVQLV+SWY+QSL+D++EF +K P+D + LS F D L+ +RN
Sbjct: 62  ANIMKEINLLPDRVLSTPSVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIRN 121

Query: 126 RHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRMLMNQHILIFSDS-Q 184
           RH++VVPTMAQG++EYKD    DPV+NQN+QYFLDRFY++RIS RML+NQH LIF  S  
Sbjct: 122 RHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRMLINQHTLIFDGSTN 181

Query: 185 TGNPSHIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYV 244
             +P HIGSIDPNC+V  VV+DA++ +++LCD+YY++SP+L++ ++N     QPIH+VYV
Sbjct: 182 PAHPKHIGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYV 241

Query: 245 PSHLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIID 304
           PSHL+HMLFELFKNAMRATVE  E+   L PI+V+V LG+EDL+IK+SDRGGGVPLR I+
Sbjct: 242 PSHLYHMLFELFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIE 301

Query: 305 RLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYL 364
           RLFSY YSTAPTP    +   PLAGFGYGLPISRLYAKYFQGDL L+S+ G+GTDA+IYL
Sbjct: 302 RLFSYMYSTAPTP-QPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYL 360

Query: 365 KALSSESIEKLPVFNKSAFKHYQMSSEADDWCIPSREPKN 404
           KALS++S+E+LPV+NKSA++HYQ   EA DWC+PS EPKN
Sbjct: 361 KALSTDSVERLPVYNKSAWRHYQTIQEAGDWCVPSTEPKN 400


>gi|215422338 pyruvate dehydrogenase kinase 3 isoform 1 [Homo
           sapiens]
          Length = 415

 Score =  521 bits (1343), Expect = e-148
 Identities = 247/390 (63%), Positives = 319/390 (81%), Gaps = 2/390 (0%)

Query: 20  VPREVEHFSRYSPSPLSMKQLLDFGSENACERTSFAFLRQELPVRLANILKEIDILPTQL 79
           VP+++E +SR+SPSPLS+KQ LDFG +NACE+TS+ FLR+ELPVRLAN ++E+++LP  L
Sbjct: 12  VPKQIERYSRFSPSPLSIKQFLDFGRDNACEKTSYMFLRKELPVRLANTMREVNLLPDNL 71

Query: 80  VNTSSVQLVKSWYIQSLMDLVEFHEKSPDDQKALSDFVDTLIKVRNRHHNVVPTMAQGII 139
           +N  SV LV+SWY+QS ++L+E+  KSP+D + L +F+  LIKVRNRH++VVPTMAQG+I
Sbjct: 72  LNRPSVGLVQSWYMQSFLELLEYENKSPEDPQVLDNFLQVLIKVRNRHNDVVPTMAQGVI 131

Query: 140 EYKDACTVDPVTNQNLQYFLDRFYMNRISTRMLMNQHILIF-SDSQTGNPSHIGSIDPNC 198
           EYK+    DP  + N+QYFLDRFY NRIS RML+NQH L+F  D+   +P HIGSIDP C
Sbjct: 132 EYKEKFGFDPFISTNIQYFLDRFYTNRISFRMLINQHTLLFGGDTNPVHPKHIGSIDPTC 191

Query: 199 DVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKN 258
           +V  VV+DA+E ++MLC+QYYL +PEL++ + N K PD+PI +VYVPSHL HMLFELFKN
Sbjct: 192 NVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKN 251

Query: 259 AMRATVE-HQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTP 317
           +MRATVE +++ +     ++ +V LGKEDL+IKISD GGGVPLR IDRLF+Y YSTAP P
Sbjct: 252 SMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRP 311

Query: 318 VMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALSSESIEKLPV 377
            ++ +R APLAGFGYGLPISRLYA+YFQGDL LYS+ G GTDA+IYLKALSSES E+LPV
Sbjct: 312 SLEPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKALSSESFERLPV 371

Query: 378 FNKSAFKHYQMSSEADDWCIPSREPKNLAK 407
           FNKSA++HY+ + EADDW  PS EP++ +K
Sbjct: 372 FNKSAWRHYKTTPEADDWSNPSSEPRDASK 401


>gi|4885545 pyruvate dehydrogenase kinase 3 isoform 2 [Homo sapiens]
          Length = 406

 Score =  521 bits (1343), Expect = e-148
 Identities = 247/390 (63%), Positives = 319/390 (81%), Gaps = 2/390 (0%)

Query: 20  VPREVEHFSRYSPSPLSMKQLLDFGSENACERTSFAFLRQELPVRLANILKEIDILPTQL 79
           VP+++E +SR+SPSPLS+KQ LDFG +NACE+TS+ FLR+ELPVRLAN ++E+++LP  L
Sbjct: 12  VPKQIERYSRFSPSPLSIKQFLDFGRDNACEKTSYMFLRKELPVRLANTMREVNLLPDNL 71

Query: 80  VNTSSVQLVKSWYIQSLMDLVEFHEKSPDDQKALSDFVDTLIKVRNRHHNVVPTMAQGII 139
           +N  SV LV+SWY+QS ++L+E+  KSP+D + L +F+  LIKVRNRH++VVPTMAQG+I
Sbjct: 72  LNRPSVGLVQSWYMQSFLELLEYENKSPEDPQVLDNFLQVLIKVRNRHNDVVPTMAQGVI 131

Query: 140 EYKDACTVDPVTNQNLQYFLDRFYMNRISTRMLMNQHILIF-SDSQTGNPSHIGSIDPNC 198
           EYK+    DP  + N+QYFLDRFY NRIS RML+NQH L+F  D+   +P HIGSIDP C
Sbjct: 132 EYKEKFGFDPFISTNIQYFLDRFYTNRISFRMLINQHTLLFGGDTNPVHPKHIGSIDPTC 191

Query: 199 DVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKN 258
           +V  VV+DA+E ++MLC+QYYL +PEL++ + N K PD+PI +VYVPSHL HMLFELFKN
Sbjct: 192 NVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKN 251

Query: 259 AMRATVE-HQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTP 317
           +MRATVE +++ +     ++ +V LGKEDL+IKISD GGGVPLR IDRLF+Y YSTAP P
Sbjct: 252 SMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRP 311

Query: 318 VMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALSSESIEKLPV 377
            ++ +R APLAGFGYGLPISRLYA+YFQGDL LYS+ G GTDA+IYLKALSSES E+LPV
Sbjct: 312 SLEPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKALSSESFERLPV 371

Query: 378 FNKSAFKHYQMSSEADDWCIPSREPKNLAK 407
           FNKSA++HY+ + EADDW  PS EP++ +K
Sbjct: 372 FNKSAWRHYKTTPEADDWSNPSSEPRDASK 401


>gi|171906589 branched chain ketoacid dehydrogenase kinase isoform a
           [Homo sapiens]
          Length = 412

 Score =  154 bits (388), Expect = 2e-37
 Identities = 101/329 (30%), Positives = 168/329 (51%), Gaps = 33/329 (10%)

Query: 53  SFAFLRQELPVRLANILKEIDILPTQLVNTSSVQLVKSWYIQSLMDLVEFHEKSPDDQKA 112
           S  +L+QELPVR+A+ +K    LP  +    ++  V   YI++   L +F      DQ  
Sbjct: 90  SARYLQQELPVRIAHRIKGFRCLPFIIGCNPTILHVHELYIRAFQKLTDFPPIK--DQAD 147

Query: 113 LSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRML 172
            + +   + ++ + H +VV  +A+G+ E +     + +    ++YFLD+   +R+  RML
Sbjct: 148 EAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKL----VRYFLDKTLTSRLGIRML 203

Query: 173 MNQHILIFSDSQTGNPSHIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLT-QVN 231
              H+ +  D     P  +G I        +++   + +R LC+  Y ++P +++   V 
Sbjct: 204 ATHHLALHEDK----PDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVA 259

Query: 232 GKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKE-DLTIK 290
            +FP       ++P  L ++L EL KNAMRAT+E   + P   P  VI +   + DL I+
Sbjct: 260 ARFP-------FIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIR 312

Query: 291 ISDRGGGVPLRIIDRLFSYTYSTAPTPVMD--------------NSRNAPLAGFGYGLPI 336
           ISDRGGG+  + +DR+  Y ++TA     D               +++ P+ GFG+GLP 
Sbjct: 313 ISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGAQSGPMHGFGFGLPT 372

Query: 337 SRLYAKYFQGDLNLYSLSGYGTDAIIYLK 365
           SR YA+Y  G L L SL G GTD  + L+
Sbjct: 373 SRAYAEYLGGSLQLQSLQGIGTDVYLRLR 401


>gi|171906593 branched chain ketoacid dehydrogenase kinase isoform b
           [Homo sapiens]
          Length = 365

 Score =  119 bits (298), Expect = 5e-27
 Identities = 83/279 (29%), Positives = 143/279 (51%), Gaps = 20/279 (7%)

Query: 53  SFAFLRQELPVRLANILKEIDILPTQLVNTSSVQLVKSWYIQSLMDLVEFHEKSPDDQKA 112
           S  +L+QELPVR+A+ +K    LP  +    ++  V   YI++   L +F      DQ  
Sbjct: 90  SARYLQQELPVRIAHRIKGFRCLPFIIGCNPTILHVHELYIRAFQKLTDFPPIK--DQAD 147

Query: 113 LSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRML 172
            + +   + ++ + H +VV  +A+G+ E +     + +    ++YFLD+   +R+  RML
Sbjct: 148 EAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKL----VRYFLDKTLTSRLGIRML 203

Query: 173 MNQHILIFSDSQTGNPSHIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLT-QVN 231
              H+ +  D     P  +G I        +++   + +R LC+  Y ++P +++   V 
Sbjct: 204 ATHHLALHEDK----PDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVA 259

Query: 232 GKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKE-DLTIK 290
            +FP       ++P  L ++L EL KNAMRAT+E   + P   P  VI +   + DL I+
Sbjct: 260 ARFP-------FIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIR 312

Query: 291 ISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAG 329
           ISDRGGG+  + +DR+  Y ++TA     D  R +PL G
Sbjct: 313 ISDRGGGIAHKDLDRVMDYHFTTAEASTQD-PRISPLFG 350


>gi|62953116 BTB (POZ) domain containing 11 isoform b [Homo sapiens]
          Length = 641

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 11/125 (8%)

Query: 241 IVYVPSHLHHMLFELFKNA---MRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGG 297
           + +   H H  + +L  +A   +  +VEH E   S TP+++   +G  +L   + +RG  
Sbjct: 191 LTFAVLHGHIPVVQLLLDAGAKVEGSVEHGEENYSETPLQLAAAVGNFELVSLLLERGAD 250

Query: 298 VPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYA---KYFQGDLNLYSLS 354
               +I  ++    ST P   M++   A  A  G+     +L A   K     L+L  + 
Sbjct: 251 ---PLIGTMYRNGISTTPQGDMNSFSQA--AAHGHRNVFRKLLAQPEKEKSDILSLEEIL 305

Query: 355 GYGTD 359
             GTD
Sbjct: 306 AEGTD 310


>gi|65786661 BTB (POZ) domain containing 11 isoform a [Homo sapiens]
          Length = 1104

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 11/125 (8%)

Query: 241 IVYVPSHLHHMLFELFKNA---MRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGG 297
           + +   H H  + +L  +A   +  +VEH E   S TP+++   +G  +L   + +RG  
Sbjct: 654 LTFAVLHGHIPVVQLLLDAGAKVEGSVEHGEENYSETPLQLAAAVGNFELVSLLLERGAD 713

Query: 298 VPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYA---KYFQGDLNLYSLS 354
               +I  ++    ST P   M++   A  A  G+     +L A   K     L+L  + 
Sbjct: 714 ---PLIGTMYRNGISTTPQGDMNSFSQA--AAHGHRNVFRKLLAQPEKEKSDILSLEEIL 768

Query: 355 GYGTD 359
             GTD
Sbjct: 769 AEGTD 773


>gi|33469964 splicing factor 4 [Homo sapiens]
          Length = 645

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 24/97 (24%)

Query: 17  AGLVPREVEHFSRYSPSPLSMKQLLDFGSENACERTSFAFLRQELPVRLANILKEIDILP 76
           A LV R+V+     SPSPLS++ L   G E               PV L  +        
Sbjct: 399 AELVQRDVDA----SPSPLSVQDLKGLGYEKG------------KPVGLVGV-------- 434

Query: 77  TQLVNTSSVQLVKSWYIQSLMDLVEFHEKSPDDQKAL 113
           T+L +    QL +   +Q + D++  H+++  D + L
Sbjct: 435 TELSDAQKKQLKEQQEMQQMYDMIMQHKRAMQDMQLL 471


>gi|30425394 hypothetical protein LOC128876 [Homo sapiens]
          Length = 747

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 13/70 (18%)

Query: 200 VVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNA 259
           VVAVV D F    +LCD    SS               P++++    HL H L   +K  
Sbjct: 172 VVAVVMDIFTDMELLCDLMEASSRR-----------GVPVYLLLAQEHLRHFLEMCYK-- 218

Query: 260 MRATVEHQEN 269
           M    EH  N
Sbjct: 219 MDLNGEHLPN 228


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,854,438
Number of Sequences: 37866
Number of extensions: 664280
Number of successful extensions: 1389
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1367
Number of HSP's gapped (non-prelim): 11
length of query: 411
length of database: 18,247,518
effective HSP length: 105
effective length of query: 306
effective length of database: 14,271,588
effective search space: 4367105928
effective search space used: 4367105928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.