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Search of human proteins with 4505357
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4505357 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex,
4, 9kDa [Homo sapiens]
(81 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4505357 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4... 174 1e-44
gi|239753639 PREDICTED: similar to hCG2040339 [Homo sapiens] 138 1e-33
gi|239748188 PREDICTED: similar to hCG2040339 [Homo sapiens] 138 1e-33
gi|239742082 PREDICTED: hypothetical protein XP_002342432 [Homo ... 138 1e-33
gi|239755555 PREDICTED: similar to NADH dehydrogenase (ubiquinon... 120 3e-28
gi|239750055 PREDICTED: hypothetical protein XP_002347281 [Homo ... 120 3e-28
gi|239744362 PREDICTED: hypothetical protein XP_002343134 [Homo ... 120 3e-28
gi|10047138 NADH:ubiquinone oxidoreductase MLRQ subunit homolog ... 110 3e-25
gi|14165280 normal mucosa of esophagus specific 1 [Homo sapiens] 42 1e-04
gi|37694067 normal mucosa of esophagus specific 1 [Homo sapiens] 42 1e-04
gi|55741655 anoctamin 8 [Homo sapiens] 27 2.7
gi|42542383 solute carrier family 28, member 1 isoform 2 [Homo s... 27 3.5
gi|92859871 SMAD family member 6 isoform 1 [Homo sapiens] 26 7.8
>gi|4505357 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4,
9kDa [Homo sapiens]
Length = 81
Score = 174 bits (442), Expect = 1e-44
Identities = 81/81 (100%), Positives = 81/81 (100%)
Query: 1 MLRQIIGQAKKHPSLIPLFVFIGTGATGATLYLLRLALFNPDVCWDRNNPEPWNKLGPND 60
MLRQIIGQAKKHPSLIPLFVFIGTGATGATLYLLRLALFNPDVCWDRNNPEPWNKLGPND
Sbjct: 1 MLRQIIGQAKKHPSLIPLFVFIGTGATGATLYLLRLALFNPDVCWDRNNPEPWNKLGPND 60
Query: 61 QYKFYSVNVDYSKLKKERPDF 81
QYKFYSVNVDYSKLKKERPDF
Sbjct: 61 QYKFYSVNVDYSKLKKERPDF 81
>gi|239753639 PREDICTED: similar to hCG2040339 [Homo sapiens]
Length = 100
Score = 138 bits (347), Expect = 1e-33
Identities = 68/82 (82%), Positives = 70/82 (85%), Gaps = 1/82 (1%)
Query: 1 MLRQIIGQAKKHPSLIPLFVFIGTGATGATLYLLRLALFNPDVCWDR-NNPEPWNKLGPN 59
+L QII Q KKHPSL+PLFVFIG G TGA LYLL LALFNPDV WDR NN EPWNKL PN
Sbjct: 19 ILCQIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVNWDRKNNSEPWNKLDPN 78
Query: 60 DQYKFYSVNVDYSKLKKERPDF 81
DQYKFYSVNVDYSKLKKE PDF
Sbjct: 79 DQYKFYSVNVDYSKLKKEGPDF 100
>gi|239748188 PREDICTED: similar to hCG2040339 [Homo sapiens]
Length = 100
Score = 138 bits (347), Expect = 1e-33
Identities = 68/82 (82%), Positives = 70/82 (85%), Gaps = 1/82 (1%)
Query: 1 MLRQIIGQAKKHPSLIPLFVFIGTGATGATLYLLRLALFNPDVCWDR-NNPEPWNKLGPN 59
+L QII Q KKHPSL+PLFVFIG G TGA LYLL LALFNPDV WDR NN EPWNKL PN
Sbjct: 19 ILCQIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVNWDRKNNSEPWNKLDPN 78
Query: 60 DQYKFYSVNVDYSKLKKERPDF 81
DQYKFYSVNVDYSKLKKE PDF
Sbjct: 79 DQYKFYSVNVDYSKLKKEGPDF 100
>gi|239742082 PREDICTED: hypothetical protein XP_002342432 [Homo
sapiens]
Length = 100
Score = 138 bits (347), Expect = 1e-33
Identities = 68/82 (82%), Positives = 70/82 (85%), Gaps = 1/82 (1%)
Query: 1 MLRQIIGQAKKHPSLIPLFVFIGTGATGATLYLLRLALFNPDVCWDR-NNPEPWNKLGPN 59
+L QII Q KKHPSL+PLFVFIG G TGA LYLL LALFNPDV WDR NN EPWNKL PN
Sbjct: 19 ILCQIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVNWDRKNNSEPWNKLDPN 78
Query: 60 DQYKFYSVNVDYSKLKKERPDF 81
DQYKFYSVNVDYSKLKKE PDF
Sbjct: 79 DQYKFYSVNVDYSKLKKEGPDF 100
>gi|239755555 PREDICTED: similar to NADH dehydrogenase
(ubiquinone) 1 alpha subcomplex, 4 [Homo sapiens]
Length = 82
Score = 120 bits (300), Expect = 3e-28
Identities = 58/82 (70%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
Query: 1 MLRQIIGQAKKHPSLIPLFVFIGTGATGATLYLLRLALFNPDVCWDRNN-PEPWNKLGPN 59
M Q + Q KK+PSLI F+FIG G+TGA Y+L LA F+PDV W RNN PEPWNKL PN
Sbjct: 1 MPHQTLSQTKKNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPN 60
Query: 60 DQYKFYSVNVDYSKLKKERPDF 81
DQYK YSVNVDYSKLKKE PDF
Sbjct: 61 DQYKSYSVNVDYSKLKKEGPDF 82
>gi|239750055 PREDICTED: hypothetical protein XP_002347281 [Homo
sapiens]
Length = 82
Score = 120 bits (300), Expect = 3e-28
Identities = 58/82 (70%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
Query: 1 MLRQIIGQAKKHPSLIPLFVFIGTGATGATLYLLRLALFNPDVCWDRNN-PEPWNKLGPN 59
M Q + Q KK+PSLI F+FIG G+TGA Y+L LA F+PDV W RNN PEPWNKL PN
Sbjct: 1 MPHQTLSQTKKNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPN 60
Query: 60 DQYKFYSVNVDYSKLKKERPDF 81
DQYK YSVNVDYSKLKKE PDF
Sbjct: 61 DQYKSYSVNVDYSKLKKEGPDF 82
>gi|239744362 PREDICTED: hypothetical protein XP_002343134 [Homo
sapiens]
Length = 82
Score = 120 bits (300), Expect = 3e-28
Identities = 58/82 (70%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
Query: 1 MLRQIIGQAKKHPSLIPLFVFIGTGATGATLYLLRLALFNPDVCWDRNN-PEPWNKLGPN 59
M Q + Q KK+PSLI F+FIG G+TGA Y+L LA F+PDV W RNN PEPWNKL PN
Sbjct: 1 MPHQTLSQTKKNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPN 60
Query: 60 DQYKFYSVNVDYSKLKKERPDF 81
DQYK YSVNVDYSKLKKE PDF
Sbjct: 61 DQYKSYSVNVDYSKLKKEGPDF 82
>gi|10047138 NADH:ubiquinone oxidoreductase MLRQ subunit homolog
[Homo sapiens]
Length = 87
Score = 110 bits (274), Expect = 3e-25
Identities = 50/75 (66%), Positives = 58/75 (77%), Gaps = 1/75 (1%)
Query: 8 QAKKHPSLIPLFVFIGTGATGATLYLLRLALFNPDVCWDR-NNPEPWNKLGPNDQYKFYS 66
Q K+HP +IP+ I G A LYLLRLAL +PDVCWDR NNPEPWN+L PNDQYKF +
Sbjct: 13 QIKRHPGIIPMIGLICLGMGSAALYLLRLALRSPDVCWDRKNNPEPWNRLSPNDQYKFLA 72
Query: 67 VNVDYSKLKKERPDF 81
V+ DY KLKK+RPDF
Sbjct: 73 VSTDYKKLKKDRPDF 87
>gi|14165280 normal mucosa of esophagus specific 1 [Homo sapiens]
Length = 83
Score = 42.0 bits (97), Expect = 1e-04
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 11 KHPSLIPLFVFIGTGATGATLYLLRLALFNPDVCWDRN-NPEPWNKLGPNDQYKFYSVNV 69
K LIPL VF+ A GA+ + + +L+ DV DR NPEPW + P K ++N
Sbjct: 9 KRKELIPLVVFMTVAAGGASSFAV-YSLWKTDVILDRKKNPEPWETVDPTVPQKLITINQ 67
Query: 70 DYSKLKK 76
+ +++
Sbjct: 68 QWKPIEE 74
>gi|37694067 normal mucosa of esophagus specific 1 [Homo sapiens]
Length = 83
Score = 42.0 bits (97), Expect = 1e-04
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 11 KHPSLIPLFVFIGTGATGATLYLLRLALFNPDVCWDRN-NPEPWNKLGPNDQYKFYSVNV 69
K LIPL VF+ A GA+ + + +L+ DV DR NPEPW + P K ++N
Sbjct: 9 KRKELIPLVVFMTVAAGGASSFAV-YSLWKTDVILDRKKNPEPWETVDPTVPQKLITINQ 67
Query: 70 DYSKLKK 76
+ +++
Sbjct: 68 QWKPIEE 74
>gi|55741655 anoctamin 8 [Homo sapiens]
Length = 1232
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 18 LFVFIGTGATGATLYLLRLALFNPDVCWDRNNPEPWNKLGPNDQYKFYSVNVDYSKLKKE 77
L+ F T + + ALFN V W E W + G YK+ +++ +++
Sbjct: 269 LYTFTEADQTSRDVSCVVFALFN--VIWSTLFLEEWKRRGAELAYKWGTLDSPGEAVEEP 326
Query: 78 RPDF 81
RP F
Sbjct: 327 RPQF 330
>gi|42542383 solute carrier family 28, member 1 isoform 2 [Homo
sapiens]
Length = 175
Score = 26.9 bits (58), Expect = 3.5
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 45 WDRNNPEPWNKLGPN 59
W + +P PW+K GPN
Sbjct: 151 WFKRDPRPWSKEGPN 165
>gi|92859871 SMAD family member 6 isoform 1 [Homo sapiens]
Length = 496
Score = 25.8 bits (55), Expect = 7.8
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 43 VCWDRNNPEPWNKLGPNDQYK 63
+C + P P+++L P D+YK
Sbjct: 269 LCGPESPPPPYSRLSPRDEYK 289
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.142 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,366,263
Number of Sequences: 37866
Number of extensions: 137001
Number of successful extensions: 242
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 13
length of query: 81
length of database: 18,247,518
effective HSP length: 53
effective length of query: 28
effective length of database: 16,240,620
effective search space: 454737360
effective search space used: 454737360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.