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Search of human proteins with 13124770
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13124770 vitamin K epoxide reductase complex, subunit 1
isoform 1 [Homo sapiens]
(163 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13124770 vitamin K epoxide reductase complex, subunit 1 isofo... 334 2e-92
gi|46309463 vitamin K epoxide reductase complex, subunit 1-like ... 162 9e-41
gi|45827739 vitamin K epoxide reductase complex, subunit 1 isofo... 121 2e-28
gi|239752990 PREDICTED: hypothetical protein [Homo sapiens] 29 1.6
gi|239741428 PREDICTED: hypothetical protein [Homo sapiens] 29 1.6
gi|239747554 PREDICTED: hypothetical protein [Homo sapiens] 29 2.1
gi|13540547 solute carrier family 2 member 10 [Homo sapiens] 28 2.7
gi|239582720 ATG9 autophagy related 9 homolog B [Homo sapiens] 28 4.6
gi|239753196 PREDICTED: hypothetical protein [Homo sapiens] 27 7.8
gi|239747770 PREDICTED: hypothetical protein XP_002348262 [Homo ... 27 7.8
gi|239741636 PREDICTED: hypothetical protein XP_002342253 [Homo ... 27 7.8
gi|91206396 taste receptor, type 1, member 3 [Homo sapiens] 27 7.8
>gi|13124770 vitamin K epoxide reductase complex, subunit 1 isoform
1 [Homo sapiens]
Length = 163
Score = 334 bits (856), Expect = 2e-92
Identities = 163/163 (100%), Positives = 163/163 (100%)
Query: 1 MGSTWGSPGWVRLALCLTGLVLSLYALHVKAARARDRDYRALCDVGTAISCSRVFSSRWG 60
MGSTWGSPGWVRLALCLTGLVLSLYALHVKAARARDRDYRALCDVGTAISCSRVFSSRWG
Sbjct: 1 MGSTWGSPGWVRLALCLTGLVLSLYALHVKAARARDRDYRALCDVGTAISCSRVFSSRWG 60
Query: 61 RGFGLVEHVLGQDSILNQSNSIFGCIFYTLQLLLGCLRTRWASVLMLLSSLVSLAGSVYL 120
RGFGLVEHVLGQDSILNQSNSIFGCIFYTLQLLLGCLRTRWASVLMLLSSLVSLAGSVYL
Sbjct: 61 RGFGLVEHVLGQDSILNQSNSIFGCIFYTLQLLLGCLRTRWASVLMLLSSLVSLAGSVYL 120
Query: 121 AWILFFVLYDFCIVCITTYAINVSLMWLSFRKVQEPQGKAKRH 163
AWILFFVLYDFCIVCITTYAINVSLMWLSFRKVQEPQGKAKRH
Sbjct: 121 AWILFFVLYDFCIVCITTYAINVSLMWLSFRKVQEPQGKAKRH 163
>gi|46309463 vitamin K epoxide reductase complex, subunit 1-like 1
[Homo sapiens]
Length = 176
Score = 162 bits (411), Expect = 9e-41
Identities = 72/149 (48%), Positives = 111/149 (74%), Gaps = 3/149 (2%)
Query: 8 PGWVRLA---LCLTGLVLSLYALHVKAARARDRDYRALCDVGTAISCSRVFSSRWGRGFG 64
P W R+A +C G++LS+YA HV+ + RD ++RALCD+G + CS +SRWGRGFG
Sbjct: 12 PRWERVARYAVCAAGILLSIYAYHVEREKERDPEHRALCDLGPWVKCSAALASRWGRGFG 71
Query: 65 LVEHVLGQDSILNQSNSIFGCIFYTLQLLLGCLRTRWASVLMLLSSLVSLAGSVYLAWIL 124
L+ + G+D +LNQ NS+FG IFY LQLLLG + A+++++ SS++S+ GS+YLA+IL
Sbjct: 72 LLGSIFGKDGVLNQPNSVFGLIFYILQLLLGMTASAVAALILMTSSIMSVVGSLYLAYIL 131
Query: 125 FFVLYDFCIVCITTYAINVSLMWLSFRKV 153
+FVL +FCI+CI TY +N L+ ++++++
Sbjct: 132 YFVLKEFCIICIVTYVLNFLLLIINYKRL 160
>gi|45827739 vitamin K epoxide reductase complex, subunit 1
isoform 2 [Homo sapiens]
Length = 92
Score = 121 bits (304), Expect = 2e-28
Identities = 58/58 (100%), Positives = 58/58 (100%)
Query: 1 MGSTWGSPGWVRLALCLTGLVLSLYALHVKAARARDRDYRALCDVGTAISCSRVFSSR 58
MGSTWGSPGWVRLALCLTGLVLSLYALHVKAARARDRDYRALCDVGTAISCSRVFSSR
Sbjct: 1 MGSTWGSPGWVRLALCLTGLVLSLYALHVKAARARDRDYRALCDVGTAISCSRVFSSR 58
>gi|239752990 PREDICTED: hypothetical protein [Homo sapiens]
Length = 360
Score = 29.3 bits (64), Expect = 1.6
Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 30/148 (20%)
Query: 12 RLALCLTGLVLSLYALHVKAARARDRDYRALCDVGTAISCSRVFSSRWGRGFGLVEHVLG 71
RL L + L LS+ A+ A+A R L A S + V +SR + V+
Sbjct: 54 RLRLVMVLLALSMMAM----AKATWSSARVLAK---ANSLTTVLNSRASVNRTKISFVM- 105
Query: 72 QDSILNQSNSIFGCIFYTLQL--------------------LLGCLRTRWASVLMLLSSL 111
Q +L ++ I G +F+TL L+G L ++ VL+LLSSL
Sbjct: 106 QSELLTFTSVISGSLFFTLSRGSSNMLGAASSSTLAGPSEGLVGPLGVCFSGVLVLLSSL 165
Query: 112 VSLA--GSVYLAWILFFVLYDFCIVCIT 137
S + GS +L + F++ F + T
Sbjct: 166 ASFSCKGSFFLTFSSSFLVSVFPVPLFT 193
>gi|239741428 PREDICTED: hypothetical protein [Homo sapiens]
Length = 360
Score = 29.3 bits (64), Expect = 1.6
Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 30/148 (20%)
Query: 12 RLALCLTGLVLSLYALHVKAARARDRDYRALCDVGTAISCSRVFSSRWGRGFGLVEHVLG 71
RL L + L LS+ A+ A+A R L A S + V +SR + V+
Sbjct: 54 RLRLVMVLLALSMMAM----AKATWSSARVLAK---ANSLTTVLNSRASVNRTKISFVM- 105
Query: 72 QDSILNQSNSIFGCIFYTLQL--------------------LLGCLRTRWASVLMLLSSL 111
Q +L ++ I G +F+TL L+G L ++ VL+LLSSL
Sbjct: 106 QSELLTFTSVISGSLFFTLSRGSSNMLGAASSSTLAGPSEGLVGPLGVCFSGVLVLLSSL 165
Query: 112 VSLA--GSVYLAWILFFVLYDFCIVCIT 137
S + GS +L + F++ F + T
Sbjct: 166 ASFSCKGSFFLTFSSSFLVSVFPVPLFT 193
>gi|239747554 PREDICTED: hypothetical protein [Homo sapiens]
Length = 360
Score = 28.9 bits (63), Expect = 2.1
Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 30/148 (20%)
Query: 12 RLALCLTGLVLSLYALHVKAARARDRDYRALCDVGTAISCSRVFSSRWGRGFGLVEHVLG 71
RL L + L LS+ A+ A+A R L A S + V +SR + V+
Sbjct: 54 RLRLVMVLLALSMMAM----AKATWSSARVLAK---ANSLTTVLNSRASVNRTKISFVM- 105
Query: 72 QDSILNQSNSIFGCIFYTLQL--------------------LLGCLRTRWASVLMLLSSL 111
Q +L ++ I G +F+TL L+G L ++ VL+LLSSL
Sbjct: 106 QSELLTFTSVISGSLFFTLSRGSSNMLGAASSSTLAGPSEGLVGPLGICFSGVLVLLSSL 165
Query: 112 VSLA--GSVYLAWILFFVLYDFCIVCIT 137
S + GS +L + F++ F + T
Sbjct: 166 ASFSCKGSFFLTFSSSFLVSVFPVPLFT 193
>gi|13540547 solute carrier family 2 member 10 [Homo sapiens]
Length = 541
Score = 28.5 bits (62), Expect = 2.7
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 19/92 (20%)
Query: 47 TAISCSRVFSSRWGRGFGLVEHVLGQDSILNQSNSIFGCIFYTLQL----LLGCLRTRWA 102
TA+ C VF S + GFG V ++ + Y +++ C WA
Sbjct: 411 TALLCLMVFVSAFSFGFGPVTWLVLSE-------------IYPVEIRGRAFAFCNSFNWA 457
Query: 103 SVLMLLSSLVSLAGSVYLAWILFFVLYDFCIV 134
+ L + S + L G++ L+W F+LY V
Sbjct: 458 ANLFISLSFLDLIGTIGLSWT--FLLYGLTAV 487
>gi|239582720 ATG9 autophagy related 9 homolog B [Homo sapiens]
Length = 924
Score = 27.7 bits (60), Expect = 4.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 95 GCLRTRWASVLMLLSSLVSLAGSVYLAWILFFVLY 129
G L RW ++LL++L + LAW + V Y
Sbjct: 429 GALAARWGRTVLLLAALNLALSPLVLAWQVLHVFY 463
>gi|239753196 PREDICTED: hypothetical protein [Homo sapiens]
Length = 406
Score = 26.9 bits (58), Expect = 7.8
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 65 LVEHVLGQDSILNQSNSIFGCI---FYTLQLLLGCLRTRWASVL 105
L H+L Q LN +SI + F LQ LLG LR +W L
Sbjct: 147 LFSHLLVQSGHLNGISSISHLLHIAFLCLQRLLGFLRKKWRPYL 190
>gi|239747770 PREDICTED: hypothetical protein XP_002348262 [Homo
sapiens]
Length = 406
Score = 26.9 bits (58), Expect = 7.8
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 65 LVEHVLGQDSILNQSNSIFGCI---FYTLQLLLGCLRTRWASVL 105
L H+L Q LN +SI + F LQ LLG LR +W L
Sbjct: 147 LFSHLLVQSGHLNGISSISHLLHIAFLCLQRLLGFLRKKWRPYL 190
>gi|239741636 PREDICTED: hypothetical protein XP_002342253 [Homo
sapiens]
Length = 406
Score = 26.9 bits (58), Expect = 7.8
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 65 LVEHVLGQDSILNQSNSIFGCI---FYTLQLLLGCLRTRWASVL 105
L H+L Q LN +SI + F LQ LLG LR +W L
Sbjct: 147 LFSHLLVQSGHLNGISSISHLLHIAFLCLQRLLGFLRKKWRPYL 190
>gi|91206396 taste receptor, type 1, member 3 [Homo sapiens]
Length = 852
Score = 26.9 bits (58), Expect = 7.8
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 93 LLGCLRTRWASVLMLLSSLVSLA 115
L GCLR WA +++LL+ LV +A
Sbjct: 672 LSGCLRGPWAWLVVLLAMLVEVA 694
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.330 0.140 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,880,388
Number of Sequences: 37866
Number of extensions: 206533
Number of successful extensions: 587
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 581
Number of HSP's gapped (non-prelim): 12
length of query: 163
length of database: 18,247,518
effective HSP length: 94
effective length of query: 69
effective length of database: 14,688,114
effective search space: 1013479866
effective search space used: 1013479866
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.