Search of human proteins with 12962939

Search of human proteins with 12962939

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|12962939 OTU domain, ubiquitin aldehyde binding 2 [Homo
sapiens]
         (234 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|12962939 OTU domain, ubiquitin aldehyde binding 2 [Homo sapiens]   469   e-133
gi|109148508 otubain 1 [Homo sapiens]                                 222   2e-58
gi|115334675 hypothetical protein LOC90268 [Homo sapiens]              32   0.36 
gi|149192871 OTU domain containing 3 [Homo sapiens]                    32   0.61 
gi|55769520 inositol hexaphosphate kinase 2 isoform a [Homo sapi...    30   2.3  
gi|56237025 inositol hexaphosphate kinase 2 isoform a [Homo sapi...    30   2.3  
gi|11225266 transient receptor potential cation channel, subfami...    29   4.0  
gi|76150625 nucleolar protein 1, 120kDa [Homo sapiens]                 28   5.2  
gi|76150623 nucleolar protein 1, 120kDa [Homo sapiens]                 28   5.2  
gi|4557403 carnitine/acylcarnitine translocase [Homo sapiens]          28   8.9  

>gi|12962939 OTU domain, ubiquitin aldehyde binding 2 [Homo sapiens]
          Length = 234

 Score =  469 bits (1208), Expect = e-133
 Identities = 234/234 (100%), Positives = 234/234 (100%)

Query: 1   MSETSFNLISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDGNCFYRALGYSY 60
           MSETSFNLISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDGNCFYRALGYSY
Sbjct: 1   MSETSFNLISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDGNCFYRALGYSY 60

Query: 61  LESLLGKSREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLK 120
           LESLLGKSREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLK
Sbjct: 61  LESLLGKSREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLK 120

Query: 121 VFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQI 180
           VFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQI
Sbjct: 121 VFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQI 180

Query: 181 TALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTSHYNILYAADKH 234
           TALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTSHYNILYAADKH
Sbjct: 181 TALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTSHYNILYAADKH 234


>gi|109148508 otubain 1 [Homo sapiens]
          Length = 271

 Score =  222 bits (565), Expect = 2e-58
 Identities = 107/224 (47%), Positives = 158/224 (70%), Gaps = 2/224 (0%)

Query: 8   LISEKCDILSILRDHPEN-RIYRRKIEELSKRFTAIRKTKGDGNCFYRALGYSYLESLLG 66
           L+SE+ ++  + +++ E+  IY++KI++L K+++ IRKT+ DGNCFYRA G+S+LE+LL 
Sbjct: 47  LVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLD 106

Query: 67  KSREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQS 126
            S+E+ +FK    ++  DL++ GF E    +F N F  ++E VEK  SV+ LL  FNDQS
Sbjct: 107 DSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQS 166

Query: 127 ASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQA 186
            SD++V +LRLLTS +++  + FF HFI+    +K+FC  EVEPM  E DHI I AL+QA
Sbjct: 167 TSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQA 226

Query: 187 LSIALQVEYVDEMD-TALNHHVFPEAATPSVYLLYKTSHYNILY 229
           LS+++QVEY+D  +    N H+FPE + P VYLLY+  HY+ILY
Sbjct: 227 LSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILY 270


>gi|115334675 hypothetical protein LOC90268 [Homo sapiens]
          Length = 352

 Score = 32.3 bits (72), Expect = 0.36
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 33  EELSKRFTAIRKTKGDGNCFYRALGYSYLESLLG 66
           EE+S++FT+IR+ +GD  C  RA  +  +   +G
Sbjct: 111 EEVSQKFTSIRRVRGDNYCALRATLFQAMSQAVG 144


>gi|149192871 OTU domain containing 3 [Homo sapiens]
          Length = 398

 Score = 31.6 bits (70), Expect = 0.61
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)

Query: 42  IRKTKGDGNCFYRALGYSYLESLLGKSREIFKFKERVL 79
           +R+  GDGNC +RALG    + L G SR   K ++  +
Sbjct: 67  LREVPGDGNCLFRALG----DQLEGHSRNHLKHRQETV 100


>gi|55769520 inositol hexaphosphate kinase 2 isoform a [Homo
           sapiens]
          Length = 426

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 17/41 (41%), Positives = 23/41 (56%)

Query: 109 VEKDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADF 149
           VEK G++SS LK +N  S   H  Q  R+  +A  RN+  F
Sbjct: 163 VEKKGNISSQLKHYNPWSMKCHQQQLQRMKENAKHRNQYKF 203


>gi|56237025 inositol hexaphosphate kinase 2 isoform a [Homo
           sapiens]
          Length = 426

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 17/41 (41%), Positives = 23/41 (56%)

Query: 109 VEKDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADF 149
           VEK G++SS LK +N  S   H  Q  R+  +A  RN+  F
Sbjct: 163 VEKKGNISSQLKHYNPWSMKCHQQQLQRMKENAKHRNQYKF 203


>gi|11225266 transient receptor potential cation channel, subfamily
           M, member 5 [Homo sapiens]
          Length = 1165

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 137 LLTSAFIRNRADFFRHFIDEEMDIKDFCTH 166
           ++  A + N+ +F R F+D   D+ DF T+
Sbjct: 383 VMVDALVSNKPEFVRLFVDNGADVADFLTY 412


>gi|76150625 nucleolar protein 1, 120kDa [Homo sapiens]
          Length = 808

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 11/65 (16%)

Query: 14  DILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDGNCFYRALGYSYLESLLGKSREIFK 73
           DI+ ILRD    R      EE   R   + + K D      A+ YSY + LLGK  ++F 
Sbjct: 241 DIVGILRDFGAQR------EEGRSRSEYLNRLKKD-----LAIYYSYGDFLLGKLMDLFP 289

Query: 74  FKERV 78
             E V
Sbjct: 290 LSELV 294


>gi|76150623 nucleolar protein 1, 120kDa [Homo sapiens]
          Length = 808

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 11/65 (16%)

Query: 14  DILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDGNCFYRALGYSYLESLLGKSREIFK 73
           DI+ ILRD    R      EE   R   + + K D      A+ YSY + LLGK  ++F 
Sbjct: 241 DIVGILRDFGAQR------EEGRSRSEYLNRLKKD-----LAIYYSYGDFLLGKLMDLFP 289

Query: 74  FKERV 78
             E V
Sbjct: 290 LSELV 294


>gi|4557403 carnitine/acylcarnitine translocase [Homo sapiens]
          Length = 301

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 11/112 (9%)

Query: 12  KCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDGNCFYRALGYSYLESLLGKSREI 71
           K  +L+++RD P + +Y    E L   FT   K   + +   R L       + G    I
Sbjct: 170 KGTVLTLMRDVPASGMYFMTYEWLKNIFTPEGKRVSELSA-PRIL-------VAGGIAGI 221

Query: 72  FKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFN 123
           F +   +   P D+L + F+      + N F  V+  + +D  V+SL K FN
Sbjct: 222 FNWAVAI---PPDVLKSRFQTAPPGKYPNGFRDVLRELIRDEGVTSLYKGFN 270


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,558,273
Number of Sequences: 37866
Number of extensions: 278215
Number of successful extensions: 686
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 678
Number of HSP's gapped (non-prelim): 10
length of query: 234
length of database: 18,247,518
effective HSP length: 99
effective length of query: 135
effective length of database: 14,498,784
effective search space: 1957335840
effective search space used: 1957335840
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.