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Search of human proteins with 4504477
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4504477 4-hydroxyphenylpyruvate dioxygenase [Homo sapiens]
(393 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4504477 4-hydroxyphenylpyruvate dioxygenase [Homo sapiens] 802 0.0
gi|14249394 glyoxalase domain containing 1 [Homo sapiens] 98 1e-20
gi|110349719 titin isoform N2-A [Homo sapiens] 36 0.053
gi|110349717 titin isoform novex-2 [Homo sapiens] 36 0.053
gi|110349713 titin isoform novex-1 [Homo sapiens] 36 0.053
gi|110349715 titin isoform N2-B [Homo sapiens] 36 0.053
gi|33188443 microfilament and actin filament cross-linker protei... 32 0.99
gi|33188445 microfilament and actin filament cross-linker protei... 32 0.99
gi|47458820 signal transducer and activator of transcription 3 i... 31 2.2
gi|21618338 signal transducer and activator of transcription 3 i... 31 2.2
gi|21618340 signal transducer and activator of transcription 3 i... 31 2.2
gi|149999378 inverted formin 2 isoform 2 [Homo sapiens] 30 2.9
gi|149999380 inverted formin 2 isoform 1 [Homo sapiens] 30 2.9
gi|14249316 hypothetical protein LOC84800 [Homo sapiens] 30 2.9
gi|148539554 indoleamine-pyrrole 2,3 dioxygenase-like 1 [Homo sa... 30 4.9
gi|142356950 potassium channel tetramerisation domain containing... 29 6.4
gi|28372531 protein phosphatase 4, regulatory subunit 2 [Homo sa... 29 8.4
gi|150456432 unc-51-like kinase 3 [Homo sapiens] 29 8.4
gi|134133248 FYVE, RhoGEF and PH domain containing 3 [Homo sapiens] 29 8.4
gi|134133265 FYVE, RhoGEF and PH domain containing 3 [Homo sapiens] 29 8.4
>gi|4504477 4-hydroxyphenylpyruvate dioxygenase [Homo sapiens]
Length = 393
Score = 802 bits (2071), Expect = 0.0
Identities = 393/393 (100%), Positives = 393/393 (100%)
Query: 1 MTTYSDKGAKPERGRFLHFHSVTFWVGNAKQAASFYCSKMGFEPLAYRGLETGSREVVSH 60
MTTYSDKGAKPERGRFLHFHSVTFWVGNAKQAASFYCSKMGFEPLAYRGLETGSREVVSH
Sbjct: 1 MTTYSDKGAKPERGRFLHFHSVTFWVGNAKQAASFYCSKMGFEPLAYRGLETGSREVVSH 60
Query: 61 VIKQGKIVFVLSSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCDYIVQKARERGAKIMRE 120
VIKQGKIVFVLSSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCDYIVQKARERGAKIMRE
Sbjct: 61 VIKQGKIVFVLSSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCDYIVQKARERGAKIMRE 120
Query: 121 PWVEQDKFGKVKFAVLQTYGDTTHTLVEKMNYIGQFLPGYEAPAFMDPLLPKLPKCSLEM 180
PWVEQDKFGKVKFAVLQTYGDTTHTLVEKMNYIGQFLPGYEAPAFMDPLLPKLPKCSLEM
Sbjct: 121 PWVEQDKFGKVKFAVLQTYGDTTHTLVEKMNYIGQFLPGYEAPAFMDPLLPKLPKCSLEM 180
Query: 181 IDHIVGNQPDQEMVSASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSIVVANYEESIKMPI 240
IDHIVGNQPDQEMVSASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSIVVANYEESIKMPI
Sbjct: 181 IDHIVGNQPDQEMVSASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSIVVANYEESIKMPI 240
Query: 241 NEPAPGKKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRERGLEFLSVPSTYYKQLR 300
NEPAPGKKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRERGLEFLSVPSTYYKQLR
Sbjct: 241 NEPAPGKKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRERGLEFLSVPSTYYKQLR 300
Query: 301 EKLKTAKIKVKENIDALEELKILVDYDEKGYLLQIFTKPVQDRPTLFLEVIQRHNHQGFG 360
EKLKTAKIKVKENIDALEELKILVDYDEKGYLLQIFTKPVQDRPTLFLEVIQRHNHQGFG
Sbjct: 301 EKLKTAKIKVKENIDALEELKILVDYDEKGYLLQIFTKPVQDRPTLFLEVIQRHNHQGFG 360
Query: 361 AGNFNSLFKAFEEEQNLRGNLTNMETNGVVPGM 393
AGNFNSLFKAFEEEQNLRGNLTNMETNGVVPGM
Sbjct: 361 AGNFNSLFKAFEEEQNLRGNLTNMETNGVVPGM 393
>gi|14249394 glyoxalase domain containing 1 [Homo sapiens]
Length = 371
Score = 97.8 bits (242), Expect = 1e-20
Identities = 89/347 (25%), Positives = 161/347 (46%), Gaps = 25/347 (7%)
Query: 41 GFEPLAYRGLETGSREVVSHVIKQGKIVFVLSSALNPWNKEMGDHLVKHGDGVKDIAFEV 100
GF+PLA R ++ G R++ ++ G VF+++ G ++ F+V
Sbjct: 30 GFQPLASREVD-GWRQLA---LRSGDAVFLVNEGAGSGEPLYGLDPRHAVPSATNLCFDV 85
Query: 101 EDCDYIVQKARERGAKIMREPWVEQDKFGKVKFAVLQT-YGDTTHTLVEKMNYIGQFLPG 159
D ++ G + P +D G +AV+ + G + TL+E+ Y G FLPG
Sbjct: 86 ADAGAATRELAALGCSVPVPPVRVRDAQGAATYAVVSSPAGILSLTLLERAGYRGPFLPG 145
Query: 160 YEAPAFMDPLLPKLPKCSLEMIDHIVGNQPDQEMVSASEWYLKNLQF-HRFWSV-DDTQV 217
+ P+ + +DH+ + W+ L F H S +D ++
Sbjct: 146 FR------PVSSAPGPGWVSRVDHLTLACTPGSSPTLLRWFHDCLGFCHLPLSPGEDPEL 199
Query: 218 HTEYSS------LRSIVVANYEESI--KMPINEPAPGK--KKSQIQEYVDYNGGAGVQHI 267
E ++ LR + SI + + E PG ++ Q+++++ + G G+QH+
Sbjct: 200 GLEMTAGFGLGGLRLTALQAQPGSIVPTLVLAESLPGATTRQDQVEQFLARHKGPGLQHV 259
Query: 268 ALKTEDIITAIRHLRERGLEFLSVPSTYYKQLREKLKTAKIKVKENIDALEELKILVDYD 327
L T +I+ A + G +FL+ P YY+Q ++ + + ++ L IL+D D
Sbjct: 260 GLYTPNIVEATEGVATAGGQFLAPPGAYYQQPGKERQIRAAGHEPHL--LARQGILLDGD 317
Query: 328 EKGYLLQIFTKPVQDRPTLFLEVIQRHNHQGFGAGNFNSLFKAFEEE 374
+ +LLQ+FTK + T FLE+IQR GFG GN +L+++ +E+
Sbjct: 318 KGKFLLQVFTKSLFTEDTFFLELIQRQGATGFGQGNIRALWQSVQEQ 364
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 36.2 bits (82), Expect = 0.053
Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 19/141 (13%)
Query: 27 GNAKQAASFYCSKMGFEPLAYRGLETGSREVVSHVIKQ---GKIVFVLSSALNPWNKEMG 83
G A+Q ++ F Y E +VVS G +V+VL S +NP+ E
Sbjct: 31393 GQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN 31452
Query: 84 DHLVKH---------GDGVKDIAFEVED-CDYIV---QKARERGAKIMREPWVEQDKFGK 130
++++ + K+I+ E D D ++ +K+R ++ ++ PW++Q K +
Sbjct: 31453 QQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQHPWLKQ-KIER 31511
Query: 131 VKFAVLQT--YGDTTHTLVEK 149
V V++T + HTL++K
Sbjct: 31512 VSTKVIRTLKHRRYYHTLIKK 31532
>gi|110349717 titin isoform novex-2 [Homo sapiens]
Length = 27118
Score = 36.2 bits (82), Expect = 0.053
Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 19/141 (13%)
Query: 27 GNAKQAASFYCSKMGFEPLAYRGLETGSREVVSHVIKQ---GKIVFVLSSALNPWNKEMG 83
G A+Q ++ F Y E +VVS G +V+VL S +NP+ E
Sbjct: 25088 GQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN 25147
Query: 84 DHLVKH---------GDGVKDIAFEVED-CDYIV---QKARERGAKIMREPWVEQDKFGK 130
++++ + K+I+ E D D ++ +K+R ++ ++ PW++Q K +
Sbjct: 25148 QQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQHPWLKQ-KIER 25206
Query: 131 VKFAVLQT--YGDTTHTLVEK 149
V V++T + HTL++K
Sbjct: 25207 VSTKVIRTLKHRRYYHTLIKK 25227
>gi|110349713 titin isoform novex-1 [Homo sapiens]
Length = 27051
Score = 36.2 bits (82), Expect = 0.053
Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 19/141 (13%)
Query: 27 GNAKQAASFYCSKMGFEPLAYRGLETGSREVVSHVIKQ---GKIVFVLSSALNPWNKEMG 83
G A+Q ++ F Y E +VVS G +V+VL S +NP+ E
Sbjct: 25021 GQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN 25080
Query: 84 DHLVKH---------GDGVKDIAFEVED-CDYIV---QKARERGAKIMREPWVEQDKFGK 130
++++ + K+I+ E D D ++ +K+R ++ ++ PW++Q K +
Sbjct: 25081 QQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQHPWLKQ-KIER 25139
Query: 131 VKFAVLQT--YGDTTHTLVEK 149
V V++T + HTL++K
Sbjct: 25140 VSTKVIRTLKHRRYYHTLIKK 25160
>gi|110349715 titin isoform N2-B [Homo sapiens]
Length = 26926
Score = 36.2 bits (82), Expect = 0.053
Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 19/141 (13%)
Query: 27 GNAKQAASFYCSKMGFEPLAYRGLETGSREVVSHVIKQ---GKIVFVLSSALNPWNKEMG 83
G A+Q ++ F Y E +VVS G +V+VL S +NP+ E
Sbjct: 24896 GQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN 24955
Query: 84 DHLVKH---------GDGVKDIAFEVED-CDYIV---QKARERGAKIMREPWVEQDKFGK 130
++++ + K+I+ E D D ++ +K+R ++ ++ PW++Q K +
Sbjct: 24956 QQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQHPWLKQ-KIER 25014
Query: 131 VKFAVLQT--YGDTTHTLVEK 149
V V++T + HTL++K
Sbjct: 25015 VSTKVIRTLKHRRYYHTLIKK 25035
>gi|33188443 microfilament and actin filament cross-linker protein
isoform b [Homo sapiens]
Length = 5938
Score = 32.0 bits (71), Expect = 0.99
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 253 QEYVDYNGGAGVQHIALKT--EDIITAIRH----LRERGLEFLSVPSTYYKQLREKLKTA 306
++ VD N + + L D IT I+H +R R E L T+ KQ +++L+TA
Sbjct: 5365 EKRVDVNSAVAMGEVILAVCHPDCITTIKHWITIIRARFEEVL----TWAKQHQQRLETA 5420
Query: 307 KIKVKENIDALEELKILVDYDEKGYLLQIFTKPVQDRPTLFLEVIQRH 354
++ N + LEEL + + E L+Q +P+ +I H
Sbjct: 5421 LSELVANAELLEELLAWIQWAET-TLIQRDQEPIPQNIDRVKALIAEH 5467
>gi|33188445 microfilament and actin filament cross-linker protein
isoform a [Homo sapiens]
Length = 5430
Score = 32.0 bits (71), Expect = 0.99
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 253 QEYVDYNGGAGVQHIALKT--EDIITAIRH----LRERGLEFLSVPSTYYKQLREKLKTA 306
++ VD N + + L D IT I+H +R R E L T+ KQ +++L+TA
Sbjct: 4863 EKRVDVNSAVAMGEVILAVCHPDCITTIKHWITIIRARFEEVL----TWAKQHQQRLETA 4918
Query: 307 KIKVKENIDALEELKILVDYDEKGYLLQIFTKPVQDRPTLFLEVIQRH 354
++ N + LEEL + + E L+Q +P+ +I H
Sbjct: 4919 LSELVANAELLEELLAWIQWAET-TLIQRDQEPIPQNIDRVKALIAEH 4965
>gi|47458820 signal transducer and activator of transcription 3
isoform 3 [Homo sapiens]
Length = 722
Score = 30.8 bits (68), Expect = 2.2
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 247 KKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRERGLEFLSVPSTYYKQLREKLKTA 306
KK ++Q+ V Y G VQH + E I+ R+L + P R
Sbjct: 282 KKLEELQQKVSYKGDPIVQHRPMLEERIVELFRNLMKSAFVVERQPCMPMHPDR------ 335
Query: 307 KIKVKENIDALEELKILVDYDEKGYLLQI 335
+ +K + ++++LV + E Y L+I
Sbjct: 336 PLVIKTGVQFTTKVRLLVKFPELNYQLKI 364
>gi|21618338 signal transducer and activator of transcription 3
isoform 2 [Homo sapiens]
Length = 769
Score = 30.8 bits (68), Expect = 2.2
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 247 KKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRERGLEFLSVPSTYYKQLREKLKTA 306
KK ++Q+ V Y G VQH + E I+ R+L + P R
Sbjct: 282 KKLEELQQKVSYKGDPIVQHRPMLEERIVELFRNLMKSAFVVERQPCMPMHPDR------ 335
Query: 307 KIKVKENIDALEELKILVDYDEKGYLLQI 335
+ +K + ++++LV + E Y L+I
Sbjct: 336 PLVIKTGVQFTTKVRLLVKFPELNYQLKI 364
>gi|21618340 signal transducer and activator of transcription 3
isoform 1 [Homo sapiens]
Length = 770
Score = 30.8 bits (68), Expect = 2.2
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 247 KKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRERGLEFLSVPSTYYKQLREKLKTA 306
KK ++Q+ V Y G VQH + E I+ R+L + P R
Sbjct: 282 KKLEELQQKVSYKGDPIVQHRPMLEERIVELFRNLMKSAFVVERQPCMPMHPDR------ 335
Query: 307 KIKVKENIDALEELKILVDYDEKGYLLQI 335
+ +K + ++++LV + E Y L+I
Sbjct: 336 PLVIKTGVQFTTKVRLLVKFPELNYQLKI 364
>gi|149999378 inverted formin 2 isoform 2 [Homo sapiens]
Length = 1240
Score = 30.4 bits (67), Expect = 2.9
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 261 GAGVQHIA-----LKTEDIITAIRHLRERGLEFLSVPSTYYKQLREKLKTAKIKVKENID 315
G GV I+ L + A+ + R+ G+E++ Y +QL + L T+ + VK+ +
Sbjct: 86 GRGVARISDALLQLTCVSCVRAVMNSRQ-GIEYILSNQGYVRQLSQALDTSNVMVKKQV- 143
Query: 316 ALEELKILVDYDEKGYLLQI 335
E L L Y +G++L +
Sbjct: 144 -FELLAALCIYSPEGHVLTL 162
>gi|149999380 inverted formin 2 isoform 1 [Homo sapiens]
Length = 1249
Score = 30.4 bits (67), Expect = 2.9
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 261 GAGVQHIA-----LKTEDIITAIRHLRERGLEFLSVPSTYYKQLREKLKTAKIKVKENID 315
G GV I+ L + A+ + R+ G+E++ Y +QL + L T+ + VK+ +
Sbjct: 86 GRGVARISDALLQLTCVSCVRAVMNSRQ-GIEYILSNQGYVRQLSQALDTSNVMVKKQV- 143
Query: 316 ALEELKILVDYDEKGYLLQI 335
E L L Y +G++L +
Sbjct: 144 -FELLAALCIYSPEGHVLTL 162
>gi|14249316 hypothetical protein LOC84800 [Homo sapiens]
Length = 234
Score = 30.4 bits (67), Expect = 2.9
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 261 GAGVQHIA-----LKTEDIITAIRHLRERGLEFLSVPSTYYKQLREKLKTAKIKVKENID 315
G GV I+ L + A+ + R+ G+E++ Y +QL + L T+ + VK+ +
Sbjct: 86 GRGVARISDALLQLTCVSCVRAVMNSRQ-GIEYILSNQGYVRQLSQALDTSNVMVKKQV- 143
Query: 316 ALEELKILVDYDEKGYLLQI 335
E L L Y +G++L +
Sbjct: 144 -FELLAALCIYSPEGHVLTL 162
>gi|148539554 indoleamine-pyrrole 2,3 dioxygenase-like 1 [Homo
sapiens]
Length = 420
Score = 29.6 bits (65), Expect = 4.9
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 13/121 (10%)
Query: 221 YSSLRSIVVANYEESIKMPINEPAPGKKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRH 280
Y+ +R I ++ ++++ MP G QE + Y+GG+ Q L D IRH
Sbjct: 244 YAGIR-IFLSGWKDNPAMPAGLMYEGVS----QEPLKYSGGSAAQSTVLHAFDEFLGIRH 298
Query: 281 LRERGLEFLSVPSTYYKQLREKLKTAKIKVKENIDALEELKILVDYDEKGYLLQIFTKPV 340
+E G + ++R+ + + E+I + L+ + + +LL + + V
Sbjct: 299 SKESG--------DFLYRMRDYMPPSHKAFIEDIHSAPSLRDYILSSGQDHLLTAYNQCV 350
Query: 341 Q 341
Q
Sbjct: 351 Q 351
>gi|142356950 potassium channel tetramerisation domain containing 14
[Homo sapiens]
Length = 255
Score = 29.3 bits (64), Expect = 6.4
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 285 GLEFLSVPSTYYKQLREKLKTAKIKVKENIDALEELKILVDYDEKGYLLQIFTKPVQDRP 344
G F+ PSTY++ + + L+T ++ + + E + Y ++ K ++D P
Sbjct: 75 GRFFIDRPSTYFRPILDYLRTGQVPTQHIPEVYREAQF--------YEIKPLVKLLEDMP 126
Query: 345 TLFLEVIQR 353
+F E + R
Sbjct: 127 QIFGEQVSR 135
>gi|28372531 protein phosphatase 4, regulatory subunit 2 [Homo
sapiens]
Length = 417
Score = 28.9 bits (63), Expect = 8.4
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 181 IDHIVGNQPDQEMVSASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSIVVANYEES 235
+ + PD++ V A +K L+F + V +T T S + S++V E S
Sbjct: 225 VSPLKNKHPDEDAVEAEGHEVKRLRFDKEGEVRETASQTTSSEISSVMVGETEAS 279
>gi|150456432 unc-51-like kinase 3 [Homo sapiens]
Length = 472
Score = 28.9 bits (63), Expect = 8.4
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 264 VQHIALKTEDIITAIRHLRERGLEFLSVPSTYYKQLREKLKTAKIKVKENIDALEELKIL 323
VQ + E A L + L+F VP+ +Y+ ++ + K KV + + EELK +
Sbjct: 289 VQAVKKDQEGDSAAALSLYCKALDFF-VPALHYEVDAQRKEAIKAKVGQYVSRAEELKAI 347
Query: 324 VDYDEKGYLLQ------IFTKPVQDRPTL 346
V + L Q + + +D+P L
Sbjct: 348 VSSSNQALLRQGTSARDLLREMARDKPRL 376
>gi|134133248 FYVE, RhoGEF and PH domain containing 3 [Homo sapiens]
Length = 725
Score = 28.9 bits (63), Expect = 8.4
Identities = 35/160 (21%), Positives = 66/160 (41%), Gaps = 14/160 (8%)
Query: 233 EESIKMPINEPAPGKKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRERGLEFLSVP 292
EE I P NE K+ QIQ+ NG +H+ L I+ + LR G +F
Sbjct: 361 EEDIVNPANELI---KEGQIQKLSAKNGTPQDRHLFLFNSMILYCVPKLRLMGQKF---- 413
Query: 293 STYYKQLREKLKTAKIKVKENIDALEELKILVDYDEKGYLLQIFTKPVQDRPTLFLE-VI 351
+REK+ + ++V++ + ++ ++ LQ T+ + ++ I
Sbjct: 414 -----SVREKMDISGLQVQDIVKPNTAHTFIITGRKRSLELQTRTEEEKKEWIQIIQATI 468
Query: 352 QRHNHQGFGAGNFNSLFKAFEEEQNLRGNLTNMETNGVVP 391
++H F F +E+ +L ++ T+ V P
Sbjct: 469 EKHKQNSETFKAFGGAFSQ-DEDPSLSPDMPITSTSPVEP 507
>gi|134133265 FYVE, RhoGEF and PH domain containing 3 [Homo sapiens]
Length = 725
Score = 28.9 bits (63), Expect = 8.4
Identities = 35/160 (21%), Positives = 66/160 (41%), Gaps = 14/160 (8%)
Query: 233 EESIKMPINEPAPGKKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRERGLEFLSVP 292
EE I P NE K+ QIQ+ NG +H+ L I+ + LR G +F
Sbjct: 361 EEDIVNPANELI---KEGQIQKLSAKNGTPQDRHLFLFNSMILYCVPKLRLMGQKF---- 413
Query: 293 STYYKQLREKLKTAKIKVKENIDALEELKILVDYDEKGYLLQIFTKPVQDRPTLFLE-VI 351
+REK+ + ++V++ + ++ ++ LQ T+ + ++ I
Sbjct: 414 -----SVREKMDISGLQVQDIVKPNTAHTFIITGRKRSLELQTRTEEEKKEWIQIIQATI 468
Query: 352 QRHNHQGFGAGNFNSLFKAFEEEQNLRGNLTNMETNGVVP 391
++H F F +E+ +L ++ T+ V P
Sbjct: 469 EKHKQNSETFKAFGGAFSQ-DEDPSLSPDMPITSTSPVEP 507
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,056,488
Number of Sequences: 37866
Number of extensions: 659929
Number of successful extensions: 1539
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1531
Number of HSP's gapped (non-prelim): 22
length of query: 393
length of database: 18,247,518
effective HSP length: 104
effective length of query: 289
effective length of database: 14,309,454
effective search space: 4135432206
effective search space used: 4135432206
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.