Guide to the Human Genome
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Name: GPR39 Sequence: fasta or formatted (453aa) NCBI GI: 4504097
Description:

G protein-coupled receptor 39

Referenced in:

G-Protein-coupled Receptors
Peptide and Protein G-coupled Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         30           3
 C cysteine            2.6         12           2
 D aspartate           1.3          6           1
 E glutamate           4.9         22           2
 F phenylalanine       5.7         26           2
 G glycine             3.3         15           2
 H histidine           3.3         15           2
 I isoleucine          5.5         25           2
 K lysine              3.5         16           2
 L leucine            11.5         52           2
 M methionine          3.1         14           2
 N asparagine          2.9         13           1
 P proline             4.6         21           2
 Q glutamine           4.9         22           2
 R arginine            6.2         28           2
 S serine             11.5         52           2
 T threonine           6.4         29           2
 V valine              7.7         35           2
 W tryptophan          1.5          7           1
 Y tyrosine            2.9         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   G protein-coupled receptor 39 
NTSR1                 0.173   neurotensin receptor 1 
NTSR2                 0.139   neurotensin receptor 2 
NMUR2                 0.123   neuromedin U receptor 2 
MLNR                  0.117   motilin receptor 
NMUR1                 0.116   neuromedin U receptor 1 
GHSR                  0.091   growth hormone secretagogue receptor isoform 1a [Hom...
APLNR                 0.079   apelin receptor 
EDNRB                 0.068   endothelin receptor type B isoform 1 precursor [Hom...
EDNRB                 0.068   endothelin receptor type B isoform 1 precursor 
OPRM1                 0.068   opioid receptor, mu 1 isoform MOR-1B2 
GHSR                  0.067   growth hormone secretagogue receptor isoform 1b [Homo...
HTR4                  0.065   serotonin 5-HT4 receptor isoform hb 
OPRM1                 0.065   opioid receptor, mu 1 isoform MOR-1H 
OPRM1                 0.065   opioid receptor, mu 1 isoform MOR-1 
OPRM1                 0.065   opioid receptor, mu 1 isoform MOR-1B5 
OPRM1                 0.065   opioid receptor, mu 1 isoform MOR-1B3 
OPRM1                 0.065   opioid receptor, mu 1 isoform MOR-1B1 
OPRM1                 0.065   opioid receptor, mu 1 isoform MOR-1A 
OPRM1                 0.065   opioid receptor, mu 1 isoform MOR-1B4 
OPRM1                 0.065   opioid receptor, mu 1 isoform MOR-1O 
OPRM1                 0.065   opioid receptor, mu 1 isoform MOR-1X 
GALR1                 0.064   galanin receptor 1 
SSTR1                 0.063   somatostatin receptor 1 
SSTR3                 0.063   somatostatin receptor 3 
EDNRA                 0.063   endothelin receptor type A 
HTR4                  0.063   serotonin 5-HT4 receptor isoform n 
HTR4                  0.063   serotonin 5-HT4 receptor isoform i 
HTR4                  0.063   serotonin 5-HT4 receptor isoform d 
HTR4                  0.063   serotonin 5-HT4 receptor isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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