Search of human proteins with 4503365

Search of human proteins with 4503365

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4503365 dolichyl-phosphate mannosyltransferase 2 [Homo
sapiens]
         (84 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4503365 dolichyl-phosphate mannosyltransferase 2 [Homo sapiens]    165   8e-42
gi|85540447 solute carrier family 26, member 11 [Homo sapiens]         31   0.18 
gi|6912534 BMP and activin membrane-bound inhibitor precursor [H...    30   0.41 
gi|55770866 transmembrane protein 31 [Homo sapiens]                    28   1.6  
gi|67191027 integrin alpha 4 precursor [Homo sapiens]                  27   2.7  
gi|238624188 diffuse panbronchiolitis critical region 1 protein ...    27   4.5  
gi|45827704 melanocortin 2 receptor accessory protein isoform be...    27   4.5  
gi|30520312 melanocortin 2 receptor accessory protein isoform al...    27   4.5  
gi|58331222 ATPase, class VI, type 11C isoform b [Homo sapiens]        27   4.5  
gi|40316839 ATPase, class VI, type 11C isoform a [Homo sapiens]        27   4.5  
gi|53729332 membrane-associated ring finger (C3HC4) 2 isoform 1 ...    27   4.5  
gi|53729330 membrane-associated ring finger (C3HC4) 2 isoform 1 ...    27   4.5  

>gi|4503365 dolichyl-phosphate mannosyltransferase 2 [Homo
          sapiens]
          Length = 84

 Score =  165 bits (417), Expect = 8e-42
 Identities = 84/84 (100%), Positives = 84/84 (100%)

Query: 1  MATGTDQVVGLGLVAVSLIIFTYYTAWVILLPFIDSQHVIHKYFLPRAYAVAIPLAAGLL 60
          MATGTDQVVGLGLVAVSLIIFTYYTAWVILLPFIDSQHVIHKYFLPRAYAVAIPLAAGLL
Sbjct: 1  MATGTDQVVGLGLVAVSLIIFTYYTAWVILLPFIDSQHVIHKYFLPRAYAVAIPLAAGLL 60

Query: 61 LLLFVGLFISYVMLKTKRVTKKAQ 84
          LLLFVGLFISYVMLKTKRVTKKAQ
Sbjct: 61 LLLFVGLFISYVMLKTKRVTKKAQ 84


>gi|85540447 solute carrier family 26, member 11 [Homo sapiens]
          Length = 606

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 19/76 (25%)

Query: 4   GTDQVVGLGLVAVSLIIFTYYT----AWVILLPFIDSQHVIHKYFLPRAYAVAIPLAAGL 59
           GT + V LG  A+  ++ ++YT    A+ +LL F+                  I LA G+
Sbjct: 95  GTSRDVTLGPTAIMSLLVSFYTFHEPAYAVLLAFLSG---------------CIQLAMGV 139

Query: 60  LLLLFVGLFISYVMLK 75
           L L F+  FISY ++K
Sbjct: 140 LRLGFLLDFISYPVIK 155


>gi|6912534 BMP and activin membrane-bound inhibitor precursor [Homo
           sapiens]
          Length = 260

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 13/38 (34%), Positives = 24/38 (63%)

Query: 47  RAYAVAIPLAAGLLLLLFVGLFISYVMLKTKRVTKKAQ 84
           RA  +A+P+A GL+L+L + L +  +  + KR+  + Q
Sbjct: 151 RAAVIAVPIAGGLILVLLIMLALRMLRSENKRLQDQRQ 188


>gi|55770866 transmembrane protein 31 [Homo sapiens]
          Length = 168

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 16/42 (38%), Positives = 25/42 (59%)

Query: 28  VILLPFIDSQHVIHKYFLPRAYAVAIPLAAGLLLLLFVGLFI 69
           +IL  F  S    +K+FLP   +++  +   LLLLLF+ +FI
Sbjct: 123 IILHLFALSTLYFYKFFLPTILSLSFFILLVLLLLLFIIVFI 164


>gi|67191027 integrin alpha 4 precursor [Homo sapiens]
          Length = 1032

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 46   PRAYAVAIPLAAGLLLLLFVGLFISYVMLK 75
            P+ Y   + +++ LLL L V L ISYVM K
Sbjct: 972  PKRYFTIVIISSSLLLGLIVLLLISYVMWK 1001


>gi|238624188 diffuse panbronchiolitis critical region 1 protein [Homo
            sapiens]
          Length = 1393

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 51   VAIPLAAGLLLLLFVGL--FISYVMLKTKRVTKKAQ 84
            V + L A +LLL+F+GL   +SY+M   + +T+  Q
Sbjct: 1326 VIVVLVAVILLLVFLGLIFLVSYMMRTRRTLTQNTQ 1361


>gi|45827704 melanocortin 2 receptor accessory protein isoform
          beta [Homo sapiens]
          Length = 102

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 21 FTYYTAWVILLPFIDSQHVIHKYFLPRAYAVAIPLAAGLLLLLFVGLFISY 71
          + YY  ++ L+P  + +   HK+ +  A+ V+  LAA ++LL  + L++S+
Sbjct: 14 YEYYLDYLDLIPVDEKKLKAHKHSIVIAFWVS--LAAFVVLLFLILLYMSW 62


>gi|30520312 melanocortin 2 receptor accessory protein isoform
          alpha [Homo sapiens]
          Length = 172

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 21 FTYYTAWVILLPFIDSQHVIHKYFLPRAYAVAIPLAAGLLLLLFVGLFISY 71
          + YY  ++ L+P  + +   HK+ +  A+ V+  LAA ++LL  + L++S+
Sbjct: 14 YEYYLDYLDLIPVDEKKLKAHKHSIVIAFWVS--LAAFVVLLFLILLYMSW 62


>gi|58331222 ATPase, class VI, type 11C isoform b [Homo sapiens]
          Length = 1119

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 19   IIFTYYTAWVILLPFIDSQHVIHKYFLPRAYAVAIPLAAGLLLLLFVGLFISYVMLKTKR 78
            + F+++   +I  PF+  Q +   YF+      ++     ++LL+F+ LF   +++  K 
Sbjct: 1037 VFFSFFWGGIIW-PFLKQQRM---YFVFAQMLSSVSTWLAIILLIFISLFPEILLIVLKN 1092

Query: 79   VTKKA 83
            V +++
Sbjct: 1093 VRRRS 1097


>gi|40316839 ATPase, class VI, type 11C isoform a [Homo sapiens]
          Length = 1132

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 19   IIFTYYTAWVILLPFIDSQHVIHKYFLPRAYAVAIPLAAGLLLLLFVGLFISYVMLKTKR 78
            + F+++   +I  PF+  Q +   YF+      ++     ++LL+F+ LF   +++  K 
Sbjct: 1037 VFFSFFWGGIIW-PFLKQQRM---YFVFAQMLSSVSTWLAIILLIFISLFPEILLIVLKN 1092

Query: 79   VTKKA 83
            V +++
Sbjct: 1093 VRRRS 1097


>gi|53729332 membrane-associated ring finger (C3HC4) 2 isoform 1
           [Homo sapiens]
          Length = 246

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 8/24 (33%), Positives = 17/24 (70%)

Query: 7   QVVGLGLVAVSLIIFTYYTAWVIL 30
           Q+  +GL+A+++ +FT Y  W ++
Sbjct: 172 QLEAVGLIALTIALFTIYVLWTLV 195


>gi|53729330 membrane-associated ring finger (C3HC4) 2 isoform 1
           [Homo sapiens]
          Length = 246

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 8/24 (33%), Positives = 17/24 (70%)

Query: 7   QVVGLGLVAVSLIIFTYYTAWVIL 30
           Q+  +GL+A+++ +FT Y  W ++
Sbjct: 172 QLEAVGLIALTIALFTIYVLWTLV 195


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.332    0.145    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,496,845
Number of Sequences: 37866
Number of extensions: 80255
Number of successful extensions: 292
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 285
Number of HSP's gapped (non-prelim): 12
length of query: 84
length of database: 18,247,518
effective HSP length: 56
effective length of query: 28
effective length of database: 16,127,022
effective search space: 451556616
effective search space used: 451556616
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.