Guide to the Human Genome
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Name: LOC100289122 Sequence: fasta or formatted (230aa) NCBI GI: 239745569
Description:

PREDICTED: hypothetical protein XP_002344150

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         13           2
 C cysteine            3.0          7           1
 D aspartate           4.8         11           1
 E glutamate           3.5          8           1
 F phenylalanine       3.0          7           1
 G glycine            10.4         24           3
 H histidine           3.5          8           1
 I isoleucine          1.7          4           1
 K lysine              0.9          2           1
 L leucine            16.5         38           2
 M methionine          0.9          2           1
 N asparagine          1.7          4           1
 P proline             8.7         20           2
 Q glutamine           4.8         11           2
 R arginine            8.3         19           2
 S serine             10.0         23           2
 T threonine           3.5          8           1
 V valine              4.8         11           1
 W tryptophan          3.0          7           1
 Y tyrosine            1.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344150 
HPX-2                 0.024   PREDICTED: similar to double homeobox, 4 
LOC440017             0.022   PREDICTED: similar to double homeobox, 4 
LOC728022             0.022   PREDICTED: similar to double homeobox, 4 
LOC100289581          0.022   PREDICTED: hypothetical protein XP_002343082 
LOC440014             0.022   PREDICTED: similar to double homeobox, 4 
LOC399839             0.022   PREDICTED: similar to double homeobox, 4 
LOC440013             0.022   PREDICTED: similar to double homeobox, 4 
LOC441056             0.017   PREDICTED: double homeobox, 4-like 
FITM1                 0.015   fat-inducing transcript 1 
LOC653548             0.013   PREDICTED: double homeobox, 4-like 
DUX4                  0.013   double homeobox, 4 
TCF23                 0.013   transcription factor 23 
LOC728410             0.013   double homeobox, 4-like 
LOC653543             0.013   double homeobox, 4-like 
LOC653545             0.013   double homeobox, 4-like 
LOC653544             0.013   double homeobox, 4-like 
GPC5                  0.011   glypican 5 
PARD3B                0.011   par-3 partitioning defective 3 homolog B isoform a ...
PARD3B                0.011   par-3 partitioning defective 3 homolog B isoform c ...
FLJ36644              0.009   PREDICTED: hypothetical protein 
LILRB2                0.007   leukocyte immunoglobulin-like receptor, subfamily B...
LILRA1                0.007   leukocyte immunoglobulin-like receptor, subfamily A (...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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