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Search of human proteins with 42558252
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42558252 coiled-coil-helix-coiled-coil-helix domain
containing 1 [Homo sapiens]
(118 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42558252 coiled-coil-helix-coiled-coil-helix domain containin... 241 9e-65
gi|111494251 ras homolog gene family, member C precursor [Homo s... 28 1.2
gi|111494248 ras homolog gene family, member C precursor [Homo s... 28 1.2
gi|28395033 ras homolog gene family, member C precursor [Homo sa... 28 1.2
gi|14150070 coiled-coil-helix-coiled-coil-helix domain containin... 28 1.2
gi|71979925 COX19 cytochrome c oxidase assembly homolog [Homo sa... 28 1.5
gi|31543415 growth arrest and DNA-damage-inducible, gamma intera... 28 2.0
gi|4503925 GATA binding protein 1 [Homo sapiens] 27 2.6
gi|169207319 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|169207756 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|169207046 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|58761514 coiled-coil-helix-coiled-coil-helix domain containin... 27 4.5
gi|21264580 tetraspan 2 [Homo sapiens] 27 4.5
gi|46198304 coiled-coil-helix-coiled-coil-helix domain containin... 26 5.9
gi|34878787 ring finger protein 25 [Homo sapiens] 26 5.9
gi|10835049 ras homolog gene family, member A [Homo sapiens] 26 7.7
>gi|42558252 coiled-coil-helix-coiled-coil-helix domain containing 1
[Homo sapiens]
Length = 118
Score = 241 bits (615), Expect = 9e-65
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MATPSLRGRLARFGNPRKPVLKPNKPLILANRVGERRREKGEATCITEMSVMMACWKQNE 60
MATPSLRGRLARFGNPRKPVLKPNKPLILANRVGERRREKGEATCITEMSVMMACWKQNE
Sbjct: 1 MATPSLRGRLARFGNPRKPVLKPNKPLILANRVGERRREKGEATCITEMSVMMACWKQNE 60
Query: 61 FRDDACRKEIQGFLDCAARAQEARKMRSIQETLGESGSLLPNKLNKLLQRFPNKPYLS 118
FRDDACRKEIQGFLDCAARAQEARKMRSIQETLGESGSLLPNKLNKLLQRFPNKPYLS
Sbjct: 61 FRDDACRKEIQGFLDCAARAQEARKMRSIQETLGESGSLLPNKLNKLLQRFPNKPYLS 118
>gi|111494251 ras homolog gene family, member C precursor [Homo
sapiens]
Length = 193
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 23 PNKPLILANRVGERRREKGEATCITEMSVMMACWKQNEFRDDACRKEIQGFLDCAARAQE 82
PN P+IL + R+++ + +M + E RD A R G+L+C+A+ +E
Sbjct: 108 PNVPIILVGNKKDLRQDEHTRRELAKMKQEPV--RSEEGRDMANRISAFGYLECSAKTKE 165
Query: 83 ARKMRSIQETLGESG 97
+R + E +G
Sbjct: 166 G--VREVFEMATRAG 178
>gi|111494248 ras homolog gene family, member C precursor [Homo
sapiens]
Length = 193
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 23 PNKPLILANRVGERRREKGEATCITEMSVMMACWKQNEFRDDACRKEIQGFLDCAARAQE 82
PN P+IL + R+++ + +M + E RD A R G+L+C+A+ +E
Sbjct: 108 PNVPIILVGNKKDLRQDEHTRRELAKMKQEPV--RSEEGRDMANRISAFGYLECSAKTKE 165
Query: 83 ARKMRSIQETLGESG 97
+R + E +G
Sbjct: 166 G--VREVFEMATRAG 178
>gi|28395033 ras homolog gene family, member C precursor [Homo
sapiens]
Length = 193
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 23 PNKPLILANRVGERRREKGEATCITEMSVMMACWKQNEFRDDACRKEIQGFLDCAARAQE 82
PN P+IL + R+++ + +M + E RD A R G+L+C+A+ +E
Sbjct: 108 PNVPIILVGNKKDLRQDEHTRRELAKMKQEPV--RSEEGRDMANRISAFGYLECSAKTKE 165
Query: 83 ARKMRSIQETLGESG 97
+R + E +G
Sbjct: 166 G--VREVFEMATRAG 178
>gi|14150070 coiled-coil-helix-coiled-coil-helix domain containing 5
[Homo sapiens]
Length = 110
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 45 CITEMSVMMACWKQNEFRDDACRKEIQGFLDCAARAQEARKMRSIQ 90
C C +QNE C + ++ FL CA + Q R +++
Sbjct: 58 CAQPFEAFEECLRQNEAAVGNCAEHMRRFLQCAEQVQPPRSPATVE 103
>gi|71979925 COX19 cytochrome c oxidase assembly homolog [Homo
sapiens]
Length = 90
Score = 28.1 bits (61), Expect = 1.5
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 45 CITEMSVMMACWKQNEFRDDACRKEIQGFLDCAARAQEARKMRSIQETLG 94
C + M C N F + CRKE + +L+C R + ++ E LG
Sbjct: 30 CKSFKEKFMKCLHNNNFENALCRKESKEYLEC--RMERKLMLQEPLEKLG 77
>gi|31543415 growth arrest and DNA-damage-inducible, gamma
interacting protein 1 [Homo sapiens]
Length = 222
Score = 27.7 bits (60), Expect = 2.0
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 29 LANRVGERRREKGEATCITEMSVMMACWKQNEFRDDACRKEIQGFLDCAARAQEARKMRS 88
LA R RE+ A C+ +M M+ W+Q + R++ + + A + + AR
Sbjct: 108 LAEEQKRREREQHIAECMAKMPQMIVNWQQQQ-RENWEKAQ-------ADKERRARLQAE 159
Query: 89 IQETLGESGSLLPNKLNKLLQRFPNK 114
QE LG + +LLQ K
Sbjct: 160 AQELLGYQVDPRSARFQELLQDLEKK 185
>gi|4503925 GATA binding protein 1 [Homo sapiens]
Length = 413
Score = 27.3 bits (59), Expect = 2.6
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
Query: 8 GRLARFGNPRKPVLKPNKPLILANRVGERRREKGEATCITEMSVMMACWKQNEFRDDAC 66
G + +P+++P K LI++ R G + C + W++N D C
Sbjct: 229 GLYHKMNGQNRPLIRPKKRLIVSKRAGTQ--------CTNCQTTTTTLWRRNASGDPVC 279
>gi|169207319 PREDICTED: hypothetical protein [Homo sapiens]
Length = 828
Score = 26.6 bits (57), Expect = 4.5
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 66 CRKEIQGFL-DCAARAQEARKMRSIQETLGESGSLLPNKLNKLLQRFPN 113
C +E + FL D A ++ +MR L E S+ NKL LL+ PN
Sbjct: 63 CNEEAKIFLKDIAVAVKKLEEMRKATIDLLEIESMELNKLYYLLETLPN 111
>gi|169207756 PREDICTED: hypothetical protein [Homo sapiens]
Length = 828
Score = 26.6 bits (57), Expect = 4.5
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 66 CRKEIQGFL-DCAARAQEARKMRSIQETLGESGSLLPNKLNKLLQRFPN 113
C +E + FL D A ++ +MR L E S+ NKL LL+ PN
Sbjct: 63 CNEEAKIFLKDIAVAVKKLEEMRKATIDLLEIESMELNKLYYLLETLPN 111
>gi|169207046 PREDICTED: hypothetical protein [Homo sapiens]
Length = 828
Score = 26.6 bits (57), Expect = 4.5
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 66 CRKEIQGFL-DCAARAQEARKMRSIQETLGESGSLLPNKLNKLLQRFPN 113
C +E + FL D A ++ +MR L E S+ NKL LL+ PN
Sbjct: 63 CNEEAKIFLKDIAVAVKKLEEMRKATIDLLEIESMELNKLYYLLETLPN 111
>gi|58761514 coiled-coil-helix-coiled-coil-helix domain containing
7 isoform b [Homo sapiens]
Length = 110
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/57 (21%), Positives = 24/57 (42%)
Query: 20 VLKPNKPLILANRVGERRREKGEATCITEMSVMMACWKQNEFRDDACRKEIQGFLDC 76
V+ P+K + V +R R+ C++E C +N + + C + +C
Sbjct: 16 VMLPSKKTVRMPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNC 72
>gi|21264580 tetraspan 2 [Homo sapiens]
Length = 221
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 38 REKGEATCITEMSVMMACWKQ-NEFRDDACRKEIQGFLDC 76
R KG T IT S C K+ +E C KE+ G +C
Sbjct: 135 RGKGNGTLITFHSTFQCCGKESSEQVQPTCPKELLGHKNC 174
>gi|46198304 coiled-coil-helix-coiled-coil-helix domain containing
8 [Homo sapiens]
Length = 87
Score = 26.2 bits (56), Expect = 5.9
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 66 CRKEIQGFLDCAARAQEARKMRSIQETLGESGS 98
C+ ++Q F DC + Q+AR+ +Q ++G+
Sbjct: 54 CQPQVQAFKDCMSE-QQARRQEELQRRQEQAGA 85
>gi|34878787 ring finger protein 25 [Homo sapiens]
Length = 459
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 4 PSLRGRLARFGNPRKPVLKPNKPLILANRVGERRREKG 41
P R R G +K +L P KP R ERR KG
Sbjct: 320 PGTRSNQQRLGETQKAMLDPPKPSRGPWRQPERRHPKG 357
>gi|10835049 ras homolog gene family, member A [Homo sapiens]
Length = 193
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 23 PNKPLILANRVGERRREKGEATCITEMSVMMACWKQNEFRDDACRKEIQGFLDCAARAQE 82
PN P+IL + R ++ + +M K E RD A R G+++C+A+ ++
Sbjct: 108 PNVPIILVGNKKDLRNDEHTRRELAKMKQEPV--KPEEGRDMANRIGAFGYMECSAKTKD 165
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,393,372
Number of Sequences: 37866
Number of extensions: 159422
Number of successful extensions: 359
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 354
Number of HSP's gapped (non-prelim): 16
length of query: 118
length of database: 18,247,518
effective HSP length: 88
effective length of query: 30
effective length of database: 14,915,310
effective search space: 447459300
effective search space used: 447459300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Table of Contents |
Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.