Search of human proteins with 40068500

Search of human proteins with 40068500

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|40068500 THAP domain containing, apoptosis associated
protein 1 isoform 2 [Homo sapiens]
         (53 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|40068500 THAP domain containing, apoptosis associated protein...   118   1e-27
gi|8922446 THAP domain containing, apoptosis associated protein ...    57   3e-09
gi|13899259 THAP domain containing, apoptosis associated protein...    28   1.2  
gi|193804923 hypothetical protein LOC55086 [Homo sapiens]              26   5.9  
gi|4507379 TATA box binding protein [Homo sapiens]                     26   7.7  
gi|94536788 THAP domain containing 9 [Homo sapiens]                    26   7.7  

>gi|40068500 THAP domain containing, apoptosis associated protein
          1 isoform 2 [Homo sapiens]
          Length = 53

 Score =  118 bits (295), Expect = 1e-27
 Identities = 53/53 (100%), Positives = 53/53 (100%)

Query: 1  MVQSCSAYGCKNRYDKDKPVSFHKKKIFWSHRNSFPHLLYRLLFPRLMLLLDY 53
          MVQSCSAYGCKNRYDKDKPVSFHKKKIFWSHRNSFPHLLYRLLFPRLMLLLDY
Sbjct: 1  MVQSCSAYGCKNRYDKDKPVSFHKKKIFWSHRNSFPHLLYRLLFPRLMLLLDY 53


>gi|8922446 THAP domain containing, apoptosis associated protein 1
          isoform 1 [Homo sapiens]
          Length = 213

 Score = 57.0 bits (136), Expect = 3e-09
 Identities = 24/24 (100%), Positives = 24/24 (100%)

Query: 1  MVQSCSAYGCKNRYDKDKPVSFHK 24
          MVQSCSAYGCKNRYDKDKPVSFHK
Sbjct: 1  MVQSCSAYGCKNRYDKDKPVSFHK 24


>gi|13899259 THAP domain containing, apoptosis associated protein
          2 [Homo sapiens]
          Length = 228

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 1  MVQSCSAYGCKNRYDKDKPVSFHKKKIFWSHRNSFPHLLYRLLF 44
          M  +C+A GC   Y+K   +SFH+  +    R  +  L+ R  F
Sbjct: 1  MPTNCAAAGCATTYNKHINISFHRFPLDPKRRKEWVRLVRRKNF 44


>gi|193804923 hypothetical protein LOC55086 [Homo sapiens]
          Length = 855

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 11  KNRYDKDKPVSFHKKKIFWSHRNSFPHLLYRLL 43
           ++ +   K +S    ++ W++R +FP LL R+L
Sbjct: 210 EHNFSDTKIISLSHLEMTWTNRRNFPALLVRIL 242


>gi|4507379 TATA box binding protein [Homo sapiens]
          Length = 339

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 9/17 (52%), Positives = 15/17 (88%)

Query: 35  FPHLLYRLLFPRLMLLL 51
           FP L+YR++ PR++LL+
Sbjct: 288 FPGLIYRMIKPRIVLLI 304


>gi|94536788 THAP domain containing 9 [Homo sapiens]
          Length = 903

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)

Query: 1  MVQSCSAYGCKNR---YDKDKPVSFHK 24
          M +SCSA GC  R     +++ +SFH+
Sbjct: 1  MTRSCSAVGCSTRDTVLSRERGLSFHQ 27


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.331    0.143    0.483 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,193,820
Number of Sequences: 37866
Number of extensions: 63925
Number of successful extensions: 221
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 6
length of query: 53
length of database: 18,247,518
effective HSP length: 27
effective length of query: 26
effective length of database: 17,225,136
effective search space: 447853536
effective search space used: 447853536
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.