Search of human proteins with 39812492

Search of human proteins with 39812492

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|39812492 TH1-like protein [Homo sapiens]
         (590 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|39812492 TH1-like protein [Homo sapiens]                          1182   0.0  
gi|167614502 protein phosphatase 1, regulatory (inhibitor) subun...    34   0.33 
gi|209969760 heat shock factor binding protein 1-like [Homo sapi...    33   0.73 
gi|226528212 short coiled-coil protein isoform 4 [Homo sapiens]        32   1.6  
gi|226528328 short coiled-coil protein isoform 4 [Homo sapiens]        32   1.6  
gi|226528258 short coiled-coil protein isoform 4 [Homo sapiens]        32   1.6  
gi|55741655 anoctamin 8 [Homo sapiens]                                 32   2.1  
gi|38093643 SET and MYND domain containing 1 [Homo sapiens]            32   2.1  
gi|94536836 2-oxoglutarate and iron-dependent oxygenase domain c...    31   2.8  
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom...    30   4.8  
gi|110347463 human immunodeficiency virus type I enhancer bindin...    30   6.2  
gi|60097902 filaggrin [Homo sapiens]                                   30   8.1  
gi|206725456 zinc activated ligand-gated ion channel [Homo sapiens]    30   8.1  
gi|158341646 hypothetical protein LOC729830 [Homo sapiens]             30   8.1  

>gi|39812492 TH1-like protein [Homo sapiens]
          Length = 590

 Score = 1182 bits (3057), Expect = 0.0
 Identities = 590/590 (100%), Positives = 590/590 (100%)

Query: 1   MAGAVPGAIMDEDYYGSAAEWGDEADGGQQEDDSGEGEDDAEVQQECLHKFSTRDYIMEP 60
           MAGAVPGAIMDEDYYGSAAEWGDEADGGQQEDDSGEGEDDAEVQQECLHKFSTRDYIMEP
Sbjct: 1   MAGAVPGAIMDEDYYGSAAEWGDEADGGQQEDDSGEGEDDAEVQQECLHKFSTRDYIMEP 60

Query: 61  SIFNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLK 120
           SIFNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLK
Sbjct: 61  SIFNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLK 120

Query: 121 SLLIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLIS 180
           SLLIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLIS
Sbjct: 121 SLLIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLIS 180

Query: 181 DAGYQGEITSVSTACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYLF 240
           DAGYQGEITSVSTACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYLF
Sbjct: 181 DAGYQGEITSVSTACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYLF 240

Query: 241 AQAMMSVLAQEEQGGSAVRRIAQEVQRFAQEKGHDASQITLALGTAASYPRACQALGAML 300
           AQAMMSVLAQEEQGGSAVRRIAQEVQRFAQEKGHDASQITLALGTAASYPRACQALGAML
Sbjct: 241 AQAMMSVLAQEEQGGSAVRRIAQEVQRFAQEKGHDASQITLALGTAASYPRACQALGAML 300

Query: 301 SKGALNPADITVLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGARINQDHKHKYIHIL 360
           SKGALNPADITVLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGARINQDHKHKYIHIL
Sbjct: 301 SKGALNPADITVLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGARINQDHKHKYIHIL 360

Query: 361 AYAASVVETWKKNKRVSINKDELKSTSKAVETVHNLCCNENKGASELVAELSTLYQCIRF 420
           AYAASVVETWKKNKRVSINKDELKSTSKAVETVHNLCCNENKGASELVAELSTLYQCIRF
Sbjct: 361 AYAASVVETWKKNKRVSINKDELKSTSKAVETVHNLCCNENKGASELVAELSTLYQCIRF 420

Query: 421 PVVAMGVLKWVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETE 480
           PVVAMGVLKWVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETE
Sbjct: 421 PVVAMGVLKWVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETE 480

Query: 481 HSQLDVMEQLELKKTLLDRMVHLLSRGYVLPVVSYIRKCLEKLDTDISLIRYFVTEVLDV 540
           HSQLDVMEQLELKKTLLDRMVHLLSRGYVLPVVSYIRKCLEKLDTDISLIRYFVTEVLDV
Sbjct: 481 HSQLDVMEQLELKKTLLDRMVHLLSRGYVLPVVSYIRKCLEKLDTDISLIRYFVTEVLDV 540

Query: 541 IAPPYTSDFVQLFLPILENDSIAGTIKTEGEHDPVTEFIAHCKSNFIMVN 590
           IAPPYTSDFVQLFLPILENDSIAGTIKTEGEHDPVTEFIAHCKSNFIMVN
Sbjct: 541 IAPPYTSDFVQLFLPILENDSIAGTIKTEGEHDPVTEFIAHCKSNFIMVN 590


>gi|167614502 protein phosphatase 1, regulatory (inhibitor) subunit
           3A [Homo sapiens]
          Length = 1122

 Score = 34.3 bits (77), Expect = 0.33
 Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 20/97 (20%)

Query: 472 LLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGYVLPVVS----------YIRKCLE 521
           +L  LF+   S+ D+M+QL+++K +L+    LL    +  ++           Y+R  L+
Sbjct: 105 VLAPLFDLPSSKEDLMQQLQIQKAILESTESLLGSTSIKGIIRVLNVSFEKLVYVRMSLD 164

Query: 522 KLDTDISLIRYFVTEVLD----------VIAPPYTSD 548
              T   ++  +V    D          V+ PPY  D
Sbjct: 165 DWQTHYDILAEYVPNSCDGETDQFSFKIVLVPPYQKD 201


>gi|209969760 heat shock factor binding protein 1-like [Homo
           sapiens]
          Length = 74

 Score = 33.1 bits (74), Expect = 0.73
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 6/55 (10%)

Query: 77  ENVIQLLSENYTAVAQTVNLLAEWL------IQTGVEPVQVQETVENHLKSLLIK 125
           EN+ Q L E++ A+  T+NL  E +      +Q  V+ + VQ  +EN +K  ++K
Sbjct: 19  ENLFQELQEHFQALTATLNLRMEEMGNRIEDLQKNVKDLMVQAGIENSIKEQMLK 73


>gi|226528212 short coiled-coil protein isoform 4 [Homo sapiens]
          Length = 122

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 444 QTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLEL--KKTLLDRMV 501
           + D T  +++L D+I    ++L+P+   LL K+   +   +D   Q+EL  K  L+++++
Sbjct: 9   EEDSTFTNISLADDIDHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVL 68

Query: 502 HL 503
            L
Sbjct: 69  EL 70


>gi|226528328 short coiled-coil protein isoform 4 [Homo sapiens]
          Length = 122

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 444 QTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLEL--KKTLLDRMV 501
           + D T  +++L D+I    ++L+P+   LL K+   +   +D   Q+EL  K  L+++++
Sbjct: 9   EEDSTFTNISLADDIDHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVL 68

Query: 502 HL 503
            L
Sbjct: 69  EL 70


>gi|226528258 short coiled-coil protein isoform 4 [Homo sapiens]
          Length = 122

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 444 QTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLEL--KKTLLDRMV 501
           + D T  +++L D+I    ++L+P+   LL K+   +   +D   Q+EL  K  L+++++
Sbjct: 9   EEDSTFTNISLADDIDHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVL 68

Query: 502 HL 503
            L
Sbjct: 69  EL 70


>gi|55741655 anoctamin 8 [Homo sapiens]
          Length = 1232

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 8   AIMDEDYYGSAAEWGDEADGGQQEDDSGEGEDDAEVQQE 46
           A+++    G   E GD   GG++ED+  E E+D E +++
Sbjct: 560 ALVERRRAGEGGEEGDGPPGGKEEDEDDEEEEDEEEEED 598


>gi|38093643 SET and MYND domain containing 1 [Homo sapiens]
          Length = 490

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 7/67 (10%)

Query: 482 SQLDVMEQLELKKTLLDRMVHLLSRGYVLPVVSYIRKCLEK-----LDTDISLIRY--FV 534
           SQ  V E ++  K  L+++    S G    VV   R+CLEK      DT+I ++R    V
Sbjct: 298 SQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNIYMLRMLSIV 357

Query: 535 TEVLDVI 541
           +EVL  +
Sbjct: 358 SEVLSYL 364


>gi|94536836 2-oxoglutarate and iron-dependent oxygenase domain
           containing 1 [Homo sapiens]
          Length = 542

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 34/167 (20%), Positives = 61/167 (36%), Gaps = 13/167 (7%)

Query: 20  EWGDEADGGQQEDDSGEGEDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENV 79
           EW       ++  +  E     E+ +EC+  F +    +  S F  LK +F A    + +
Sbjct: 317 EWSSRGPPNKRFYEKAEESKLPEILKECMKLFRSEALFLLLSNFTGLKLHFLAPSEEDEM 376

Query: 80  IQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSLLIKHFDPRKADSIFTEE 139
                 N    A+T ++  E    +  EP   Q  + N+ +    +  DP   ++   +E
Sbjct: 377 ------NDKKEAETTDITEEGTSHSPPEPENNQMAISNNSQQ-SNEQTDPEPEENETKKE 429

Query: 140 GETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQG 186
              P    ++     W+   Y L   H       F + LI   G +G
Sbjct: 430 SSVPMCQGEL---RHWKTGHYTLIHDHSKA---EFALDLILYCGCEG 470


>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
           sapiens]
          Length = 1152

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 11  DEDYYGSAAEWGDEADG-GQQEDDSGEGEDDAEVQQE 46
           +E   G   E G+E +G G++E+  GEGE++ E + E
Sbjct: 860 EEGEEGEGEEEGEEGEGEGEEEEGEGEGEEEGEGEGE 896



 Score = 29.6 bits (65), Expect = 8.1
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 2/38 (5%)

Query: 11  DEDYYGSAAEWGDEADG-GQQEDDSGEGED-DAEVQQE 46
           +E+  G   E G+E +G G++E+  GEGED + E ++E
Sbjct: 914 EEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEEE 951


>gi|110347463 human immunodeficiency virus type I enhancer binding
            protein 2 [Homo sapiens]
          Length = 2446

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 13   DYYGSAAEWGDEADGGQQEDDSGEGEDDAEVQQECLHKFSTRDYIMEPSIFNTL 66
            D+  S AE  D  DG   +DD  E EDD + Q +   K  +R    +P  F++L
Sbjct: 1894 DHQFSDAEESDGEDGDDNDDDD-EDEDDFDDQGDLTPKTRSRSTSPQPPRFSSL 1946


>gi|60097902 filaggrin [Homo sapiens]
          Length = 4061

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 7/53 (13%)

Query: 8    AIMDEDYYGSAAEWGDEADGGQQEDD----SGEGEDDAEVQQECLHKFSTRDY 56
            A+ D  ++GS+     +++G  +E D    SG G+D    Q    H+ S RD+
Sbjct: 1057 AVRDSGHWGSSGSQASDSEGHSEESDTQSVSGHGQDGPHQQS---HQESARDW 1106


>gi|206725456 zinc activated ligand-gated ion channel [Homo sapiens]
          Length = 412

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 430 WVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLH 466
           WVDW    P+    Q  H  ++LAL  E +   +LLH
Sbjct: 127 WVDWRDQSPQARVDQDGHVKLNLALATETNCNFELLH 163


>gi|158341646 hypothetical protein LOC729830 [Homo sapiens]
          Length = 1040

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 5/49 (10%)

Query: 326 ELIRVPAFLDLFMQSLFKPG-----ARINQDHKHKYIHILAYAASVVET 369
           E++   A+LDLF++S+ +P       R    H+H+ +HIL    S + T
Sbjct: 331 EVMTTTAYLDLFLRSISEPALLEIFLRFILLHQHENVHILDTLTSRINT 379


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,719,197
Number of Sequences: 37866
Number of extensions: 913272
Number of successful extensions: 3155
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3121
Number of HSP's gapped (non-prelim): 42
length of query: 590
length of database: 18,247,518
effective HSP length: 108
effective length of query: 482
effective length of database: 14,157,990
effective search space: 6824151180
effective search space used: 6824151180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.