Guide to the Human Genome
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Name: MGAT5B Sequence: fasta or formatted (790aa) NCBI GI: 39812181
Description:

N-acetylglucosaminyltranferase VB isoform 1

Referenced in:

Protein Glycosylation

Other entries for this name:
alt prot [801aa] N-acetylglucosaminyltranferase VB isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         58           2
 C cysteine            2.8         22           1
 D aspartate           3.8         30           1
 E glutamate           6.1         48           2
 F phenylalanine       5.8         46           2
 G glycine             7.2         57           2
 H histidine           3.2         25           1
 I isoleucine          3.7         29           1
 K lysine              4.9         39           2
 L leucine            10.6         84           3
 M methionine          3.0         24           1
 N asparagine          3.2         25           2
 P proline             7.6         60           2
 Q glutamine           4.6         36           2
 R arginine            6.3         50           2
 S serine              5.8         46           2
 T threonine           4.4         35           1
 V valine              4.9         39           2
 W tryptophan          1.6         13           1
 Y tyrosine            3.0         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   N-acetylglucosaminyltranferase VB isoform 1 
MGAT5B                0.974   N-acetylglucosaminyltranferase VB isoform 2 
MGAT5                 0.370   N-acetylglucosaminyltransferase V 
MKRN3                 0.004   makorin ring finger protein 3 
SSPO                  0.004   SCO-spondin 
LOC100292088          0.004   PREDICTED: hypothetical protein XP_002346321 
RTKN                  0.003   rhotekin isoform c 
RTKN                  0.003   rhotekin isoform a 
RTKN                  0.003   rhotekin isoform b 
EFCAB6                0.003   CAP-binding protein complex interacting protein 1 is...
EFCAB6                0.003   CAP-binding protein complex interacting protein 1 is...
MALT1                 0.003   mucosa associated lymphoid tissue lymphoma transloca...
MALT1                 0.003   mucosa associated lymphoid tissue lymphoma translocat...
CD163                 0.003   CD163 antigen isoform b 
CD163                 0.003   CD163 antigen isoform a 
P2RX2                 0.003   purinergic receptor P2X2 isoform B 
P2RX2                 0.003   purinergic receptor P2X2 isoform H 
P2RX2                 0.003   purinergic receptor P2X2 isoform I 
P2RX2                 0.003   purinergic receptor P2X2 isoform D 
P2RX2                 0.003   purinergic receptor P2X2 isoform A 
P2RX2                 0.003   purinergic receptor P2X2 isoform C 
WIPF2                 0.003   WIRE protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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