Search of human proteins with 38455391

Search of human proteins with 38455391

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|38455391 ribonuclease H2, large subunit [Homo sapiens]
         (299 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|38455391 ribonuclease H2, large subunit [Homo sapiens]             602   e-172
gi|4503293 DEAH (Asp-Glu-Ala-His) box polypeptide 16 [Homo sapiens]    33   0.40 
gi|28610147 interleukin 6 signal transducer isoform 1 precursor ...    31   1.2  
gi|75677365 dynein heavy chain domain 3 [Homo sapiens]                 30   2.0  
gi|13435366 desmocollin 2 isoform Dsc2b preproprotein [Homo sapi...    30   2.6  
gi|13435364 desmocollin 2 isoform Dsc2a preproprotein [Homo sapi...    30   2.6  
gi|4505541 USO1 homolog, vesicle docking protein [Homo sapiens]        29   5.8  
gi|87578396 microtubule-associated protein 2 isoform 1 [Homo sap...    28   9.8  
gi|15451914 BAI1-associated protein 3 [Homo sapiens]                   28   9.8  

>gi|38455391 ribonuclease H2, large subunit [Homo sapiens]
          Length = 299

 Score =  602 bits (1552), Expect = e-172
 Identities = 299/299 (100%), Positives = 299/299 (100%)

Query: 1   MDLSELERDNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLPRLADL 60
           MDLSELERDNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLPRLADL
Sbjct: 1   MDLSELERDNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLPRLADL 60

Query: 61  EALKVADSKTLLESERERLFAKMEDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDT 120
           EALKVADSKTLLESERERLFAKMEDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDT
Sbjct: 61  EALKVADSKTLLESERERLFAKMEDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDT 120

Query: 121 ATGLIQYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASI 180
           ATGLIQYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASI
Sbjct: 121 ATGLIQYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASI 180

Query: 181 CAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRT 240
           CAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRT
Sbjct: 181 CAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRT 240

Query: 241 AQTILEKEAEDVIWEDSASENQEGLRKITSYFLNEGSQARPRSSHRYFLERGLESATSL 299
           AQTILEKEAEDVIWEDSASENQEGLRKITSYFLNEGSQARPRSSHRYFLERGLESATSL
Sbjct: 241 AQTILEKEAEDVIWEDSASENQEGLRKITSYFLNEGSQARPRSSHRYFLERGLESATSL 299


>gi|4503293 DEAH (Asp-Glu-Ala-His) box polypeptide 16 [Homo sapiens]
          Length = 1041

 Score = 32.7 bits (73), Expect = 0.40
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 194 QFVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVI 253
           +FV++L+D DT   SG   D   + W K   + V   P   R + R A+ +LEK     +
Sbjct: 42  EFVQRLRDTDTLDLSGPARDFALRLWNKVPRKAVVEKP--ARAAEREARALLEKNRSYRL 99

Query: 254 WEDSASENQEGLRKITS 270
            EDS   ++E + +  S
Sbjct: 100 LEDSEESSEETVSRAGS 116


>gi|28610147 interleukin 6 signal transducer isoform 1 precursor
           [Homo sapiens]
          Length = 918

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 15/61 (24%)

Query: 133 VNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKK 192
           + VT V+ D  G PE+ +A L+Q+ P    TV+ K               KV +++AV +
Sbjct: 494 ITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTK---------------KVGKNEAVLE 538

Query: 193 W 193
           W
Sbjct: 539 W 539


>gi|75677365 dynein heavy chain domain 3 [Homo sapiens]
          Length = 4427

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 252  VIWEDSASENQEGLRKITSYFLN-EGSQARPRSSHRYFLERGLESATS 298
            +IW   AS ++EG ++I SY    EGS     + + YF++  + S TS
Sbjct: 2321 MIWSVCASVDEEGRKRIDSYLREIEGSFPNKDTVYEYFVDPKIRSWTS 2368


>gi|13435366 desmocollin 2 isoform Dsc2b preproprotein [Homo
           sapiens]
          Length = 847

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 132 GVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVK 191
           G  V QV       P+T   RL+ S  G +V       +++P     +  +     + + 
Sbjct: 259 GTTVGQVCATDKDEPDTMHTRLKYSIIG-QVPPSPTLFSMHPTTGVITTTSSQLDRELID 317

Query: 192 KWQFVEKLQDLDTDY 206
           K+Q   K+QD+D  Y
Sbjct: 318 KYQLKIKVQDMDGQY 332


>gi|13435364 desmocollin 2 isoform Dsc2a preproprotein [Homo
           sapiens]
          Length = 901

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 132 GVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVK 191
           G  V QV       P+T   RL+ S  G +V       +++P     +  +     + + 
Sbjct: 259 GTTVGQVCATDKDEPDTMHTRLKYSIIG-QVPPSPTLFSMHPTTGVITTTSSQLDRELID 317

Query: 192 KWQFVEKLQDLDTDY 206
           K+Q   K+QD+D  Y
Sbjct: 318 KYQLKIKVQDMDGQY 332


>gi|4505541 USO1 homolog, vesicle docking protein [Homo sapiens]
          Length = 962

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 85  DTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVT 136
           D++ +G+ALD+L  N+IS      V+ N    S D  +   +  + Q  NVT
Sbjct: 75  DSEIIGYALDILY-NIISNEEEEEVEENSTRQSEDLGSQFTEIFIKQQENVT 125


>gi|87578396 microtubule-associated protein 2 isoform 1 [Homo sapiens]
          Length = 1827

 Score = 28.1 bits (61), Expect = 9.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 11   TGRCRLSSPVPAVCRKEPCVLGVDEAGR 38
            TGR R+S+P   V +KEP  +  DE  R
Sbjct: 1433 TGRGRISTPERKVAKKEPSTVSRDEVRR 1460


>gi|15451914 BAI1-associated protein 3 [Homo sapiens]
          Length = 1187

 Score = 28.1 bits (61), Expect = 9.8
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 12/91 (13%)

Query: 152 RLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDT----DYG 207
           R   S PG +    A A    P + A  +  +V RDQA  KW+ ++   D+DT    D  
Sbjct: 674 RFWDSIPGRDSRSLALAGIHAPFLPAVKLWFQVLRDQA--KWR-LQGAVDMDTLEPVDAS 730

Query: 208 SGYPNDPKTKAWLKEHVEPVFGFPQFVRFSW 238
           S + +   T      H++ +     +VR +W
Sbjct: 731 SRHSSSAATAGLCLSHIQEL-----WVRLAW 756


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,350,709
Number of Sequences: 37866
Number of extensions: 492590
Number of successful extensions: 1065
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1061
Number of HSP's gapped (non-prelim): 9
length of query: 299
length of database: 18,247,518
effective HSP length: 102
effective length of query: 197
effective length of database: 14,385,186
effective search space: 2833881642
effective search space used: 2833881642
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.