Guide to the Human Genome
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Name: RNASEH2A Sequence: fasta or formatted (299aa) NCBI GI: 38455391
Description:

ribonuclease H2, large subunit

Referenced in:

RNases and RNA Stability

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         25           2
 C cysteine            2.0          6           1
 D aspartate           6.4         19           1
 E glutamate           7.7         23           1
 F phenylalanine       3.7         11           1
 G glycine             5.7         17           1
 H histidine           1.0          3           1
 I isoleucine          2.7          8           1
 K lysine              5.4         16           2
 L leucine            10.4         31           2
 M methionine          1.7          5           1
 N asparagine          2.7          8           1
 P proline             5.4         16           1
 Q glutamine           4.3         13           2
 R arginine            6.0         18           1
 S serine              7.7         23           2
 T threonine           5.4         16           1
 V valine              8.7         26           2
 W tryptophan          1.7          5           1
 Y tyrosine            3.3         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ribonuclease H2, large subunit 
DHX16                 0.014   DEAH (Asp-Glu-Ala-His) box polypeptide 16 
IL6ST                 0.010   interleukin 6 signal transducer isoform 1 precursor ...
DNAH2                 0.009   dynein heavy chain domain 3 
DSC2                  0.009   desmocollin 2 isoform Dsc2b preproprotein 
DSC2                  0.009   desmocollin 2 isoform Dsc2a preproprotein 
USO1                  0.007   USO1 homolog, vesicle docking protein 
MAP2                  0.005   microtubule-associated protein 2 isoform 1 
BAIAP3                0.005   BAI1-associated protein 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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