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Search of human proteins with 38348330
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38348330 LanC lantibiotic synthetase component C-like 3
[Homo sapiens]
(388 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38348330 LanC lantibiotic synthetase component C-like 3 [Homo... 796 0.0
gi|8923911 LanC lantibiotic synthetase component C-like 2 [Homo ... 184 2e-46
gi|5174445 lanthionine synthetase C-like protein 1 [Homo sapiens] 177 1e-44
gi|212274477 lanthionine synthetase C-like protein 1 [Homo sapiens] 177 1e-44
gi|212274337 lanthionine synthetase C-like protein 1 [Homo sapiens] 177 1e-44
gi|110224458 solute carrier family 12, member 6 isoform e [Homo ... 30 3.7
gi|110224456 solute carrier family 12, member 6 isoform d [Homo ... 30 3.7
gi|110224454 solute carrier family 12, member 6 isoform c [Homo ... 30 3.7
gi|110224452 solute carrier family 12, member 6 isoform c [Homo ... 30 3.7
gi|4826780 solute carrier family 12, member 6 isoform b [Homo sa... 30 3.7
gi|110224449 solute carrier family 12, member 6 isoform a [Homo ... 30 3.7
gi|98986321 gliomedin [Homo sapiens] 30 3.7
gi|239754797 PREDICTED: hypothetical protein [Homo sapiens] 30 4.8
gi|239743415 PREDICTED: hypothetical protein [Homo sapiens] 30 4.8
gi|224548927 G-protein signaling modulator 1 (AGS3-like, C. eleg... 29 6.3
gi|224548925 G-protein signaling modulator 1 (AGS3-like, C. eleg... 29 6.3
gi|19924161 RPB5-mediating protein isoform b [Homo sapiens] 29 6.3
gi|19924159 RPB5-mediating protein isoform a [Homo sapiens] 29 6.3
gi|110347429 mediator complex subunit 12 [Homo sapiens] 29 8.3
>gi|38348330 LanC lantibiotic synthetase component C-like 3 [Homo
sapiens]
Length = 388
Score = 796 bits (2056), Expect = 0.0
Identities = 388/388 (100%), Positives = 388/388 (100%)
Query: 1 MDTKRCFANRFDDYQGSLLAGQCEEAVAPLVTATIERILQELPPLGGGAEARGATAGASA 60
MDTKRCFANRFDDYQGSLLAGQCEEAVAPLVTATIERILQELPPLGGGAEARGATAGASA
Sbjct: 1 MDTKRCFANRFDDYQGSLLAGQCEEAVAPLVTATIERILQELPPLGGGAEARGATAGASA 60
Query: 61 CQGGLYGGVAGVAYMLYHVSQSPLFATARERYLRSAKRLIDACARAEEWGEPDADTRAAF 120
CQGGLYGGVAGVAYMLYHVSQSPLFATARERYLRSAKRLIDACARAEEWGEPDADTRAAF
Sbjct: 61 CQGGLYGGVAGVAYMLYHVSQSPLFATARERYLRSAKRLIDACARAEEWGEPDADTRAAF 120
Query: 121 LLGGAGVYAVATLVYHALGRSDYVQPLGKFRALCAVCAPVSFLECGSDELFVGRAGYLCA 180
LLGGAGVYAVATLVYHALGRSDYVQPLGKFRALCAVCAPVSFLECGSDELFVGRAGYLCA
Sbjct: 121 LLGGAGVYAVATLVYHALGRSDYVQPLGKFRALCAVCAPVSFLECGSDELFVGRAGYLCA 180
Query: 181 ALVLKQKLAQEVLTPAQIKSICQAILDSGKQYAIKKRKPFPLMYSYYGTEYLGAAHGLSS 240
ALVLKQKLAQEVLTPAQIKSICQAILDSGKQYAIKKRKPFPLMYSYYGTEYLGAAHGLSS
Sbjct: 181 ALVLKQKLAQEVLTPAQIKSICQAILDSGKQYAIKKRKPFPLMYSYYGTEYLGAAHGLSS 240
Query: 241 ILQMLLSYHEHLKPSDRELVWQSVDFLMEQEQNCNWPPELGETIERENELVHWCHGAPGI 300
ILQMLLSYHEHLKPSDRELVWQSVDFLMEQEQNCNWPPELGETIERENELVHWCHGAPGI
Sbjct: 241 ILQMLLSYHEHLKPSDRELVWQSVDFLMEQEQNCNWPPELGETIERENELVHWCHGAPGI 300
Query: 301 AYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYVFLLLYRLTGNS 360
AYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYVFLLLYRLTGNS
Sbjct: 301 AYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYVFLLLYRLTGNS 360
Query: 361 KYIYRAQSSFPVNLIKMEHLLYTRQHCF 388
KYIYRAQSSFPVNLIKMEHLLYTRQHCF
Sbjct: 361 KYIYRAQSSFPVNLIKMEHLLYTRQHCF 388
>gi|8923911 LanC lantibiotic synthetase component C-like 2 [Homo
sapiens]
Length = 450
Score = 184 bits (466), Expect = 2e-46
Identities = 134/392 (34%), Positives = 194/392 (49%), Gaps = 48/392 (12%)
Query: 4 KRCFANRFDDYQ---GSLLA-GQCEEA--VAPLVTAT----------------IERILQE 41
+R F N F DY+ G+LLA G EE V P T I RI +
Sbjct: 21 ERAFVNPFPDYEAAAGALLASGAAEETGCVRPPATTDEPGLPFHQDGKIIHNFIRRIQTK 80
Query: 42 LPPLGGGAEARGATAGASACQGGLYGGVAGVAYM---LYHVSQSPLFATARERYLRSAKR 98
+ L E TA C Y G G+A + LY V+ + Y++ R
Sbjct: 81 IKDLLQQMEEGLKTADPHDCSA--YTGWTGIALLYLQLYRVTCDQTYLLRSLDYVKRTLR 138
Query: 99 LIDACARAEEWGEPDADTRAAFLLGGAGVYAVATLVYHALGRSDYVQPLGKFRALCAVCA 158
++ R FL G AG AV ++YH L RSD + L +
Sbjct: 139 NLNG-------------RRVTFLCGDAGPLAVGAVIYHKL-RSDCESQECVTKLLQLQRS 184
Query: 159 PVSFLECGSDELFVGRAGYLCAALVLKQKLAQEVLTPAQIKSICQAILDSGKQYAIKKRK 218
V DEL GRAGYL A L L ++ + + IK + AI++SGK + ++RK
Sbjct: 185 VVCQESDLPDELLYGRAGYLYALLYLNTEIGPGTVCESAIKEVVNAIIESGKTLSREERK 244
Query: 219 P--FPLMYSYYGTEYLGAAHGLSSILQMLLSYHEHLKPSD-RELVWQSVDFLMEQE-QNC 274
PL+Y ++ +Y+GAAHG++ I ML+ + E+V S+D++ ++ ++
Sbjct: 245 TERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYVRHKKFRSG 304
Query: 275 NWPPELGETIERENELVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLK 334
N+P L +R LVHWCHGAPG+ ++ +AY V K+ +YL + C ++ WQ+GLL+
Sbjct: 305 NYPSSLSNETDR---LVHWCHGAPGVIHMLMQAYKVFKEEKYLKEAMECSDVIWQRGLLR 361
Query: 335 KGPGICHGVAGSAYVFLLLYRLTGNSKYIYRA 366
KG GICHG AG+ Y FL LYRLT + KY+YRA
Sbjct: 362 KGYGICHGTAGNGYSFLSLYRLTQDKKYLYRA 393
>gi|5174445 lanthionine synthetase C-like protein 1 [Homo sapiens]
Length = 399
Score = 177 bits (449), Expect = 1e-44
Identities = 120/376 (31%), Positives = 180/376 (47%), Gaps = 43/376 (11%)
Query: 4 KRCFANRFDDYQGSLLAGQCEEA------VAPLVTATIERILQELPPLGGGAEARGATAG 57
+R F N + DY SL G + A + +T I +LQ++ A+ R T
Sbjct: 3 QRAFPNPYADYNKSLAEGYFDAAGRLTPEFSQRLTNKIRELLQQMERGLKSADPRDGTG- 61
Query: 58 ASACQGGLYGGVAGVAYM---LYHVSQSPLFATARERYLRSAKRLIDACARAEEWGEPDA 114
Y G AG+A + LY V P + Y++ + +
Sbjct: 62 --------YTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCL-------------T 100
Query: 115 DTRAAFLLGGAGVYAVATLVYHALGRSDYVQPLGKFRALCAVCAPVSFLECGSDELFVGR 174
FL G AG AVA ++YH + + + + +E+ GR
Sbjct: 101 KRSITFLCGDAGPLAVAAVLYHKMNNEKQAED-----CITRLIHLNKIDPHAPNEMLYGR 155
Query: 175 AGYLCAALVLKQKLAQEVLTPAQIKSICQAILDSGKQYAIKKR--KPFPLMYSYYGTEYL 232
GY+ A L + + E + + I+ IC+ IL SG+ A K+ PLMY +Y Y+
Sbjct: 156 IGYIYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYV 215
Query: 233 GAAHGLSSILQMLLSYHEHLKPSD-RELVWQSVDFLMEQE-QNCNWPPELGETIERENEL 290
GAAHGL+ I L+ + LV SVD++ + + + N+PP +G+ + L
Sbjct: 216 GAAHGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDN---RDLL 272
Query: 291 VHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYVF 350
VHWCHGAPG+ Y+ +AY V ++ +YL +C ++ WQ GLLKKG G+CHG AG+AY F
Sbjct: 273 VHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAF 332
Query: 351 LLLYRLTGNSKYIYRA 366
L LY LT + KY+YRA
Sbjct: 333 LTLYNLTQDMKYLYRA 348
>gi|212274477 lanthionine synthetase C-like protein 1 [Homo sapiens]
Length = 399
Score = 177 bits (449), Expect = 1e-44
Identities = 120/376 (31%), Positives = 180/376 (47%), Gaps = 43/376 (11%)
Query: 4 KRCFANRFDDYQGSLLAGQCEEA------VAPLVTATIERILQELPPLGGGAEARGATAG 57
+R F N + DY SL G + A + +T I +LQ++ A+ R T
Sbjct: 3 QRAFPNPYADYNKSLAEGYFDAAGRLTPEFSQRLTNKIRELLQQMERGLKSADPRDGTG- 61
Query: 58 ASACQGGLYGGVAGVAYM---LYHVSQSPLFATARERYLRSAKRLIDACARAEEWGEPDA 114
Y G AG+A + LY V P + Y++ + +
Sbjct: 62 --------YTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCL-------------T 100
Query: 115 DTRAAFLLGGAGVYAVATLVYHALGRSDYVQPLGKFRALCAVCAPVSFLECGSDELFVGR 174
FL G AG AVA ++YH + + + + +E+ GR
Sbjct: 101 KRSITFLCGDAGPLAVAAVLYHKMNNEKQAED-----CITRLIHLNKIDPHAPNEMLYGR 155
Query: 175 AGYLCAALVLKQKLAQEVLTPAQIKSICQAILDSGKQYAIKKR--KPFPLMYSYYGTEYL 232
GY+ A L + + E + + I+ IC+ IL SG+ A K+ PLMY +Y Y+
Sbjct: 156 IGYIYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYV 215
Query: 233 GAAHGLSSILQMLLSYHEHLKPSD-RELVWQSVDFLMEQE-QNCNWPPELGETIERENEL 290
GAAHGL+ I L+ + LV SVD++ + + + N+PP +G+ + L
Sbjct: 216 GAAHGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDN---RDLL 272
Query: 291 VHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYVF 350
VHWCHGAPG+ Y+ +AY V ++ +YL +C ++ WQ GLLKKG G+CHG AG+AY F
Sbjct: 273 VHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAF 332
Query: 351 LLLYRLTGNSKYIYRA 366
L LY LT + KY+YRA
Sbjct: 333 LTLYNLTQDMKYLYRA 348
>gi|212274337 lanthionine synthetase C-like protein 1 [Homo sapiens]
Length = 399
Score = 177 bits (449), Expect = 1e-44
Identities = 120/376 (31%), Positives = 180/376 (47%), Gaps = 43/376 (11%)
Query: 4 KRCFANRFDDYQGSLLAGQCEEA------VAPLVTATIERILQELPPLGGGAEARGATAG 57
+R F N + DY SL G + A + +T I +LQ++ A+ R T
Sbjct: 3 QRAFPNPYADYNKSLAEGYFDAAGRLTPEFSQRLTNKIRELLQQMERGLKSADPRDGTG- 61
Query: 58 ASACQGGLYGGVAGVAYM---LYHVSQSPLFATARERYLRSAKRLIDACARAEEWGEPDA 114
Y G AG+A + LY V P + Y++ + +
Sbjct: 62 --------YTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCL-------------T 100
Query: 115 DTRAAFLLGGAGVYAVATLVYHALGRSDYVQPLGKFRALCAVCAPVSFLECGSDELFVGR 174
FL G AG AVA ++YH + + + + +E+ GR
Sbjct: 101 KRSITFLCGDAGPLAVAAVLYHKMNNEKQAED-----CITRLIHLNKIDPHAPNEMLYGR 155
Query: 175 AGYLCAALVLKQKLAQEVLTPAQIKSICQAILDSGKQYAIKKR--KPFPLMYSYYGTEYL 232
GY+ A L + + E + + I+ IC+ IL SG+ A K+ PLMY +Y Y+
Sbjct: 156 IGYIYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYV 215
Query: 233 GAAHGLSSILQMLLSYHEHLKPSD-RELVWQSVDFLMEQE-QNCNWPPELGETIERENEL 290
GAAHGL+ I L+ + LV SVD++ + + + N+PP +G+ + L
Sbjct: 216 GAAHGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDN---RDLL 272
Query: 291 VHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYVF 350
VHWCHGAPG+ Y+ +AY V ++ +YL +C ++ WQ GLLKKG G+CHG AG+AY F
Sbjct: 273 VHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAF 332
Query: 351 LLLYRLTGNSKYIYRA 366
L LY LT + KY+YRA
Sbjct: 333 LTLYNLTQDMKYLYRA 348
>gi|110224458 solute carrier family 12, member 6 isoform e [Homo
sapiens]
Length = 1135
Score = 30.0 bits (66), Expect = 3.7
Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 9/119 (7%)
Query: 47 GGAEARGATAGASACQGGLYGGVAGVAYMLYHVSQSPLFATARERYLRSAKR--LIDACA 104
G A G+ S G +GG G+ + L FA A Y+ A L+
Sbjct: 230 GVVPAGGSYFMISRALGPEFGGAVGLCFYL-----GTTFAAAM--YILGAIEIFLVYIVP 282
Query: 105 RAEEWGEPDADTRAAFLLGGAGVYAVATLVYHALGRSDYVQPLGKFRALCAVCAPVSFL 163
RA + DA +A +L VY A LV L V+ + KF +L C VS L
Sbjct: 283 RAAIFHSDDALKESAAMLNNMRVYGTAFLVLMVLVVFIGVRYVNKFASLFLACVIVSIL 341
>gi|110224456 solute carrier family 12, member 6 isoform d [Homo
sapiens]
Length = 1141
Score = 30.0 bits (66), Expect = 3.7
Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 9/119 (7%)
Query: 47 GGAEARGATAGASACQGGLYGGVAGVAYMLYHVSQSPLFATARERYLRSAKR--LIDACA 104
G A G+ S G +GG G+ + L FA A Y+ A L+
Sbjct: 236 GVVPAGGSYFMISRALGPEFGGAVGLCFYL-----GTTFAAAM--YILGAIEIFLVYIVP 288
Query: 105 RAEEWGEPDADTRAAFLLGGAGVYAVATLVYHALGRSDYVQPLGKFRALCAVCAPVSFL 163
RA + DA +A +L VY A LV L V+ + KF +L C VS L
Sbjct: 289 RAAIFHSDDALKESAAMLNNMRVYGTAFLVLMVLVVFIGVRYVNKFASLFLACVIVSIL 347
>gi|110224454 solute carrier family 12, member 6 isoform c [Homo
sapiens]
Length = 1091
Score = 30.0 bits (66), Expect = 3.7
Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 9/119 (7%)
Query: 47 GGAEARGATAGASACQGGLYGGVAGVAYMLYHVSQSPLFATARERYLRSAKR--LIDACA 104
G A G+ S G +GG G+ + L FA A Y+ A L+
Sbjct: 186 GVVPAGGSYFMISRALGPEFGGAVGLCFYL-----GTTFAAAM--YILGAIEIFLVYIVP 238
Query: 105 RAEEWGEPDADTRAAFLLGGAGVYAVATLVYHALGRSDYVQPLGKFRALCAVCAPVSFL 163
RA + DA +A +L VY A LV L V+ + KF +L C VS L
Sbjct: 239 RAAIFHSDDALKESAAMLNNMRVYGTAFLVLMVLVVFIGVRYVNKFASLFLACVIVSIL 297
>gi|110224452 solute carrier family 12, member 6 isoform c [Homo
sapiens]
Length = 1091
Score = 30.0 bits (66), Expect = 3.7
Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 9/119 (7%)
Query: 47 GGAEARGATAGASACQGGLYGGVAGVAYMLYHVSQSPLFATARERYLRSAKR--LIDACA 104
G A G+ S G +GG G+ + L FA A Y+ A L+
Sbjct: 186 GVVPAGGSYFMISRALGPEFGGAVGLCFYL-----GTTFAAAM--YILGAIEIFLVYIVP 238
Query: 105 RAEEWGEPDADTRAAFLLGGAGVYAVATLVYHALGRSDYVQPLGKFRALCAVCAPVSFL 163
RA + DA +A +L VY A LV L V+ + KF +L C VS L
Sbjct: 239 RAAIFHSDDALKESAAMLNNMRVYGTAFLVLMVLVVFIGVRYVNKFASLFLACVIVSIL 297
>gi|4826780 solute carrier family 12, member 6 isoform b [Homo
sapiens]
Length = 1099
Score = 30.0 bits (66), Expect = 3.7
Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 9/119 (7%)
Query: 47 GGAEARGATAGASACQGGLYGGVAGVAYMLYHVSQSPLFATARERYLRSAKR--LIDACA 104
G A G+ S G +GG G+ + L FA A Y+ A L+
Sbjct: 194 GVVPAGGSYFMISRALGPEFGGAVGLCFYL-----GTTFAAAM--YILGAIEIFLVYIVP 246
Query: 105 RAEEWGEPDADTRAAFLLGGAGVYAVATLVYHALGRSDYVQPLGKFRALCAVCAPVSFL 163
RA + DA +A +L VY A LV L V+ + KF +L C VS L
Sbjct: 247 RAAIFHSDDALKESAAMLNNMRVYGTAFLVLMVLVVFIGVRYVNKFASLFLACVIVSIL 305
>gi|110224449 solute carrier family 12, member 6 isoform a [Homo
sapiens]
Length = 1150
Score = 30.0 bits (66), Expect = 3.7
Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 9/119 (7%)
Query: 47 GGAEARGATAGASACQGGLYGGVAGVAYMLYHVSQSPLFATARERYLRSAKR--LIDACA 104
G A G+ S G +GG G+ + L FA A Y+ A L+
Sbjct: 245 GVVPAGGSYFMISRALGPEFGGAVGLCFYL-----GTTFAAAM--YILGAIEIFLVYIVP 297
Query: 105 RAEEWGEPDADTRAAFLLGGAGVYAVATLVYHALGRSDYVQPLGKFRALCAVCAPVSFL 163
RA + DA +A +L VY A LV L V+ + KF +L C VS L
Sbjct: 298 RAAIFHSDDALKESAAMLNNMRVYGTAFLVLMVLVVFIGVRYVNKFASLFLACVIVSIL 356
>gi|98986321 gliomedin [Homo sapiens]
Length = 551
Score = 30.0 bits (66), Expect = 3.7
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 51 ARGATAGASACQGGLYGGVAGVAYMLYHVSQSPLFATARERYLRSAKRLIDACARAEEWG 110
ARGA G GL G +A VA + + +FA + R L SA R ++A R E
Sbjct: 2 ARGAEGGRGDAGWGLRGALAAVALLSALNAAGTVFALCQWRGLSSALRALEA-QRGREQR 60
Query: 111 EPDA 114
E A
Sbjct: 61 EDSA 64
>gi|239754797 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 29.6 bits (65), Expect = 4.8
Identities = 27/66 (40%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
Query: 24 EEAVAPLVTATIERILQELPPLGGGAEARGATAGASACQGGLYGGVAGVAYMLYHVSQSP 83
EE AP R L E GG E+R TA A + GLYGG G +HVS P
Sbjct: 93 EEGEAPA------RRLSERRRGGGKEESRPGTAAAPGGRAGLYGGPRGP----HHVS-LP 141
Query: 84 LFATAR 89
TAR
Sbjct: 142 GLPTAR 147
>gi|239743415 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 29.6 bits (65), Expect = 4.8
Identities = 27/66 (40%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
Query: 24 EEAVAPLVTATIERILQELPPLGGGAEARGATAGASACQGGLYGGVAGVAYMLYHVSQSP 83
EE AP R L E GG E+R TA A + GLYGG G +HVS P
Sbjct: 93 EEGEAPA------RRLSERRRGGGKEESRPGTAAAPGGRAGLYGGPRGP----HHVS-LP 141
Query: 84 LFATAR 89
TAR
Sbjct: 142 GLPTAR 147
>gi|224548927 G-protein signaling modulator 1 (AGS3-like, C.
elegans) isoform a [Homo sapiens]
Length = 675
Score = 29.3 bits (64), Expect = 6.3
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
Query: 57 GASACQGGLYGGVAGVAYMLYHVSQSPLFATARERYLRSAKRLIDACARAEEWGEPDADT 116
G A QG YG + Y+L + +++ F R A A+E+G+ A+
Sbjct: 203 GDRAAQGRAYGNLGNTHYLLGNFTEATTFHKER-------------LAIAKEFGDKAAER 249
Query: 117 RAAFLLGGAGVY 128
RA LG A V+
Sbjct: 250 RAYSNLGNAHVF 261
>gi|224548925 G-protein signaling modulator 1 (AGS3-like, C.
elegans) isoform b [Homo sapiens]
Length = 457
Score = 29.3 bits (64), Expect = 6.3
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
Query: 57 GASACQGGLYGGVAGVAYMLYHVSQSPLFATARERYLRSAKRLIDACARAEEWGEPDADT 116
G A QG YG + Y+L + +++ F R A A+E+G+ A+
Sbjct: 203 GDRAAQGRAYGNLGNTHYLLGNFTEATTFHKER-------------LAIAKEFGDKAAER 249
Query: 117 RAAFLLGGAGVY 128
RA LG A V+
Sbjct: 250 RAYSNLGNAHVF 261
>gi|19924161 RPB5-mediating protein isoform b [Homo sapiens]
Length = 495
Score = 29.3 bits (64), Expect = 6.3
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 2 DTKRCFANRFDDYQGSLLAGQCEEAVAPLVTATIERILQELP 43
DT A FDD +G L + CEEA + T E IL+E P
Sbjct: 382 DTSESSAAEFDDRRGVLRSISCEEATC---SDTSESILEEEP 420
>gi|19924159 RPB5-mediating protein isoform a [Homo sapiens]
Length = 535
Score = 29.3 bits (64), Expect = 6.3
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 2 DTKRCFANRFDDYQGSLLAGQCEEAVAPLVTATIERILQELP 43
DT A FDD +G L + CEEA + T E IL+E P
Sbjct: 422 DTSESSAAEFDDRRGVLRSISCEEATC---SDTSESILEEEP 460
>gi|110347429 mediator complex subunit 12 [Homo sapiens]
Length = 2177
Score = 28.9 bits (63), Expect = 8.3
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 221 PLMYSYYGTEYLGAAHGLSSILQMLLSYHEHLKPSDRELVWQSVDFLMEQEQ 272
PL + ++GT + Q LL YH HL+P R + + E E+
Sbjct: 1699 PLSWGWFGTVRVDRRVARGEEQQRLLLYHTHLRPRPRAYYLEPLPLPPEDEE 1750
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,346,820
Number of Sequences: 37866
Number of extensions: 686687
Number of successful extensions: 1821
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1789
Number of HSP's gapped (non-prelim): 23
length of query: 388
length of database: 18,247,518
effective HSP length: 104
effective length of query: 284
effective length of database: 14,309,454
effective search space: 4063884936
effective search space used: 4063884936
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.