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Search of human proteins with 34147487
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|34147487 protein O-fucosyltransferase 2 isoform C [Homo
sapiens]
(429 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34147487 protein O-fucosyltransferase 2 isoform C [Homo sapiens] 895 0.0
gi|13273311 protein O-fucosyltransferase 2 isoform A [Homo sapiens] 789 0.0
gi|27436889 protein O-fucosyltransferase 1 isoform 1 precursor [... 37 0.045
gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens] 33 0.38
gi|19743815 integrin beta 1 isoform 1B precursor [Homo sapiens] 33 0.38
gi|19743813 integrin beta 1 isoform 1A precursor [Homo sapiens] 33 0.38
gi|19743823 integrin beta 1 isoform 1A precursor [Homo sapiens] 33 0.38
gi|19743821 integrin beta 1 isoform 1C-2 precursor [Homo sapiens] 33 0.38
gi|19743819 integrin beta 1 isoform 1D precursor [Homo sapiens] 33 0.38
gi|237681069 spatacsin isoform 2 [Homo sapiens] 32 1.4
gi|93204888 spatacsin isoform 1 [Homo sapiens] 32 1.4
gi|221316699 maltase-glucoamylase [Homo sapiens] 29 7.2
gi|169209609 PREDICTED: hypothetical protein [Homo sapiens] 29 7.2
gi|169210596 PREDICTED: hypothetical protein [Homo sapiens] 29 7.2
gi|169210141 PREDICTED: hypothetical protein [Homo sapiens] 29 7.2
gi|29029601 DEAH (Asp-Glu-Ala-His) box polypeptide 37 [Homo sapi... 29 7.2
gi|110624785 NACHT, leucine rich repeat and PYD containing 13 [H... 29 9.4
gi|7661844 coiled-coil domain containing 22 [Homo sapiens] 29 9.4
>gi|34147487 protein O-fucosyltransferase 2 isoform C [Homo sapiens]
Length = 429
Score = 895 bits (2314), Expect = 0.0
Identities = 429/429 (100%), Positives = 429/429 (100%)
Query: 1 MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR 60
MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
Sbjct: 1 MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR 60
Query: 61 DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI 120
DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
Sbjct: 61 DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI 120
Query: 121 EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFW 180
EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFW
Sbjct: 121 EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFW 180
Query: 181 GYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSM 240
GYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSM
Sbjct: 181 GYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSM 240
Query: 241 VFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIW 300
VFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIW
Sbjct: 241 VFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIW 300
Query: 301 GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELE 360
GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELE
Sbjct: 301 GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELE 360
Query: 361 LYKDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKTTYNRFCGDQEKACE 420
LYKDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKTTYNRFCGDQEKACE
Sbjct: 361 LYKDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKTTYNRFCGDQEKACE 420
Query: 421 QPTHWKITY 429
QPTHWKITY
Sbjct: 421 QPTHWKITY 429
>gi|13273311 protein O-fucosyltransferase 2 isoform A [Homo sapiens]
Length = 424
Score = 789 bits (2037), Expect = 0.0
Identities = 383/390 (98%), Positives = 385/390 (98%), Gaps = 1/390 (0%)
Query: 1 MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR 60
MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
Sbjct: 1 MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR 60
Query: 61 DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI 120
DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
Sbjct: 61 DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI 120
Query: 121 EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFW 180
EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFW
Sbjct: 121 EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFW 180
Query: 181 GYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSM 240
GYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSM
Sbjct: 181 GYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSM 240
Query: 241 VFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIW 300
VFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIW
Sbjct: 241 VFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIW 300
Query: 301 GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELE 360
GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELE
Sbjct: 301 GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELE 360
Query: 361 LYKDGGVAIIDQWICAHARFFIGTSVSTFS 390
LYKDGGVAIIDQWICAHAR + TS+S S
Sbjct: 361 LYKDGGVAIIDQWICAHAR-CLPTSLSAES 389
>gi|27436889 protein O-fucosyltransferase 1 isoform 1 precursor
[Homo sapiens]
Length = 388
Score = 36.6 bits (83), Expect = 0.045
Identities = 85/379 (22%), Positives = 141/379 (37%), Gaps = 64/379 (16%)
Query: 45 YLLYDVNPPEG-FNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIP 103
YLLY P G F + D ++ + K L +T L +PPW H P + +
Sbjct: 34 YLLYC--PCMGRFGNQADHFLGSLAFAKLLNRT----LAVPPWIEYQH-HKPPFTNLHVS 86
Query: 104 WSEFFDLPSLNKNIPVIEYEQF---IAESGGPFIDQV-YVLQSYAE---GWKEGTWEEKV 156
+ ++F L L VI E F +A + P +V Y + A+ K +E
Sbjct: 87 YQKYFKLEPLQAYHRVISLEDFMEKLAPTHWPPEKRVAYCFEVAAQRSPDKKTCPMKEGN 146
Query: 157 DERPCIDQLLYSQDKHEYYRGWFWG--YEETRGLNVSCLSVQGSASIVAPLLLRNTSARS 214
P DQ S +K E + G + Y E S + S L L A+
Sbjct: 147 PFGPFWDQFHVSFNKSELFTGISFSASYREQ-------WSQRFSPKEHPVLALPGAPAQF 199
Query: 215 VMLDRAENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRSRHLNSTDDADRIPFQEDWM 274
+L+ E+ ++ MV++ + + G+ HL + DW
Sbjct: 200 PVLE-------------EHRPLQKYMVWSDEMVKTGEAQIHAHLVRPYVGIHLRIGSDWK 246
Query: 275 KMKVKLGSALGGPYLGVHLRRKDFIWGHRQD----------VPSLEGAVRKIRSLMKTHR 324
L G H G+ + +P L+ R ++ +++
Sbjct: 247 NACAMLKDGTAGS----HFMASPQCVGYSRSTAAPLTMTMCLPDLKEIQRAVKLWVRSLD 302
Query: 325 LDKVFVATDAVR--KEYEELKKLLPEMVRFEPTWEELELYKDGGVAIIDQWICAHARFFI 382
V+VATD+ E ++L K ++V +P VA +D +I A FI
Sbjct: 303 AQSVYVATDSESYVPELQQLFKGKVKVVSLKPE-----------VAQVDLYILGQADHFI 351
Query: 383 GTSVSTFSFRIHEEREILG 401
G VS+F+ + ER++ G
Sbjct: 352 GNCVSSFTAFVKRERDLQG 370
>gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens]
Length = 825
Score = 33.5 bits (75), Expect = 0.38
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 292 HLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPE 348
HL + H D PS+ V+K+ + + +F T+ + Y+ELK L+P+
Sbjct: 302 HLENNMYTMSHYYDYPSIAHLVQKLSE----NNIQTIFAVTEEFQPVYKELKNLIPK 354
>gi|19743815 integrin beta 1 isoform 1B precursor [Homo sapiens]
Length = 789
Score = 33.5 bits (75), Expect = 0.38
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 292 HLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPE 348
HL + H D PS+ V+K+ + + +F T+ + Y+ELK L+P+
Sbjct: 302 HLENNMYTMSHYYDYPSIAHLVQKLSE----NNIQTIFAVTEEFQPVYKELKNLIPK 354
>gi|19743813 integrin beta 1 isoform 1A precursor [Homo sapiens]
Length = 798
Score = 33.5 bits (75), Expect = 0.38
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 292 HLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPE 348
HL + H D PS+ V+K+ + + +F T+ + Y+ELK L+P+
Sbjct: 302 HLENNMYTMSHYYDYPSIAHLVQKLSE----NNIQTIFAVTEEFQPVYKELKNLIPK 354
>gi|19743823 integrin beta 1 isoform 1A precursor [Homo sapiens]
Length = 798
Score = 33.5 bits (75), Expect = 0.38
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 292 HLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPE 348
HL + H D PS+ V+K+ + + +F T+ + Y+ELK L+P+
Sbjct: 302 HLENNMYTMSHYYDYPSIAHLVQKLSE----NNIQTIFAVTEEFQPVYKELKNLIPK 354
>gi|19743821 integrin beta 1 isoform 1C-2 precursor [Homo sapiens]
Length = 819
Score = 33.5 bits (75), Expect = 0.38
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 292 HLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPE 348
HL + H D PS+ V+K+ + + +F T+ + Y+ELK L+P+
Sbjct: 302 HLENNMYTMSHYYDYPSIAHLVQKLSE----NNIQTIFAVTEEFQPVYKELKNLIPK 354
>gi|19743819 integrin beta 1 isoform 1D precursor [Homo sapiens]
Length = 801
Score = 33.5 bits (75), Expect = 0.38
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 292 HLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPE 348
HL + H D PS+ V+K+ + + +F T+ + Y+ELK L+P+
Sbjct: 302 HLENNMYTMSHYYDYPSIAHLVQKLSE----NNIQTIFAVTEEFQPVYKELKNLIPK 354
>gi|237681069 spatacsin isoform 2 [Homo sapiens]
Length = 2330
Score = 31.6 bits (70), Expect = 1.4
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 16/118 (13%)
Query: 308 SLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELELYKDGGV 367
S+E + RS+++ + D F A+ + EL +L + + + +E++ K
Sbjct: 1665 SIENLQHECRSILERLQTDGQF----ALARRVAELAELPVDNLVIKEITQEMQTLKH--- 1717
Query: 368 AIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKTTYNRFCGDQEKACEQPTHW 425
I+QW AR F + HE + + K + F ACE PT W
Sbjct: 1718 --IEQWSLKQARI-------DFWKKCHENFKKNSISSKAASSFFSTQAHVACEHPTGW 1766
>gi|93204888 spatacsin isoform 1 [Homo sapiens]
Length = 2443
Score = 31.6 bits (70), Expect = 1.4
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 16/118 (13%)
Query: 308 SLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELELYKDGGV 367
S+E + RS+++ + D F A+ + EL +L + + + +E++ K
Sbjct: 1665 SIENLQHECRSILERLQTDGQF----ALARRVAELAELPVDNLVIKEITQEMQTLKH--- 1717
Query: 368 AIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKTTYNRFCGDQEKACEQPTHW 425
I+QW AR F + HE + + K + F ACE PT W
Sbjct: 1718 --IEQWSLKQARI-------DFWKKCHENFKKNSISSKAASSFFSTQAHVACEHPTGW 1766
>gi|221316699 maltase-glucoamylase [Homo sapiens]
Length = 1857
Score = 29.3 bits (64), Expect = 7.2
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 220 AENLLHDHYGGKEYWDTRRSMVFARHL--REVGDEFRSRHLNSTDDADRIPF----QEDW 273
A LLH+ Y WD + ++ L V DE + + DA + Q W
Sbjct: 738 ARPLLHEFYEDNSTWDVHQQFLWGPGLLITPVLDEGAEKVMAYVPDAVWYDYETGSQVRW 797
Query: 274 MKMKVKLGSALGGPYLGVHLR 294
K KV++ L G +G+HLR
Sbjct: 798 RKQKVEM--ELPGDKIGLHLR 816
>gi|169209609 PREDICTED: hypothetical protein [Homo sapiens]
Length = 112
Score = 29.3 bits (64), Expect = 7.2
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 325 LDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELELYKDG 365
L K+ AT AV + EEL E RF TW +L+K+G
Sbjct: 66 LTKLLEATSAVSAQVEELAFKCTEKARFLKTWR--DLWKEG 104
>gi|169210596 PREDICTED: hypothetical protein [Homo sapiens]
Length = 112
Score = 29.3 bits (64), Expect = 7.2
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 325 LDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELELYKDG 365
L K+ AT AV + EEL E RF TW +L+K+G
Sbjct: 66 LTKLLEATSAVSAQVEELAFKCTEKARFLKTWR--DLWKEG 104
>gi|169210141 PREDICTED: hypothetical protein [Homo sapiens]
Length = 112
Score = 29.3 bits (64), Expect = 7.2
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 325 LDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELELYKDG 365
L K+ AT AV + EEL E RF TW +L+K+G
Sbjct: 66 LTKLLEATSAVSAQVEELAFKCTEKARFLKTWR--DLWKEG 104
>gi|29029601 DEAH (Asp-Glu-Ala-His) box polypeptide 37 [Homo sapiens]
Length = 1157
Score = 29.3 bits (64), Expect = 7.2
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 16/89 (17%)
Query: 289 LGVHLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRLDK-VFVATDAVRKEYEELKKLLP 347
LG HL R+ V S E K R+ KT LD VF+ +V L K LP
Sbjct: 933 LGDHLARR---------VQSEEMLEDKWRNAYKTPLLDDPVFIHPSSV------LFKELP 977
Query: 348 EMVRFEPTWEELELYKDGGVAIIDQWICA 376
E V ++ E ++Y G ++ QWI A
Sbjct: 978 EFVVYQEIVETTKMYMKGVSSVEVQWIPA 1006
>gi|110624785 NACHT, leucine rich repeat and PYD containing 13 [Homo
sapiens]
Length = 1043
Score = 28.9 bits (63), Expect = 9.4
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 77 EEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVIEY 122
EE+ L L P + W +P H RIPW+ LN + + E+
Sbjct: 30 EEFKLCLEPQQLMDFWSAPQGHFPRIPWANLRAADPLNLSFLLDEH 75
>gi|7661844 coiled-coil domain containing 22 [Homo sapiens]
Length = 627
Score = 28.9 bits (63), Expect = 9.4
Identities = 44/185 (23%), Positives = 77/185 (41%), Gaps = 34/185 (18%)
Query: 197 GSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSMVFA--RHLREVGDEFR 254
G+A++ L+ SA+ V+ H G+ W+ R + A RHLR++ D
Sbjct: 396 GTANLAKLQLVVENSAQRVI----------HLAGQ--WEKHRVPLLAEYRHLRKLQD--- 440
Query: 255 SRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDVPSLEGAVR 314
R L S+ I QE ++ A RRK+ ++ +Q + LE R
Sbjct: 441 CRELESSRRLAEI--QELHQSVRAAAEEA----------RRKEEVY--KQLMSELETLPR 486
Query: 315 KIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELELYKDGGVAIIDQWI 374
+ L T R+ ++ +RK+ EE+ K+L + + L D A+ D+ +
Sbjct: 487 DVSRLAYTQRILEI---VGNIRKQKEEITKILSDTKELQKEINSLSGKLDRTFAVTDELV 543
Query: 375 CAHAR 379
A+
Sbjct: 544 FKDAK 548
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.138 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,323,224
Number of Sequences: 37866
Number of extensions: 778596
Number of successful extensions: 1631
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1619
Number of HSP's gapped (non-prelim): 20
length of query: 429
length of database: 18,247,518
effective HSP length: 105
effective length of query: 324
effective length of database: 14,271,588
effective search space: 4623994512
effective search space used: 4623994512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.