Search of human proteins with 33300639

Search of human proteins with 33300639

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|33300639 rhomboid domain containing 1 [Homo sapiens]
         (315 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|33300639 rhomboid domain containing 1 [Homo sapiens]               661   0.0  
gi|94818790 rhomboid domain containing 2 isoform a [Homo sapiens]      37   0.017
gi|23238208 interleukin 17A receptor precursor [Homo sapiens]          29   6.2  
gi|112734870 hypothetical protein LOC57648 [Homo sapiens]              29   6.2  
gi|31881792 leukotriene B4 receptor [Homo sapiens]                     28   8.1  
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa...    28   8.1  
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap...    28   8.1  
gi|221218998 leukotriene B4 receptor [Homo sapiens]                    28   8.1  
gi|47458825 hypothetical protein LOC144577 [Homo sapiens]              28   8.1  
gi|20162566 chromosome 7 open reading frame 11 [Homo sapiens]          28   8.1  

>gi|33300639 rhomboid domain containing 1 [Homo sapiens]
          Length = 315

 Score =  661 bits (1705), Expect = 0.0
 Identities = 315/315 (100%), Positives = 315/315 (100%)

Query: 1   MQRRSRGINTGLILLLSQIFHVGINNIPPVTLATLALNIWFFLNPQKPLYSSCLSVEKCY 60
           MQRRSRGINTGLILLLSQIFHVGINNIPPVTLATLALNIWFFLNPQKPLYSSCLSVEKCY
Sbjct: 1   MQRRSRGINTGLILLLSQIFHVGINNIPPVTLATLALNIWFFLNPQKPLYSSCLSVEKCY 60

Query: 61  QQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLERRLGSRWFAYVITAFSVLTGVVYL 120
           QQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLERRLGSRWFAYVITAFSVLTGVVYL
Sbjct: 61  QQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLERRLGSRWFAYVITAFSVLTGVVYL 120

Query: 121 LLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVEL 180
           LLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVEL
Sbjct: 121 LLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVEL 180

Query: 181 VAIHLFSPGTSFAGHLAGILVGLMYTQGPLKKIMEACAGGFSSSVGYPGRQYYFNSSGSS 240
           VAIHLFSPGTSFAGHLAGILVGLMYTQGPLKKIMEACAGGFSSSVGYPGRQYYFNSSGSS
Sbjct: 181 VAIHLFSPGTSFAGHLAGILVGLMYTQGPLKKIMEACAGGFSSSVGYPGRQYYFNSSGSS 240

Query: 241 GYQDYYPHGRPDHYEEAPRNYDTYTAGLSEEEQLERALQASLWDRGNTRNSPPPYGFHLS 300
           GYQDYYPHGRPDHYEEAPRNYDTYTAGLSEEEQLERALQASLWDRGNTRNSPPPYGFHLS
Sbjct: 241 GYQDYYPHGRPDHYEEAPRNYDTYTAGLSEEEQLERALQASLWDRGNTRNSPPPYGFHLS 300

Query: 301 PEEMRRQRLHRFDSQ 315
           PEEMRRQRLHRFDSQ
Sbjct: 301 PEEMRRQRLHRFDSQ 315


>gi|94818790 rhomboid domain containing 2 isoform a [Homo sapiens]
          Length = 364

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 9/163 (5%)

Query: 46  QKPLYSSCLSVEKCYQQKDWQ--RLLLSPLHHADDWHLYFNMASMLWKGI-NLERRLGSR 102
           Q+PL  S L++ K    ++WQ  RL+     + +   L    A ++W+   N ER +G+ 
Sbjct: 40  QQPLAPSGLTL-KSEALRNWQVYRLVTYIFVYENPISLLCG-AIIIWRFAGNFERTVGTV 97

Query: 103 WFAYVITAFSVLTGVVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGF 162
              +    F++ + +++L  + AV+      + +   A GF+ V FA+  +         
Sbjct: 98  RHCFFTVIFAIFSAIIFLSFE-AVSSLSKLGEVED--ARGFTPVAFAMLGVTTVRSRMRR 154

Query: 163 VNILGFPVPNRFACWVELVAIHLFSPGTSFAGHLAGILVGLMY 205
             + G  VP+    W+ L A  L  P TSF  ++ G+ +GL Y
Sbjct: 155 ALVFGMVVPSVLVPWLLLGASWLI-PQTSFLSNVCGLSIGLAY 196


>gi|23238208 interleukin 17A receptor precursor [Homo sapiens]
          Length = 866

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 124 FAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRF-ACWVELVA 182
           F  A  M  PDFKR    G   V +  +V  +   P  F     +P+ +RF   +  +  
Sbjct: 479 FTAAMNMILPDFKRPACFGTYVVCYFSEVSCDGDVPDLFGAAPRYPLMDRFEEVYFRIQD 538

Query: 183 IHLFSPGTSFAGHLAGILVGLMYTQGPLKKIMEACAGGF 221
           + +F PG     H  G L G  Y + P  + + A    F
Sbjct: 539 LEMFQPGRM---HRVGELSGDNYLRSPGGRQLRAALDRF 574


>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
          Length = 1094

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 245 YYPHGRPDHYEEAPRNYDTYTAGLSEEEQLERALQASLWDRGNTRN 290
           ++P GRP H EE           L  +E  ++ L    WD G+T++
Sbjct: 109 FFPSGRPPHLEELHTQAQEGLRSLQHQE--KQKLNKGGWDHGDTQS 152


>gi|31881792 leukotriene B4 receptor [Homo sapiens]
          Length = 352

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 16/69 (23%)

Query: 175 ACWVELVAIHLFSPGTSFAGHLAG-------------ILVGLMYTQGPLKKIMEACAGG- 220
           A W+    ++L   G + AG  AG             +L+ L +    +  ++ ACAGG 
Sbjct: 232 AFWLPYHVVNLAEAGRALAGQAAGLGLVGKRLSLARNVLIALAFLSSSVNPVLYACAGGG 291

Query: 221 --FSSSVGY 227
              S+ VG+
Sbjct: 292 LLRSAGVGF 300


>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
           sapiens]
          Length = 390

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 12/75 (16%)

Query: 228 PGRQYYFNSSGSSGYQDYYP---HGRPDHYEEAPRNYDTYTAGLSEEEQLE---RALQAS 281
           P R Y +   G S  +D YP   +G  D Y    R+Y  + +G S  +  E    +  A 
Sbjct: 237 PPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGR-DRDYSDHPSGGSYRDSYESYGNSRSAP 295

Query: 282 LWDRGNTRNSPPPYG 296
           L     TR  PP YG
Sbjct: 296 L-----TRGPPPSYG 305


>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
           sapiens]
          Length = 390

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 12/75 (16%)

Query: 228 PGRQYYFNSSGSSGYQDYYP---HGRPDHYEEAPRNYDTYTAGLSEEEQLE---RALQAS 281
           P R Y +   G S  +D YP   +G  D Y    R+Y  + +G S  +  E    +  A 
Sbjct: 237 PPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGR-DRDYSDHPSGGSYRDSYESYGNSRSAP 295

Query: 282 LWDRGNTRNSPPPYG 296
           L     TR  PP YG
Sbjct: 296 L-----TRGPPPSYG 305


>gi|221218998 leukotriene B4 receptor [Homo sapiens]
          Length = 352

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 16/69 (23%)

Query: 175 ACWVELVAIHLFSPGTSFAGHLAG-------------ILVGLMYTQGPLKKIMEACAGG- 220
           A W+    ++L   G + AG  AG             +L+ L +    +  ++ ACAGG 
Sbjct: 232 AFWLPYHVVNLAEAGRALAGQAAGLGLVGKRLSLARNVLIALAFLSSSVNPVLYACAGGG 291

Query: 221 --FSSSVGY 227
              S+ VG+
Sbjct: 292 LLRSAGVGF 300


>gi|47458825 hypothetical protein LOC144577 [Homo sapiens]
          Length = 445

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 234 FNSSGSSGYQDYYPHGRPDHYEEAPRNYDTYTAGLS 269
           F++ GS  +Q +  H  P  Y EAP+  D Y A +S
Sbjct: 317 FDNRGSESFQGHGYH-HPHSYREAPKGVDQYPAVVS 351


>gi|20162566 chromosome 7 open reading frame 11 [Homo sapiens]
          Length = 179

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 220 GFSSSVGYPGRQYYFNSSGSSGYQDYYPHGRPDHYEEAPRNYDTYTAGLSEEEQLERALQ 279
           G  S  GYPG  Y  + +GS     Y P  +  H + +PR    + +G   E+++   L+
Sbjct: 79  GSPSPGGYPG-SYSRSPAGSQQQFGYSPGQQQTHPQGSPRTSTPFGSGRVREKRMSNELE 137


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.140    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,762,408
Number of Sequences: 37866
Number of extensions: 648031
Number of successful extensions: 1700
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1695
Number of HSP's gapped (non-prelim): 10
length of query: 315
length of database: 18,247,518
effective HSP length: 102
effective length of query: 213
effective length of database: 14,385,186
effective search space: 3064044618
effective search space used: 3064044618
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.