Search of human proteins with 122939157

Search of human proteins with 122939157

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|122939157 gemin 4 [Homo sapiens]
         (1058 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|122939157 gemin 4 [Homo sapiens]                                  2125   0.0  
gi|58530853 growth hormone releasing hormone receptor isoform b ...    32   2.4  
gi|58530851 growth hormone releasing hormone receptor isoform a ...    32   2.4  
gi|148664188 leucine rich repeat containing 43 isoform 2 [Homo s...    32   3.2  
gi|148664213 leucine rich repeat containing 43 isoform 1 [Homo s...    32   3.2  
gi|38505218 putative acyl-CoA dehydrogenase [Homo sapiens]             31   5.4  
gi|169171357 PREDICTED: similar to hCG1804306 [Homo sapiens]           31   7.1  
gi|169172220 PREDICTED: similar to hCG1804306 [Homo sapiens]           31   7.1  
gi|169170962 PREDICTED: similar to hCG1804306 [Homo sapiens]           31   7.1  
gi|239508768 PREDICTED: similar to hCG1804306 [Homo sapiens]           31   7.1  
gi|48255891 protein kinase C substrate 80K-H isoform 2 [Homo sap...    31   7.1  
gi|48255889 protein kinase C substrate 80K-H isoform 1 [Homo sap...    31   7.1  
gi|150417986 ADP-ribosylation factor guanine nucleotide-exchange...    31   7.1  
gi|211971008 acyl-Coenzyme A dehydrogenase family, member 10 iso...    31   7.1  
gi|48976061 acyl-Coenzyme A dehydrogenase family, member 10 isof...    31   7.1  
gi|211971012 acyl-Coenzyme A dehydrogenase family, member 10 iso...    31   7.1  
gi|148806872 lupus brain antigen 1 [Homo sapiens]                      31   7.1  

>gi|122939157 gemin 4 [Homo sapiens]
          Length = 1058

 Score = 2125 bits (5507), Expect = 0.0
 Identities = 1058/1058 (100%), Positives = 1058/1058 (100%)

Query: 1    MDLGPLNICEEMTILHGGFLLAEQLFHPKALAELTKSDWERVGRPIVEALREISSAAAHS 60
            MDLGPLNICEEMTILHGGFLLAEQLFHPKALAELTKSDWERVGRPIVEALREISSAAAHS
Sbjct: 1    MDLGPLNICEEMTILHGGFLLAEQLFHPKALAELTKSDWERVGRPIVEALREISSAAAHS 60

Query: 61   QPFAWKKKALIIIWAKVLQPHPVTPSDTETRWQEDLFFSVGNMIPTINHTILFELLKSLE 120
            QPFAWKKKALIIIWAKVLQPHPVTPSDTETRWQEDLFFSVGNMIPTINHTILFELLKSLE
Sbjct: 61   QPFAWKKKALIIIWAKVLQPHPVTPSDTETRWQEDLFFSVGNMIPTINHTILFELLKSLE 120

Query: 121  ASGLFIQLLMALPTTICHAELERFLEHVTVDTSAEDVAFFLDVWWEVMKHKGHPQDPLLS 180
            ASGLFIQLLMALPTTICHAELERFLEHVTVDTSAEDVAFFLDVWWEVMKHKGHPQDPLLS
Sbjct: 121  ASGLFIQLLMALPTTICHAELERFLEHVTVDTSAEDVAFFLDVWWEVMKHKGHPQDPLLS 180

Query: 181  QFSAMAHKYLPALDEFPHPPKRLRSDPDACPTMPLLAMLLRGLTQIQSRILGPGRKCCAL 240
            QFSAMAHKYLPALDEFPHPPKRLRSDPDACPTMPLLAMLLRGLTQIQSRILGPGRKCCAL
Sbjct: 181  QFSAMAHKYLPALDEFPHPPKRLRSDPDACPTMPLLAMLLRGLTQIQSRILGPGRKCCAL 240

Query: 241  ANLADMLTVFALTEDDPQEVSATVYLDKLATVISVWNSDTQNPYHQQALAEKVKEAERDV 300
            ANLADMLTVFALTEDDPQEVSATVYLDKLATVISVWNSDTQNPYHQQALAEKVKEAERDV
Sbjct: 241  ANLADMLTVFALTEDDPQEVSATVYLDKLATVISVWNSDTQNPYHQQALAEKVKEAERDV 300

Query: 301  SLTSLAKLPSETIFVGCEFLHHLLREWGEELQAVLRSSQGTSYDSYRLCDSLTSFSQNAT 360
            SLTSLAKLPSETIFVGCEFLHHLLREWGEELQAVLRSSQGTSYDSYRLCDSLTSFSQNAT
Sbjct: 301  SLTSLAKLPSETIFVGCEFLHHLLREWGEELQAVLRSSQGTSYDSYRLCDSLTSFSQNAT 360

Query: 361  LYLNRTSLSKEDRQVVSELAECVRDFLRKTSTVLKNRALEDITASIAMAVIQQKMDRHME 420
            LYLNRTSLSKEDRQVVSELAECVRDFLRKTSTVLKNRALEDITASIAMAVIQQKMDRHME
Sbjct: 361  LYLNRTSLSKEDRQVVSELAECVRDFLRKTSTVLKNRALEDITASIAMAVIQQKMDRHME 420

Query: 421  VCYIFASEKKWAFSDEWVACLGSNRALFRQPDLVLRLLETVIDVSTADRAIPESQIRQVI 480
            VCYIFASEKKWAFSDEWVACLGSNRALFRQPDLVLRLLETVIDVSTADRAIPESQIRQVI
Sbjct: 421  VCYIFASEKKWAFSDEWVACLGSNRALFRQPDLVLRLLETVIDVSTADRAIPESQIRQVI 480

Query: 481  HLILECYADLSLPGKNKVLAGILRSWGRKGLSEKLLAYVEGFQEDLNTTFNQLTQSASEQ 540
            HLILECYADLSLPGKNKVLAGILRSWGRKGLSEKLLAYVEGFQEDLNTTFNQLTQSASEQ
Sbjct: 481  HLILECYADLSLPGKNKVLAGILRSWGRKGLSEKLLAYVEGFQEDLNTTFNQLTQSASEQ 540

Query: 541  GLAKAVASVARLVIVHPEVTVKKMCSLAVVNLGTHKFLAQILTAFPALRFVEEQGPNSSA 600
            GLAKAVASVARLVIVHPEVTVKKMCSLAVVNLGTHKFLAQILTAFPALRFVEEQGPNSSA
Sbjct: 541  GLAKAVASVARLVIVHPEVTVKKMCSLAVVNLGTHKFLAQILTAFPALRFVEEQGPNSSA 600

Query: 601  TFMVSCLKETVWMKFSTPKEEKQFLELLNCLMSPVKPQGIPVAALLEPDEVLKEFVLPFL 660
            TFMVSCLKETVWMKFSTPKEEKQFLELLNCLMSPVKPQGIPVAALLEPDEVLKEFVLPFL
Sbjct: 601  TFMVSCLKETVWMKFSTPKEEKQFLELLNCLMSPVKPQGIPVAALLEPDEVLKEFVLPFL 660

Query: 661  RLDVEEVDLSLRIFIQTLEANACREEYWLQTCSPFPLLFSLCQLLDRFSKYWQLPKEKRC 720
            RLDVEEVDLSLRIFIQTLEANACREEYWLQTCSPFPLLFSLCQLLDRFSKYWQLPKEKRC
Sbjct: 661  RLDVEEVDLSLRIFIQTLEANACREEYWLQTCSPFPLLFSLCQLLDRFSKYWQLPKEKRC 720

Query: 721  LSLDRKDLAIHILELLCEIVSANAETFSPDVWIKSLSWLHRKLEQLDWTVGLRLKSFFEG 780
            LSLDRKDLAIHILELLCEIVSANAETFSPDVWIKSLSWLHRKLEQLDWTVGLRLKSFFEG
Sbjct: 721  LSLDRKDLAIHILELLCEIVSANAETFSPDVWIKSLSWLHRKLEQLDWTVGLRLKSFFEG 780

Query: 781  HFKCEVPATLFEICKLSEDEWTSQAHPGYGAGTGLLAWMECCCVSSGISERMLSLLVVDV 840
            HFKCEVPATLFEICKLSEDEWTSQAHPGYGAGTGLLAWMECCCVSSGISERMLSLLVVDV
Sbjct: 781  HFKCEVPATLFEICKLSEDEWTSQAHPGYGAGTGLLAWMECCCVSSGISERMLSLLVVDV 840

Query: 841  GNPEEVRLFSKGFLVALVQVMPWCSPQEWQRLHQLTRRLLEKQLLHVPYSLEYIQFVPLL 900
            GNPEEVRLFSKGFLVALVQVMPWCSPQEWQRLHQLTRRLLEKQLLHVPYSLEYIQFVPLL
Sbjct: 841  GNPEEVRLFSKGFLVALVQVMPWCSPQEWQRLHQLTRRLLEKQLLHVPYSLEYIQFVPLL 900

Query: 901  NLKPFAQELQLSVLFLRTFQFLCSHSCRDWLPLEGWNHVVKLLCGSLTRLLDSVRAIQAA 960
            NLKPFAQELQLSVLFLRTFQFLCSHSCRDWLPLEGWNHVVKLLCGSLTRLLDSVRAIQAA
Sbjct: 901  NLKPFAQELQLSVLFLRTFQFLCSHSCRDWLPLEGWNHVVKLLCGSLTRLLDSVRAIQAA 960

Query: 961  GPWVQGPEQDLTQEALFVYTQVFCHALHIMAMLHPEVCEPLYVLALETLTCYETLSKTNP 1020
            GPWVQGPEQDLTQEALFVYTQVFCHALHIMAMLHPEVCEPLYVLALETLTCYETLSKTNP
Sbjct: 961  GPWVQGPEQDLTQEALFVYTQVFCHALHIMAMLHPEVCEPLYVLALETLTCYETLSKTNP 1020

Query: 1021 SVSSLLQRAHEQRFLKSIAEGIGPEERRQTLLQKMSSF 1058
            SVSSLLQRAHEQRFLKSIAEGIGPEERRQTLLQKMSSF
Sbjct: 1021 SVSSLLQRAHEQRFLKSIAEGIGPEERRQTLLQKMSSF 1058


>gi|58530853 growth hormone releasing hormone receptor isoform b
           precursor [Homo sapiens]
          Length = 337

 Score = 32.3 bits (72), Expect = 2.4
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)

Query: 60  SQPFAWKKKALIIIWAKVLQPHPVT-PSDTETRWQEDLFFSVGNMIPTINHTILFELLKS 118
           S+  A K+   I  W++   P+PV  P   E   +E+ +FS   +I T+ H+I      S
Sbjct: 87  SESGAVKRDCTITGWSEPFPPYPVACPVPLELLAEEESYFSTVKIIYTVGHSI------S 140

Query: 119 LEASGLFIQLLMALPTTIC 137
           + A  + I +L+AL    C
Sbjct: 141 IVALFVAITILVALRRLHC 159


>gi|58530851 growth hormone releasing hormone receptor isoform a
           precursor [Homo sapiens]
          Length = 423

 Score = 32.3 bits (72), Expect = 2.4
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)

Query: 60  SQPFAWKKKALIIIWAKVLQPHPVT-PSDTETRWQEDLFFSVGNMIPTINHTILFELLKS 118
           S+  A K+   I  W++   P+PV  P   E   +E+ +FS   +I T+ H+I      S
Sbjct: 87  SESGAVKRDCTITGWSEPFPPYPVACPVPLELLAEEESYFSTVKIIYTVGHSI------S 140

Query: 119 LEASGLFIQLLMALPTTIC 137
           + A  + I +L+AL    C
Sbjct: 141 IVALFVAITILVALRRLHC 159


>gi|148664188 leucine rich repeat containing 43 isoform 2 [Homo
           sapiens]
          Length = 471

 Score = 32.0 bits (71), Expect = 3.2
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 20/102 (19%)

Query: 199 PPKRLRSDPDACPTMPLLAMLLRGLTQIQSRILGPGRKCCALANLADMLTVFALTED--- 255
           PPK LR DP      P+L +L RGL  ++  + G       ++ + +   V  LT D   
Sbjct: 366 PPKELRQDP------PILQVLGRGLVILEPLLAGEP----LVSTVCNFGVVRTLTSDRLT 415

Query: 256 ---DPQEVSATVYLDKLATVISVWNSDTQNPYHQQALAEKVK 294
              D +++      +K   VI ++  D    YH + L  +V+
Sbjct: 416 LARDSKKIKKVAKKEKPKAVIPIYEGD----YHPEPLTVEVQ 453


>gi|148664213 leucine rich repeat containing 43 isoform 1 [Homo
           sapiens]
          Length = 656

 Score = 32.0 bits (71), Expect = 3.2
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 20/102 (19%)

Query: 199 PPKRLRSDPDACPTMPLLAMLLRGLTQIQSRILGPGRKCCALANLADMLTVFALTED--- 255
           PPK LR DP      P+L +L RGL  ++  + G       ++ + +   V  LT D   
Sbjct: 551 PPKELRQDP------PILQVLGRGLVILEPLLAGEP----LVSTVCNFGVVRTLTSDRLT 600

Query: 256 ---DPQEVSATVYLDKLATVISVWNSDTQNPYHQQALAEKVK 294
              D +++      +K   VI ++  D    YH + L  +V+
Sbjct: 601 LARDSKKIKKVAKKEKPKAVIPIYEGD----YHPEPLTVEVQ 638


>gi|38505218 putative acyl-CoA dehydrogenase [Homo sapiens]
          Length = 780

 Score = 31.2 bits (69), Expect = 5.4
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 11  EMTILHGGFLLAEQLFHPKALAELTKSDWE--RVGRPI 46
           E  ++HG F L   +FHPK    +   DWE   +G P+
Sbjct: 215 EENLIHGDFRLDNIVFHPKECRVIAVLDWELSTIGHPL 252


>gi|169171357 PREDICTED: similar to hCG1804306 [Homo sapiens]
          Length = 271

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 16/146 (10%)

Query: 240 LANLADMLTVFALTEDDPQEVSATVYLDKLATVISVWNSDTQNPYHQQALAEKVKEAERD 299
           +  + D LT  A+T      V    +   +  V+S       +PY QQ   +K   A   
Sbjct: 96  IVKINDTLTSLAMTN-----VCKATWSSGMKAVLSC------SPYAQQDQKDKSHPAVSA 144

Query: 300 VSLTSLAKLPSETIFVGCEFLHHLLREWGEELQAVLRSSQGTSYDS--YRLCDSLTSFSQ 357
             + ++  +   ++ V   FL   +++W   L   + ++ GT++DS    L D +  FS 
Sbjct: 145 KLVANVFSVAGRSVGVDRMFLVGDIKDWVAVLVDDIPNACGTTHDSADKLLLDEVRRFSP 204

Query: 358 NATLYLNRTSLSKEDRQVVSELAECV 383
           +    + R  +SK   +  +EL  C+
Sbjct: 205 H---LVGRVGVSKLQPEAAAELRNCL 227


>gi|169172220 PREDICTED: similar to hCG1804306 [Homo sapiens]
          Length = 271

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 16/146 (10%)

Query: 240 LANLADMLTVFALTEDDPQEVSATVYLDKLATVISVWNSDTQNPYHQQALAEKVKEAERD 299
           +  + D LT  A+T      V    +   +  V+S       +PY QQ   +K   A   
Sbjct: 96  IVKINDTLTSLAMTN-----VCKATWSSGMKAVLSC------SPYAQQDQKDKSHPAVSA 144

Query: 300 VSLTSLAKLPSETIFVGCEFLHHLLREWGEELQAVLRSSQGTSYDS--YRLCDSLTSFSQ 357
             + ++  +   ++ V   FL   +++W   L   + ++ GT++DS    L D +  FS 
Sbjct: 145 KLVANVFSVAGRSVGVDRMFLVGDIKDWVAVLVDDIPNACGTTHDSADKLLLDEVRRFSP 204

Query: 358 NATLYLNRTSLSKEDRQVVSELAECV 383
           +    + R  +SK   +  +EL  C+
Sbjct: 205 H---LVGRVGVSKLQPEAAAELRNCL 227


>gi|169170962 PREDICTED: similar to hCG1804306 [Homo sapiens]
          Length = 271

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 16/146 (10%)

Query: 240 LANLADMLTVFALTEDDPQEVSATVYLDKLATVISVWNSDTQNPYHQQALAEKVKEAERD 299
           +  + D LT  A+T      V    +   +  V+S       +PY QQ   +K   A   
Sbjct: 96  IVKINDTLTSLAMTN-----VCKATWSSGMKAVLSC------SPYAQQDQKDKSHPAVSA 144

Query: 300 VSLTSLAKLPSETIFVGCEFLHHLLREWGEELQAVLRSSQGTSYDS--YRLCDSLTSFSQ 357
             + ++  +   ++ V   FL   +++W   L   + ++ GT++DS    L D +  FS 
Sbjct: 145 KLVANVFSVAGRSVGVDRMFLVGDIKDWVAVLVDDIPNACGTTHDSADKLLLDEVRRFSP 204

Query: 358 NATLYLNRTSLSKEDRQVVSELAECV 383
           +    + R  +SK   +  +EL  C+
Sbjct: 205 H---LVGRVGVSKLQPEAAAELRNCL 227


>gi|239508768 PREDICTED: similar to hCG1804306 [Homo sapiens]
          Length = 271

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 16/146 (10%)

Query: 240 LANLADMLTVFALTEDDPQEVSATVYLDKLATVISVWNSDTQNPYHQQALAEKVKEAERD 299
           +  + D LT  A+T      V    +   +  V+S       +PY QQ   +K   A   
Sbjct: 96  IVKINDTLTSLAMTN-----VCKATWSSGMKAVLSC------SPYAQQDQKDKSHPAVSA 144

Query: 300 VSLTSLAKLPSETIFVGCEFLHHLLREWGEELQAVLRSSQGTSYDS--YRLCDSLTSFSQ 357
             + ++  +   ++ V   FL   +++W   L   + ++ GT++DS    L D +  FS 
Sbjct: 145 KLVANVFSVAGRSVGVDRMFLVGDIKDWVAVLVDDIPNACGTTHDSADKLLLDEVRRFSP 204

Query: 358 NATLYLNRTSLSKEDRQVVSELAECV 383
           +    + R  +SK   +  +EL  C+
Sbjct: 205 H---LVGRVGVSKLQPEAAAELRNCL 227


>gi|48255891 protein kinase C substrate 80K-H isoform 2 [Homo
           sapiens]
          Length = 525

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 16/48 (33%), Positives = 22/48 (45%)

Query: 594 QGPNSSATFMVSCLKETVWMKFSTPKEEKQFLELLNCLMSPVKPQGIP 641
           QGPN S T  + C KET+    + P   +  +EL+     P  P   P
Sbjct: 470 QGPNRSTTVRLLCGKETMVTSTTEPSRCEYLMELMTPAACPEPPPEAP 517


>gi|48255889 protein kinase C substrate 80K-H isoform 1 [Homo
           sapiens]
          Length = 528

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 16/48 (33%), Positives = 22/48 (45%)

Query: 594 QGPNSSATFMVSCLKETVWMKFSTPKEEKQFLELLNCLMSPVKPQGIP 641
           QGPN S T  + C KET+    + P   +  +EL+     P  P   P
Sbjct: 473 QGPNRSTTVRLLCGKETMVTSTTEPSRCEYLMELMTPAACPEPPPEAP 520


>gi|150417986 ADP-ribosylation factor guanine nucleotide-exchange
            factor 2 [Homo sapiens]
          Length = 1785

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 15/79 (18%)

Query: 684  REEYWLQTCSPFPLLFSLCQLLDRFSKYWQLPKE----------KRCLSLDRKDLAIHIL 733
            + E+   TC+    L+++C   D F+++++   E          + C+  D + LA    
Sbjct: 1394 KSEWMTTTCNH--ALYAIC---DVFTQFYEALNEVLLSDVFAQLQWCVKQDNEQLARSGT 1448

Query: 734  ELLCEIVSANAETFSPDVW 752
              L  +V +N E FSP+VW
Sbjct: 1449 NCLENLVISNGEKFSPEVW 1467


>gi|211971008 acyl-Coenzyme A dehydrogenase family, member 10
           isoform a [Homo sapiens]
          Length = 1090

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 10  EEMTILHGGFLLAEQLFHPKALAELTKSDWE--RVGRPIVEALREISSAAAHSQP 62
           +  T++HG F L   +FHP+    L   DWE   +G P+ +      S  AH  P
Sbjct: 486 QRTTVVHGDFRLDNLVFHPEEPEVLAVLDWELSTLGDPLADV---AYSCLAHYLP 537


>gi|48976061 acyl-Coenzyme A dehydrogenase family, member 10 isoform
           b [Homo sapiens]
          Length = 1059

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 10  EEMTILHGGFLLAEQLFHPKALAELTKSDWE--RVGRPIVEALREISSAAAHSQP 62
           +  T++HG F L   +FHP+    L   DWE   +G P+ +      S  AH  P
Sbjct: 455 QRTTVVHGDFRLDNLVFHPEEPEVLAVLDWELSTLGDPLADV---AYSCLAHYLP 506


>gi|211971012 acyl-Coenzyme A dehydrogenase family, member 10
           isoform c [Homo sapiens]
          Length = 890

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 10  EEMTILHGGFLLAEQLFHPKALAELTKSDWE--RVGRPIVEALREISSAAAHSQP 62
           +  T++HG F L   +FHP+    L   DWE   +G P+ +      S  AH  P
Sbjct: 455 QRTTVVHGDFRLDNLVFHPEEPEVLAVLDWELSTLGDPLADV---AYSCLAHYLP 506


>gi|148806872 lupus brain antigen 1 [Homo sapiens]
          Length = 2375

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 26/142 (18%)

Query: 817  AWMECCCVSSGISERMLSLLVVDVGNPEEVRLFSKGFLVALVQVMPWCSPQEWQRLHQLT 876
            A+ E   V SG +ER L L +V + N EE+             + P+C P  ++   ++ 
Sbjct: 1953 AFSEIDYVVSGEAERTLVLCLVMLVNAEEI-------------LQPYCKPLLYRHFREIE 1999

Query: 877  RRLLEKQLL------HVPYSLEYI--QFVPLLNLKPFAQELQLSVLFLRTFQFLCSHSCR 928
             RL   QL+       VP  L  +  + +  +N+K  A+ LQ  +LF R  ++L     R
Sbjct: 2000 SRL---QLMSMDCPGQVPERLLKVVKRVLVAVNVKSVAEALQ-DLLFERDEEYLMDCDWR 2055

Query: 929  DWLPLEGWNHVVKLLCGSLTRL 950
             W P+     +V+ L     RL
Sbjct: 2056 -WDPVHTKGSIVRGLYYEEVRL 2076


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,216,617
Number of Sequences: 37866
Number of extensions: 1764252
Number of successful extensions: 3988
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3976
Number of HSP's gapped (non-prelim): 26
length of query: 1058
length of database: 18,247,518
effective HSP length: 113
effective length of query: 945
effective length of database: 13,968,660
effective search space: 13200383700
effective search space used: 13200383700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.