Search of human proteins with 122937498

Search of human proteins with 122937498

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|122937498 hypothetical LOC646603 [Homo sapiens]
         (202 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|122937498 hypothetical LOC646603 [Homo sapiens]                    436   e-123
gi|197927274 DHDPS-like protein isoform 2 [Homo sapiens]               30   1.8  
gi|31543060 DHDPS-like protein isoform 1 [Homo sapiens]                30   1.8  
gi|55741677 SET domain containing 1A [Homo sapiens]                    29   3.1  
gi|4557659 iduronate-2-sulfatase isoform a precursor [Homo sapiens]    29   3.1  
gi|45446740 ATP-binding cassette, sub-family A, member 2 isoform...    29   3.1  
gi|47078218 ATP-binding cassette, sub-family A, member 2 isoform...    29   3.1  
gi|42734325 wings apart-like homolog [Homo sapiens]                    28   6.9  
gi|162287219 prune homolog 2 [Homo sapiens]                            27   9.0  
gi|7019493 DNA-directed DNA polymerase mu [Homo sapiens]               27   9.0  
gi|32171205 EF-hand domain family, member A2 [Homo sapiens]            27   9.0  
gi|21493039 A-kinase anchor protein 4 isoform 2 [Homo sapiens]         27   9.0  
gi|21493037 A-kinase anchor protein 4 isoform 1 [Homo sapiens]         27   9.0  

>gi|122937498 hypothetical LOC646603 [Homo sapiens]
          Length = 202

 Score =  436 bits (1121), Expect = e-123
 Identities = 202/202 (100%), Positives = 202/202 (100%)

Query: 1   MSHYFYLTPQILLPFSPLTSQEFDLIRRKAGASWQDETRWSDSSVTTYTGSYRKKQLDKS 60
           MSHYFYLTPQILLPFSPLTSQEFDLIRRKAGASWQDETRWSDSSVTTYTGSYRKKQLDKS
Sbjct: 1   MSHYFYLTPQILLPFSPLTSQEFDLIRRKAGASWQDETRWSDSSVTTYTGSYRKKQLDKS 60

Query: 61  MCSQFSFRAGQHEPECKQMSLTNSSACHLLCWAGTQETTDIKGLFPDITRPFKKSFDVKH 120
           MCSQFSFRAGQHEPECKQMSLTNSSACHLLCWAGTQETTDIKGLFPDITRPFKKSFDVKH
Sbjct: 61  MCSQFSFRAGQHEPECKQMSLTNSSACHLLCWAGTQETTDIKGLFPDITRPFKKSFDVKH 120

Query: 121 GVAHQIWDFGDCFPTPPNYGKYCVRPKKPAQEALINYSRRGKGVLKHLHGRCDSESKVCS 180
           GVAHQIWDFGDCFPTPPNYGKYCVRPKKPAQEALINYSRRGKGVLKHLHGRCDSESKVCS
Sbjct: 121 GVAHQIWDFGDCFPTPPNYGKYCVRPKKPAQEALINYSRRGKGVLKHLHGRCDSESKVCS 180

Query: 181 SEDSEADRYSDYGWGGPSSPFN 202
           SEDSEADRYSDYGWGGPSSPFN
Sbjct: 181 SEDSEADRYSDYGWGGPSSPFN 202


>gi|197927274 DHDPS-like protein isoform 2 [Homo sapiens]
          Length = 164

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 78  QMSLTNSSACHLLCWA-GTQETTDIKGLFPDITRPFKKSFDVKHG 121
           +  L+ S + ++  WA G  +  DI G++P +T PF  + +V +G
Sbjct: 11  RQGLSRSLSRNVGVWASGEGKKVDIAGIYPPVTTPFTATAEVDYG 55


>gi|31543060 DHDPS-like protein isoform 1 [Homo sapiens]
          Length = 327

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 78  QMSLTNSSACHLLCWA-GTQETTDIKGLFPDITRPFKKSFDVKHG 121
           +  L+ S + ++  WA G  +  DI G++P +T PF  + +V +G
Sbjct: 11  RQGLSRSLSRNVGVWASGEGKKVDIAGIYPPVTTPFTATAEVDYG 55


>gi|55741677 SET domain containing 1A [Homo sapiens]
          Length = 1707

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 25   LIRRKAGASWQDETRWSDSSVTTYTGSYRKKQ 56
            L+++ +GA W ++T W   ++T  T   RK++
Sbjct: 1450 LLQQTSGADWLNDTHWVHHTITNLTTPKRKRR 1481


>gi|4557659 iduronate-2-sulfatase isoform a precursor [Homo sapiens]
          Length = 550

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/60 (30%), Positives = 21/60 (35%)

Query: 133 FPTPPNYGKYCVRPKKPAQEALINYSRRGKGVLKHLHGRCDSESKVCSSEDSEADRYSDY 192
           FPT        V P+ P     +   R GK +LKH   R   E         E   YS Y
Sbjct: 407 FPTLAGLAGLQVPPRCPVPSFHVELCREGKNLLKHFRFRDLEEDPYLPGNPRELIAYSQY 466


>gi|45446740 ATP-binding cassette, sub-family A, member 2 isoform a
            [Homo sapiens]
          Length = 2436

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 14/61 (22%)

Query: 9    PQILLPFSPLTSQE-FDLIRRKAGASWQDE-------------TRWSDSSVTTYTGSYRK 54
            PQ    F  LT++E   L  R  G SW+DE             T+++D    TY+G  ++
Sbjct: 2134 PQCDALFDELTAREHLQLYTRLRGISWKDEARVVKWALEKLELTKYADKPAGTYSGGNKR 2193

Query: 55   K 55
            K
Sbjct: 2194 K 2194


>gi|47078218 ATP-binding cassette, sub-family A, member 2 isoform b
            [Homo sapiens]
          Length = 2466

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 14/61 (22%)

Query: 9    PQILLPFSPLTSQE-FDLIRRKAGASWQDE-------------TRWSDSSVTTYTGSYRK 54
            PQ    F  LT++E   L  R  G SW+DE             T+++D    TY+G  ++
Sbjct: 2164 PQCDALFDELTAREHLQLYTRLRGISWKDEARVVKWALEKLELTKYADKPAGTYSGGNKR 2223

Query: 55   K 55
            K
Sbjct: 2224 K 2224


>gi|42734325 wings apart-like homolog [Homo sapiens]
          Length = 1190

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 154  LINYSRRGKGVLKHLHGRCDSESKVCSSEDSEADR 188
            L+ YS R +  L ++   C  +S +CS E  ++ R
Sbjct: 991  LVEYSARNRHCLVNMETSCSFDSSICSGEGDDSLR 1025


>gi|162287219 prune homolog 2 [Homo sapiens]
          Length = 3088

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 69   AGQHEPECKQMSLTNSSACHLLCWAGTQE-TTDIKGLFPDITRPFKKSFDVKHGVAHQIW 127
            +G  E      S  N     L+   G  E  T +K L  +    F+KSFD K     +IW
Sbjct: 1566 SGYQEENQGNWSEQNHQESELITTDGQVEIVTKVKDLEKNRINEFEKSFDRKTPTFLEIW 1625

Query: 128  D---FGDCFP--TPPNYGKY 142
            +    GD F   + P  GKY
Sbjct: 1626 NDSVDGDSFSSLSSPETGKY 1645


>gi|7019493 DNA-directed DNA polymerase mu [Homo sapiens]
          Length = 494

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/43 (34%), Positives = 20/43 (46%)

Query: 151 QEALINYSRRGKGVLKHLHGRCDSESKVCSSEDSEADRYSDYG 193
           Q  L  +SR+ KG+  + HG  D E K      SE D +   G
Sbjct: 441 QRELRRFSRKEKGLWLNSHGLFDPEQKTFFQAASEEDIFRHLG 483


>gi|32171205 EF-hand domain family, member A2 [Homo sapiens]
          Length = 530

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 13 LPFSPLTSQEFDLIRRKAGASWQDETRWSDSSVTTYTG 50
          LP  P +S+E D  R  A A+W+   RW + SV    G
Sbjct: 38 LPGRPFSSRE-DEERAVAEAAWRRRRRWGELSVAAAAG 74


>gi|21493039 A-kinase anchor protein 4 isoform 2 [Homo sapiens]
          Length = 845

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 54  KKQLDKSMCSQFSFRAGQHEPECKQMSLTNSS 85
           +K+      S  S +AG H+P+C+  SL  S+
Sbjct: 429 EKETKSQSLSYASLKAGSHDPKCRNQSLEFST 460


>gi|21493037 A-kinase anchor protein 4 isoform 1 [Homo sapiens]
          Length = 854

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 54  KKQLDKSMCSQFSFRAGQHEPECKQMSLTNSS 85
           +K+      S  S +AG H+P+C+  SL  S+
Sbjct: 438 EKETKSQSLSYASLKAGSHDPKCRNQSLEFST 469


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.133    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,292,938
Number of Sequences: 37866
Number of extensions: 421220
Number of successful extensions: 789
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 780
Number of HSP's gapped (non-prelim): 13
length of query: 202
length of database: 18,247,518
effective HSP length: 97
effective length of query: 105
effective length of database: 14,574,516
effective search space: 1530324180
effective search space used: 1530324180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.